Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physarum_20polycephalum_20[genbank_20GCA_5F000413255.3_202014-06-30] 69,687 sequences; 205,175,886 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq146 102 6e-17 seq2782 98.7 7e-16 seq30454 91.5 1e-13 seq22 89.7 4e-13 >seq146 Length=178297 Score = 102 bits (112), Expect = 6e-17 Identities = 146/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || || || |||||||| || || || |||||||| ||| || | | | || ||| Sbjct 156643 ACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGTCCATCCTCT 156702 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 | ||| ||||||||| | ||||||||||||||||| || |||||||| ||||| Sbjct 156703 AGTTGCTTGCCAGCGAAGATCAAACGTTGTTGGTCAGGGGGGATTCCTTCCTTGTCCTGG 156762 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 || ||| |||| ||| || ||||||||| | ||||| || | || ||||| || Sbjct 156763 ATCTTGGTCTTGACAGACTCGATGGTATCGGAGCTCTCTACCTCAAGAGTGATGGTCTTT 156822 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTG 15360 || || || || || || || || || Sbjct 156823 CCAGTGAGGGTCTTGACGAAGATCTG 156848 Score = 87.8 bits (96), Expect = 1e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || || || |||||||| || ||||| |||||||| ||| || | | | || || Sbjct 157057 ACCAAGTGGAGGGTGGACTCCTTTTGGATGTTGTAGTCGGAGAGGGTGCGTCCATCCTCG 157116 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 | ||| |||||||| | |||||||||||||||||| || |||||||| ||||| Sbjct 157117 AGTTGCTTGCCAGCAAAAATCAAACGTTGTTGGTCGGGGGGGATTCCTTCCTTGTCCTGG 157176 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 || ||| |||| || || ||||| ||| | || || || | || ||||| || Sbjct 157177 ATCTTGGTCTTGACGGACTCGATGGTGTCGGAGCTCTCGACCTCAAGAGTGATGGTCTTT 157236 Query 15335 CCTGTCAGAGTTTTTACAAAAAT 15357 || || || || || || || || Sbjct 157237 CCAGTGAGGGTCTTGACGAAGAT 157259 >seq2782 Length=10868 Score = 98.7 bits (108), Expect = 7e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || || ||||||||||| ||||| || ||||||||||| || | | |||| ||| Sbjct 9162 ACCAAGTGAAGGGTGGACTCTTTCTGAATGTTGTAATCAGAAAGGGTACGTCCGTCCTCT 9221 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 | ||| || ||||| | || | ||||||||||| || |||||||| ||||| Sbjct 9222 AGTTGCTTTCCAGCAAAGATGAGGCGTTGTTGGTCAGGGGGGATTCCTTCCTTGTCCTGG 9281 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 || || ||||||| || |||||||| | || || || |||||||| || ||| Sbjct 9282 ATCTTAGTCTTTACGGACTCGATGGTATCAGAGCTCTCGACCTCCAAGGTAATTGTCTTA 9341 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCATATT 15366 || || || || || || ||||| | ||||| Sbjct 9342 CCAGTGAGGGTCTTGACGAAAATCTAAATATT 9373 Score = 87.8 bits (96), Expect = 1e-12 Identities = 148/213 (69%), Gaps = 1/213 (0%) Strand=Plus/Plus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || || || |||||||| || || || |||||||| ||| || | | | || || Sbjct 8841 ACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGTCCATCCTCG 8900 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 | || ||||| || | ||||||||||||||||| || |||||||| ||||| Sbjct 8901 AGCTGCTTGCCGGCAAAGATCAAACGTTGTTGGTCAGGGGGGATTCCTTCCTTGTCCTGG 8960 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 || || |||| || || ||||| || | || || || ||||||||||||||| Sbjct 8961 ATCTTCGTCTTCACGGACTCAATGGTGTCAGAGCTCTCGACCTCCAAGGTAATGGTTTTA 9020 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCATATTT 15367 || || || || || || ||||| | || |||| Sbjct 9021 CCAGTGAGGGTCTTGACGAAAATCTACA-ATTT 9052 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || || ||||||||||| || || || ||||||||||| || | | | || ||| Sbjct 9782 ACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAATCAGAGAGGGTACGTCCATCCTCT 9841 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 | ||| ||||| || | || | |||||||||||| ||||||||||| ||||| Sbjct 9842 AGTTGCTTGCCGGCAAAGATAAGACGTTGTTGGTCAGGGGGAATTCCTTCCTTGTCCTGG 9901 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 || ||| |||| || || ||||| || | || || || | ||| ||||| || Sbjct 9902 ATCTTGGTCTTCACGGACTCGATGGTGTCTGAGCTCTCCACCTCGAGGGTGATGGTCTTG 9961 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || || || || || || || || ||||| Sbjct 9962 CCAGTGAGTGTCTTCACGAAGATCTGCAT 9990 >seq30454 Length=461 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || || ||||||||||| || ||||| || ||||| ||| || | | | || || Sbjct 32 ACCAAGTGAAGGGTGGACTCCTTTTGAATATTGTAGTCGGAGAGGGTGCGTCCATCCTCG 91 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 | || |||||||| | ||||||||||||||||| ||||||||||| ||||| | Sbjct 92 AGCTGCTTGCCAGCAAAGATCAAACGTTGTTGGTCAGGGGGAATTCCTTCCTTGTCCTGA 151 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 || ||| ||||||| || || || || | || || || | |||||| || ||| Sbjct 152 ATCTTGGTCTTTACTGACTCGATAGTGTCAGAGCTCTCAACCTCAAGGGTAATAGTCTTA 211 Query 15335 CCTGTCAGAGTTTTTACAAAAAT 15357 || || || || || || || || Sbjct 212 CCAGTGAGGGTCTTGACGAAGAT 234 >seq22 Length=338851 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220 ||||||||||| || || || |||||||| || || | || | || || | ||| Sbjct 332226 TGAAGGGTGGACTCCTTCTGAATGTTGTAGTCAGAAAGGGTCCTTCCATCCTCGAGTTGC 332285 Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTG 15280 ||||||||| | || | |||||||||||| || ||||| || ||||| || || Sbjct 332286 TTGCCAGCGAAAATGAGACGTTGTTGGTCAGGGGGGATTCCCTCCTTGTCCTGGATCTTA 332345 Query 15281 CTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTC 15340 |||| ||| | || || || || | || || || || |||||||| || ||||| Sbjct 332346 GTCTTGACACTCTCGATAGTGTCAGAGCTCTCGACCTCCAAAGTAATGGTCTTTCCTGTG 332405 Query 15341 AGAGTTTTTACAAAAAT 15357 ||||| || || ||||| Sbjct 332406 AGAGTCTTCACGAAAAT 332422 Score = 84.2 bits (92), Expect = 2e-11 Identities = 142/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || || || | |||| || ||||| |||||||| ||| || | | |||| || Sbjct 330913 ACCAAGTGCAAGGTGCTCTCCTTTTGGATGTTGTAGTCGGAGAGGGTGCGTCCGTCCTCG 330972 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 | || || || ||| | ||||| ||||||||||| || |||||||| ||||| Sbjct 330973 AGCTGCTTTCCGGCGAAGATCAAGCGTTGTTGGTCAGGGGGGATTCCTTCCTTGTCCTGG 331032 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 || ||| |||| ||| | || ||||||||| | ||||| || | ||| ||||| || Sbjct 331033 ATCTTGGTCTTCACACTCTCGATGGTATCGGAGCTCTCTACTTCGAGGGTGATGGTCTTG 331092 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTG 15360 || |||| || || || || || || Sbjct 331093 CCAGTCAAGGTCTTCACGAAGATCTG 331118 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361871597470467