Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physarum_20polycephalum_20[genbank_20GCA_5F000413255.3_202014-06-30] 69,687 sequences; 205,175,886 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq11685 123 4e-23 >seq11685 Length=1128 Score = 123 bits (136), Expect = 4e-23 Identities = 358/540 (66%), Gaps = 17/540 (3%) Strand=Plus/Plus Query 124999 TTCCCA-TCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGG 125057 |||||| || ||| |||||||| ||| | |||||| || || || | | ||| Sbjct 600 TTCCCAATCCAGTACCATGACATCTGGCGCAAGTACAAGGAGCAGGAGAGCTGCATCTGG 659 Query 125058 ACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAA 125117 |||||||| ||| |||| ||| ||| ||| || | || |||| || | ||| || Sbjct 660 ACGGTCGAGGAGATCGACCTGGGCAACGACATGAAGGACTGGGCAACGC---TGAACGAC 716 Query 125118 ACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTC 125177 ||||| | || || ||| | | |||||||| |||||| ||| || || ||| Sbjct 717 GGGGAGCGGCACTTCATCAAGCATGTGCTCGCCTTCTTCGCCGGCAGCGACGGCATAGTC 776 Query 125178 AACGACAATCTGTTGACACGATTCTCTCAAGAGTTGACCATTCCAGAGGTGTCGTGC-TT 125236 | ||| ||||| | || ||| || ||| | ||||||| | || || || Sbjct 777 ATCGAGAATCTCGCGCAGCGCTTCATGAGCGACGTGAAGGTGCCAGAGGCG-CGCGCATT 835 Query 125237 TTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGA 125296 ||||| ||||| | ||||| |||||| | |||||||| | ||||||| ||| | || Sbjct 836 CTACGGGTTCCAGCTGATGATGGAGAACATCCACTCGGAGACGTACTCTGTGCTGCTGGA 895 Query 125297 CATGTACATTCGCGATCCGCAACG-TAAACACATGCTCTTTAACGCAATCGACACGGTGC 125355 || ||||| || || | || | | || | ||| | |||| || | ||| | | Sbjct 896 CACGTACA-TCACGGACAGCGAGGAGAAGCTGCGGCTGCTGCACGCGATACAGACGATCC 954 Query 125356 CGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATC--GATGACGACAAGTCTTC 125413 ||| || | || ||||| | |||| | ||||||||| || | | || ||| Sbjct 955 CGTGCATCCAGAAGAAGGCGGAGTGGGCCGTGCGGTGGATCGGGAGCAGCGCGAGCTTTC 1014 Query 125414 GTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTT-CGGGTAGTT 125472 || | ||| | | || ||||| || |||||||| ||||||| ||||| ||| Sbjct 1015 -----AGGAGCGGCTGATCGGCTTTGCCGCGGTGGAGGGCATTTTCTTTTCCGGGTCGTT 1069 Query 125473 TTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACG 125532 ||| || | || ||||| ||||||||||| || ||||| || |||||| ||| |||| Sbjct 1070 CTGC-GCACTGTTCTGGCTGAAGAAGCGCGGTCTGATGCCAGGGCTGACGTTCAGCAACG 1128 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740413672594120