Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physarum_20polycephalum_20[genbank_20GCA_5F000413255.3_202014-06-30] 69,687 sequences; 205,175,886 total letters Query= NC_004688.1 Length=110865 Score E Sequences producing significant alignments: (Bits) Value seq5875 93.3 3e-14 seq8130 87.8 1e-12 seq9104 82.4 5e-11 >seq5875 Length=3462 Score = 93.3 bits (102), Expect = 3e-14 Identities = 122/166 (73%), Gaps = 5/166 (3%) Strand=Plus/Minus Query 99393 CTTGATGAGGCCCGTCACCACATCCACGGAGGGCCGCTGCGTCGCCAGGACGAGATGAAT 99452 |||||||||||| || | || ||||| ||||| ||||| ||||| || | || || || Sbjct 243 CTTGATGAGGCCGGTGATGACGTCCACCGAGGGTCGCTGGGTCGCGAGAATCAGGTGGAT 184 Query 99453 GCCGGCCGCACGCGCCTTCTGCGCGATGCGGACAATGTTGGCCTCAACCTCTTTCTTG-T 99511 |||||| || ||||| ||||| |||| || | || | || | | |||||| Sbjct 183 GCCGGCGGCGCGCGCTTTCTGTGCGAGACGCGCGATCAATTCTTCGATC---TTCTTGCC 127 Query 99512 AGCCACCCATCATGAGATCAGCGAGTTCATCCACCACTACCACGAT 99557 |||| |||||||||| || |||||||| || | ||| |||||||| Sbjct 126 CGCCA-CCATCATGAGGTCGGCGAGTTCGTCGATCACGACCACGAT 82 >seq8130 Length=1982 Score = 87.8 bits (96), Expect = 1e-12 Identities = 163/234 (70%), Gaps = 4/234 (2%) Strand=Plus/Minus Query 99670 TCTGTAACCACGGGCTGGAGAAGGTGGGGGATACCGTTGTACGGGGTGAGCTCGACACAT 99729 || || || || ||| ||| || || || || || | |||| || ||||||| ||| Sbjct 1864 TCGGTCACGACCGGCGCGAGCAGATGCGGAATGCCTTCGTACACGGAAAGCTCGAG-CAT 1806 Query 99730 -TTGGGGTCGATCATGATGAGTTTGACCCGATCAGGGGTCGCCCGGTAGAGCAGCGAAAC 99788 || |||||||||||||| || || || || |||||| |||||| ||||| | Sbjct 1805 CTTCGGGTCGATCATGATCAGCCGTACGTCCTCGGGCGTCGCCTTGTAGAGGAGCGAGAG 1746 Query 99789 CAGCATTGAGTTGATGAAGCTGGACTTGCCCGATCCGGTCGCGCCAGCCACCAGCAGATG 99848 | ||| | ||||||| | ||||||||||| ||||| | ||| ||||| |||| || Sbjct 1745 GATCATCGCGTTGATGGCGACCGACTTGCCCGAACCGGTGGTGCCCGCCACGAGCATGTG 1686 Query 99849 CGGCATCTTAGCCAGGTTCAGGGA-GATGTCCTTGCCCTCGACGTCCTTGCCCA 99901 ||| ||| || | | || | || ||| | ||| ||| ||||||||||| Sbjct 1685 CGGGGCCTTGGCGA-GATCGGTGACGATCGGATGGCCGACGATGTCCTTGCCCA 1633 >seq9104 Length=1597 Score = 82.4 bits (90), Expect = 5e-11 Identities = 120/170 (71%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 99730 TTGGGGTCGATCATGATGAGTTTGACCCGATCAGGGGTCGCCCGGTAGAGCAGCGAAACC 99789 || || ||||||| ||| | |||| | || | | ||||| |||||||||||| | Sbjct 1301 TTCGGATCGATCAGGATCATGCGGACCTGCTCGGCGCTCGCCTTGTAGAGCAGCGACAGG 1242 Query 99790 AGCATTGAGTTGATGAAGCTGGACTTGCCCGATCCGGTCGCGCCAGCCACCAGCAGATGC 99849 | ||| | |||||| ||||||||||| ||||||| ||| ||||| ||||| || Sbjct 1241 ATCATCGCGTTGATCCCCACCGACTTGCCCGAGCCGGTCGTGCCGGCCACGAGCAGGTGG 1182 Query 99850 GGCATCTTAGCCAGGTTCAGGGAGATGTCCTTGCCCTCGACGTCCTTGCC 99899 |||||||| || || | | | | |||||| ||| ||||||||| Sbjct 1181 GGCATCTTCGCGAGATCGGCGCAAACCGGCTTGCCGCCGATGTCCTTGCC 1132 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354341997872982