Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physarum_20polycephalum_20[genbank_20GCA_5F000413255.3_202014-06-30] 69,687 sequences; 205,175,886 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq612 98.7 1e-15 seq1429 93.3 5e-14 >seq612 Length=73199 Score = 98.7 bits (108), Expect = 1e-15 Identities = 296/455 (65%), Gaps = 3/455 (1%) Strand=Plus/Plus Query 62943 GCAACAGATGCCAGATTACACACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCA 63002 |||| ||| || || || ||||| || ||||| | | | | |||| |||||||| Sbjct 23705 GCAATAGACGCAAGGTTGCACACAGCAACCTCGTCTGGCGCGGTGTATTCGATTATCTCT 23764 Query 63003 GTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACAC 63062 ||||| || || ||||| ||| || || | ||||| ||||| ||| |||| | Sbjct 23765 GTGCAGAGGTTGCTACAAGAGATGGTCCCAAGGTTTTGCTGATTCGACTTCCTGTTGGCC 23824 Query 63063 GCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTC 63122 | ||||| || || ||| | ||| |||| || || || |||| || | || || | Sbjct 23825 GAGTCCTTGTACAGCATGTACGGATTACCGGTCTCTATTTGAGCCTCGAGGATGGCAAAC 23884 Query 63123 CAGACGACTCGAGCCTTTATTATAGATTTGT--ATCTCCTTTCTCT-TTCGTATAGAGTA 63179 || | || | ||||| ||| | || | ||| | | ||| || || Sbjct 23885 CACAAATCTTGGGCCTTCATTGTCTTCCTGGCCAAGCCCTCAGTTTGTTCATACTTGGTG 23944 Query 63180 TACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCTAGGACATTCATCCGGACAC 63239 ||||| ||||| | |||||||| || | | | || | ||| | || || Sbjct 23945 TACAACTCCTCGAATTGTTCTCCCCAGACCTCAGCAAGTCCTTTAGCTTCGTTGGGGCAG 24004 Query 63240 ATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGA 63299 | | ||||| || || | |||| ||| || ||||| |||||||| || | |||||| Sbjct 24005 AAGAGGGACCAGTCACCATTTTCCTCCACACGCTTCATGAAGAGATCTGGGACCCAAAGT 24064 Query 63300 GCTATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGG 63359 || |||| |||| | | || ||||| || || || ||||| |||||||||| Sbjct 24065 GCGTAGAATAAGTCTCGCGCGCGATTCTCCTCCTTGCCGGTGTTCTTGCGAAGATCGAGG 24124 Query 63360 AACGCCATAATATCAGAATGCCACGGTTCCAAGTA 63394 || | ||||| |||| |||||| ||||||| ||| Sbjct 24125 AAAGATATAATGTCAGCATGCCAGGGTTCCAGGTA 24159 >seq1429 Length=23345 Score = 93.3 bits (102), Expect = 5e-14 Identities = 130/180 (72%), Gaps = 3/180 (2%) Strand=Plus/Plus Query 33693 GAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTG 33752 |||| | ||| || ||||| || ||||| || | ||||||||| || || | | || Sbjct 7519 GAAATGTGGATACCCTCTACCGCTGCAAATGCTACAAGTCTCTCAGCA-AAGCTTCCCTC 7577 Query 33753 TCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATG 33812 | ||||||||| | | |||||||| |||||||| || |||||||| || || || || Sbjct 7578 T--TGTATCCACCTCAGTGCCCAATCAGCCTTCTTCTTCACACAAGGGATTGTCTCAATA 7635 Query 33813 GCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTA 33872 ||||| || || || |||||| | | ||| | || || ||||||||||||||| Sbjct 7636 GCATTGAACAGTCTGTCTTTTTCTTGTGGGTTTTTGATGTATGTGTCGATCAAAAGACTA 7695 Score = 82.4 bits (90), Expect = 1e-10 Identities = 97/129 (75%), Gaps = 2/129 (2%) Strand=Plus/Minus Query 33879 TCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATC 33938 || || ||||| || |||||||| || || ||||| || || || | |||||| | ||| Sbjct 7476 TCGGAGTGAATATTCTCAATGGCGATTTGGAATCCATAAAAGCAGCGAGCCTCAGGGATC 7417 Query 33939 TGCACTTCTGTACAA-AATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCTGC 33997 || |||||| | || || || ||| | || |||||||| |||||||||||||| || Sbjct 7416 TGTACTTCT-TGCATGAAACGAGTTGCAAGGTTCTCATTCACAATTCCATCACTGGCAGC 7358 Query 33998 AAAAAACGC 34006 ||| || || Sbjct 7357 AAAGAAAGC 7349 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629268973761360