Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physarum_20polycephalum_20[genbank_20GCA_5F000413255.3_202014-06-30] 69,687 sequences; 205,175,886 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq612 113 6e-20 seq1429 100 4e-16 >seq612 Length=73199 Score = 113 bits (124), Expect = 6e-20 Identities = 327/503 (65%), Gaps = 3/503 (1%) Strand=Plus/Plus Query 71698 GCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCGGCATATTGTATAATTTCA 71757 |||| ||| || || || || || || ||||| | | ||| |||| || || || Sbjct 23705 GCAATAGACGCAAGGTTGCACACAGCAACCTCGTCTGGCGCGGTGTATTCGATTATCTCT 23764 Query 71758 GTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACAC 71817 ||||| || || ||||| |||||| || | ||||| ||||| ||| |||| | Sbjct 23765 GTGCAGAGGTTGCTACAAGAGATGGTCCCAAGGTTTTGCTGATTCGACTTCCTGTTGGCC 23824 Query 71818 GCATCCTTATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTC 71877 | ||||| || || || ||||| |||| || || || |||| || | || || | Sbjct 23825 GAGTCCTTGTACAGCATGTACGGATTACCGGTCTCTATTTGAGCCTCGAGGATGGCAAAC 23884 Query 71878 CAGACGACTCGAGCCTTTATTATATTCTTGT---ATCTCTTTTCTCTTTCGTATTGTGTA 71934 || | || | ||||| ||| | ||| || | | || | ||| || | || Sbjct 23885 CACAAATCTTGGGCCTTCATTGTCTTCCTGGCCAAGCCCTCAGTTTGTTCATACTTGGTG 23944 Query 71935 TATAATCGTTCGAACTCGTCTCCCCAAGCATTGTCTAATCCAGGACATTCATTCGGACAC 71994 || || ||||| | |||||||| | | | | ||| | ||| || || || Sbjct 23945 TACAACTCCTCGAATTGTTCTCCCCAGACCTCAGCAAGTCCTTTAGCTTCGTTGGGGCAG 24004 Query 71995 ATCAATGACCACTCTCCATCATCATTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGA 72054 | | ||||| || |||| || | || || ||||| |||||||| || | |||||| Sbjct 24005 AAGAGGGACCAGTCACCATTTTCCTCCACACGCTTCATGAAGAGATCTGGGACCCAAAGT 24064 Query 72055 GCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGG 72114 || |||| |||| | | || |||||| || || || ||||| |||||||||| Sbjct 24065 GCGTAGAATAAGTCTCGCGCGCGATTCTCCTCCTTGCCGGTGTTCTTGCGAAGATCGAGG 24124 Query 72115 AACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGCCGTTTG 72174 || | ||||| |||| |||||| ||||||| ||| | || | ||||| || ||| Sbjct 24125 AAAGATATAATGTCAGCATGCCAGGGTTCCAGGTAAACTGCAAAGGCTCCCTTTCGCTTG 24184 Query 72175 TTTCCTCCCTGATCTATGTATCT 72197 ||||| || || | ||||| Sbjct 24185 CCGCCTCCTTGGTCAACATATCT 24207 >seq1429 Length=23345 Score = 100 bits (110), Expect = 4e-16 Identities = 132/181 (73%), Gaps = 3/181 (2%) Strand=Plus/Plus Query 42175 AGAAAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACT 42234 ||||| | ||| || ||||| || ||||| || | ||||||||| || || | | || Sbjct 7518 AGAAATGTGGATACCCTCTACCGCTGCAAATGCTACAAGTCTCTCAGCA-AAGCTTCCCT 7576 Query 42235 GTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTAT 42294 | ||||||||| | | |||||||| |||||||| || |||||||| || || || || Sbjct 7577 CT--TGTATCCACCTCAGTGCCCAATCAGCCTTCTTCTTCACACAAGGGATTGTCTCAAT 7634 Query 42295 GGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACT 42354 ||||| || || || |||||| | | ||| | ||||| |||||||||||||| Sbjct 7635 AGCATTGAACAGTCTGTCTTTTTCTTGTGGGTTTTTGATGTATGTGTCGATCAAAAGACT 7694 Query 42355 A 42355 | Sbjct 7695 A 7695 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 670554579032120