Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Physarum_20polycephalum_20[genbank_20GCA_5F000413255.3_202014-06-30]
69,687 sequences; 205,175,886 total letters
Query= NC_003391.1
Length=205719
Score E
Sequences producing significant alignments: (Bits) Value
seq1429 104 3e-17
seq612 102 1e-16
>seq1429
Length=23345
Score = 104 bits (114), Expect = 3e-17
Identities = 127/171 (74%), Gaps = 3/171 (2%)
Strand=Plus/Plus
Query 36278 ATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTGTCATGTATC 36337
|| || ||||| || ||||| || | ||||||||| || || | | || | ||||||
Sbjct 7528 ATACCCTCTACCGCTGCAAATGCTACAAGTCTCTCAGCA-AAGCTTCCCTCT--TGTATC 7584
Query 36338 CACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAG 36397
||| | | |||||||| |||||||| || |||||||| |||||||| |||||||| ||
Sbjct 7585 CACCTCAGTGCCCAATCAGCCTTCTTCTTCACACAAGGGATTGTCTCAATAGCATTGAAC 7644
Query 36398 AGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTA 36448
|| || |||||| | | ||| | ||||| || ||||||||||||
Sbjct 7645 AGTCTGTCTTTTTCTTGTGGGTTTTTGATGTATGTGTCGATCAAAAGACTA 7695
Score = 86.0 bits (94), Expect = 8e-12
Identities = 98/129 (76%), Gaps = 2/129 (2%)
Strand=Plus/Minus
Query 36455 TCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATC 36514
|| || ||||| || |||||||| ||||| ||||| || || || | |||||| | |||
Sbjct 7476 TCGGAGTGAATATTCTCAATGGCGATTTGGAATCCATAAAAGCAGCGAGCCTCAGGGATC 7417
Query 36515 TGTACTTCTGTACA-AAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGC 36573
||||||||| | || || || ||| | || |||||||| ||||| |||||||| ||
Sbjct 7416 TGTACTTCT-TGCATGAAACGAGTTGCAAGGTTCTCATTCACAATTCCATCACTGGCAGC 7358
Query 36574 AAAAAACGC 36582
||| || ||
Sbjct 7357 AAAGAAAGC 7349
>seq612
Length=73199
Score = 102 bits (112), Expect = 1e-16
Identities = 296/455 (65%), Gaps = 3/455 (1%)
Strand=Plus/Plus
Query 65736 GCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCA 65795
|||| ||| || || || || || || ||||| | | | | |||| ||||||||
Sbjct 23705 GCAATAGACGCAAGGTTGCACACAGCAACCTCGTCTGGCGCGGTGTATTCGATTATCTCT 23764
Query 65796 GTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACAC 65855
||||| || || ||||| |||||| || | ||||| ||||| ||| |||| |
Sbjct 23765 GTGCAGAGGTTGCTACAAGAGATGGTCCCAAGGTTTTGCTGATTCGACTTCCTGTTGGCC 23824
Query 65856 GCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTC 65915
| ||||| || || ||| | ||| |||| || || || |||| || | || || |
Sbjct 23825 GAGTCCTTGTACAGCATGTACGGATTACCGGTCTCTATTTGAGCCTCGAGGATGGCAAAC 23884
Query 65916 CAGACGACTCGAGCCTTTATTATAGATTTGT---ATCTCTTTTCTCTTTCGTATAGTGTA 65972
|| | || | ||||| ||| | || | | || | ||| || ||
Sbjct 23885 CACAAATCTTGGGCCTTCATTGTCTTCCTGGCCAAGCCCTCAGTTTGTTCATACTTGGTG 23944
Query 65973 TACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACAC 66032
||||| ||||| | |||||||| || | | | ||| | ||| | || ||
Sbjct 23945 TACAACTCCTCGAATTGTTCTCCCCAGACCTCAGCAAGTCCTTTAGCTTCGTTGGGGCAG 24004
Query 66033 ATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGA 66092
| | ||||| || || | |||| ||| || ||||| |||||||| || | ||||||
Sbjct 24005 AAGAGGGACCAGTCACCATTTTCCTCCACACGCTTCATGAAGAGATCTGGGACCCAAAGT 24064
Query 66093 GCTATAAATAAATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGG 66152
|| ||||| |||| | | || ||||| || || || ||||| ||||||||||
Sbjct 24065 GCGTAGAATAAGTCTCGCGCGCGATTCTCCTCCTTGCCGGTGTTCTTGCGAAGATCGAGG 24124
Query 66153 AACGCCATAATATCATAATGCCACGGTTCCAAGTA 66187
|| | ||||| ||| |||||| ||||||| |||
Sbjct 24125 AAAGATATAATGTCAGCATGCCAGGGTTCCAGGTA 24159
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 657599473901080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |