Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physarum_20polycephalum_20[genbank_20GCA_5F000413255.3_202014-06-30] 69,687 sequences; 205,175,886 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq612 127 3e-24 seq1429 100 4e-16 >seq612 Length=73199 Score = 127 bits (140), Expect = 3e-24 Identities = 331/504 (66%), Gaps = 3/504 (1%) Strand=Plus/Plus Query 79614 CGCGACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATTTC 79673 ||| | ||| || || || || || || ||||| | | | | |||| ||||| || Sbjct 23704 CGCAATAGACGCAAGGTTGCACACAGCAACCTCGTCTGGCGCGGTGTATTCGATTATCTC 23763 Query 79674 AGTGCAGAGGTTACTACACTTAATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACA 79733 ||||||||||| ||||| ||||| || | ||||| ||||| ||| |||| Sbjct 23764 TGTGCAGAGGTTGCTACAAGAGATGGTCCCAAGGTTTTGCTGATTCGACTTCCTGTTGGC 23823 Query 79734 CGCATCCTTATAAAGAATGAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTT 79793 || ||||| || || ||| ||||| |||| || || || |||| || | || || Sbjct 23824 CGAGTCCTTGTACAGCATGTACGGATTACCGGTCTCTATTTGAGCCTCGAGGATGGCAAA 23883 Query 79794 CCAGACGACTCGAGCCTTTATTATAGACTTGT---ATCTCTTTTCTCTTTCGTATTGTGT 79850 ||| | || | ||||| ||| | | || | | || | ||| || | || Sbjct 23884 CCACAAATCTTGGGCCTTCATTGTCTTCCTGGCCAAGCCCTCAGTTTGTTCATACTTGGT 23943 Query 79851 ATATAATCGTTCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGACATTCGTCAGGACA 79910 || || ||||| | |||||||| || || | | ||| | ||||| || || Sbjct 23944 GTACAACTCCTCGAATTGTTCTCCCCAGACCTCAGCAAGTCCTTTAGCTTCGTTGGGGCA 24003 Query 79911 CATCAACGACCACTCTCCATCATCCTTTACTCGTTTCATAAAGAGATCAGGAATCCAAAG 79970 | | ||||| || |||| |||| || || ||||| |||||||| || | |||||| Sbjct 24004 GAAGAGGGACCAGTCACCATTTTCCTCCACACGCTTCATGAAGAGATCTGGGACCCAAAG 24063 Query 79971 AGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAG 80030 || |||| |||| | | || |||||| || || || ||||| ||||||||| Sbjct 24064 TGCGTAGAATAAGTCTCGCGCGCGATTCTCCTCCTTGCCGGTGTTCTTGCGAAGATCGAG 24123 Query 80031 GAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGTCGTTT 80090 ||| | ||||| |||| |||||| ||||||| ||| | || | ||||| ||| || Sbjct 24124 GAAAGATATAATGTCAGCATGCCAGGGTTCCAGGTAAACTGCAAAGGCTCCCTTTCGCTT 24183 Query 80091 GTTTCCTCCCTGATCTATGTATCT 80114 | ||||| || || | ||||| Sbjct 24184 GCCGCCTCCTTGGTCAACATATCT 24207 >seq1429 Length=23345 Score = 100 bits (110), Expect = 4e-16 Identities = 131/181 (72%), Gaps = 3/181 (2%) Strand=Plus/Plus Query 50070 AGAAAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCGCT 50129 ||||| | ||| || ||||| || ||||| || ||||||||||| || | || | Sbjct 7518 AGAAATGTGGATACCCTCTACCGCTGCAAATGCTACAAGTCTCTCAGCAAAGCTTCCC-- 7575 Query 50130 GTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTAT 50189 || ||||||||| | | |||||||| |||||||| || |||||||| || || || || Sbjct 7576 -TCTTGTATCCACCTCAGTGCCCAATCAGCCTTCTTCTTCACACAAGGGATTGTCTCAAT 7634 Query 50190 GGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACT 50249 ||||| || || || |||||| | | ||| | || || |||||||||||||| Sbjct 7635 AGCATTGAACAGTCTGTCTTTTTCTTGTGGGTTTTTGATGTATGTGTCGATCAAAAGACT 7694 Query 50250 A 50250 | Sbjct 7695 A 7695 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 717643125026680