Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physarum_20polycephalum_20[genbank_20GCA_5F000413255.3_202014-06-30] 69,687 sequences; 205,175,886 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq1429 104 3e-17 seq612 102 1e-16 >seq1429 Length=23345 Score = 104 bits (114), Expect = 3e-17 Identities = 127/171 (74%), Gaps = 3/171 (2%) Strand=Plus/Plus Query 36278 ATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTGTCATGTATC 36337 || || ||||| || ||||| || | ||||||||| || || | | || | |||||| Sbjct 7528 ATACCCTCTACCGCTGCAAATGCTACAAGTCTCTCAGCA-AAGCTTCCCTCT--TGTATC 7584 Query 36338 CACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAG 36397 ||| | | |||||||| |||||||| || |||||||| |||||||| |||||||| || Sbjct 7585 CACCTCAGTGCCCAATCAGCCTTCTTCTTCACACAAGGGATTGTCTCAATAGCATTGAAC 7644 Query 36398 AGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTA 36448 || || |||||| | | ||| | ||||| || |||||||||||| Sbjct 7645 AGTCTGTCTTTTTCTTGTGGGTTTTTGATGTATGTGTCGATCAAAAGACTA 7695 Score = 86.0 bits (94), Expect = 8e-12 Identities = 98/129 (76%), Gaps = 2/129 (2%) Strand=Plus/Minus Query 36455 TCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATC 36514 || || ||||| || |||||||| ||||| ||||| || || || | |||||| | ||| Sbjct 7476 TCGGAGTGAATATTCTCAATGGCGATTTGGAATCCATAAAAGCAGCGAGCCTCAGGGATC 7417 Query 36515 TGTACTTCTGTACA-AAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGC 36573 ||||||||| | || || || ||| | || |||||||| ||||| |||||||| || Sbjct 7416 TGTACTTCT-TGCATGAAACGAGTTGCAAGGTTCTCATTCACAATTCCATCACTGGCAGC 7358 Query 36574 AAAAAACGC 36582 ||| || || Sbjct 7357 AAAGAAAGC 7349 >seq612 Length=73199 Score = 102 bits (112), Expect = 1e-16 Identities = 296/455 (65%), Gaps = 3/455 (1%) Strand=Plus/Plus Query 65736 GCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCA 65795 |||| ||| || || || || || || ||||| | | | | |||| |||||||| Sbjct 23705 GCAATAGACGCAAGGTTGCACACAGCAACCTCGTCTGGCGCGGTGTATTCGATTATCTCT 23764 Query 65796 GTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACAC 65855 ||||| || || ||||| |||||| || | ||||| ||||| ||| |||| | Sbjct 23765 GTGCAGAGGTTGCTACAAGAGATGGTCCCAAGGTTTTGCTGATTCGACTTCCTGTTGGCC 23824 Query 65856 GCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTC 65915 | ||||| || || ||| | ||| |||| || || || |||| || | || || | Sbjct 23825 GAGTCCTTGTACAGCATGTACGGATTACCGGTCTCTATTTGAGCCTCGAGGATGGCAAAC 23884 Query 65916 CAGACGACTCGAGCCTTTATTATAGATTTGT---ATCTCTTTTCTCTTTCGTATAGTGTA 65972 || | || | ||||| ||| | || | | || | ||| || || Sbjct 23885 CACAAATCTTGGGCCTTCATTGTCTTCCTGGCCAAGCCCTCAGTTTGTTCATACTTGGTG 23944 Query 65973 TACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACAC 66032 ||||| ||||| | |||||||| || | | | ||| | ||| | || || Sbjct 23945 TACAACTCCTCGAATTGTTCTCCCCAGACCTCAGCAAGTCCTTTAGCTTCGTTGGGGCAG 24004 Query 66033 ATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGA 66092 | | ||||| || || | |||| ||| || ||||| |||||||| || | |||||| Sbjct 24005 AAGAGGGACCAGTCACCATTTTCCTCCACACGCTTCATGAAGAGATCTGGGACCCAAAGT 24064 Query 66093 GCTATAAATAAATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGG 66152 || ||||| |||| | | || ||||| || || || ||||| |||||||||| Sbjct 24065 GCGTAGAATAAGTCTCGCGCGCGATTCTCCTCCTTGCCGGTGTTCTTGCGAAGATCGAGG 24124 Query 66153 AACGCCATAATATCATAATGCCACGGTTCCAAGTA 66187 || | ||||| ||| |||||| ||||||| ||| Sbjct 24125 AAAGATATAATGTCAGCATGCCAGGGTTCCAGGTA 24159 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657599473901080