Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physarum_20polycephalum_20[genbank_20GCA_5F000413255.3_202014-06-30] 69,687 sequences; 205,175,886 total letters Query= NC_004333.2 Length=48247 Score E Sequences producing significant alignments: (Bits) Value seq2300 104 7e-18 seq4569 87.8 6e-13 >seq2300 Length=11727 Score = 104 bits (114), Expect = 7e-18 Identities = 80/94 (85%), Gaps = 2/94 (2%) Strand=Plus/Plus Query 17815 GGAGACGTGGCTGAGTGGTCGAAAGCGCTCCCCTGCTAAGGGAACGCCTGG--AGTAATC 17872 ||||||||||| ||| ||||||| || |||||||||||||||| | |||| || | Sbjct 665 GGAGACGTGGCCGAGAGGTCGAAGGCACTCCCCTGCTAAGGGAGCATCTGGGCCAAAACC 724 Query 17873 TGGGTCGAGGGTTCGAATCCCTCCGTCTCCGCCA 17906 ||| |||||||||||||||||||||||||||||| Sbjct 725 TGGATCGAGGGTTCGAATCCCTCCGTCTCCGCCA 758 >seq4569 Length=5133 Score = 87.8 bits (96), Expect = 6e-13 Identities = 107/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 13092 GTCCGACACCGACTGGCGTGTGCGCAGCCAGTTGTCGATGTACGGCATCGCGAGCTGCGT 13151 |||||| ||||||||||||||||| |||||||| |||| ||||||| || | |||| Sbjct 1976 GTCCGATACCGACTGGCGTGTGCGAAGCCAGTTTTCGACGTACGGCTTCATCATCTGCAA 2035 Query 13152 CATGCTGATGCCGGCGAACGAATACGTCGGCTTGAGCATGTCGCCGACTGGGCGCGATAC 13211 || | ||| ||||||| ||| | ||| ||||| ||||| || || ||||| || Sbjct 2036 CAGCGAAAGGCCTGCGAACGCATAGGCCGGTTTGAGAATGTCCGGTACCGGTCGCGACAC 2095 Query 13212 GATCGTGTGCAGGCGCGTCGCGTGGA 13237 | ||| ||||| ||| ||||| Sbjct 2096 AACCGTCATGAGGCGGCTCGAGTGGA 2121 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 154141137457846