Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physarum_20polycephalum_20[genbank_20GCA_5F000413255.3_202014-06-30] 69,687 sequences; 205,175,886 total letters Query= NC_004745.1 Length=30728 Score E Sequences producing significant alignments: (Bits) Value seq2320 167 5e-37 >seq2320 Length=11620 Score = 167 bits (184), Expect = 5e-37 Identities = 1038/1644 (63%), Gaps = 97/1644 (6%) Strand=Plus/Plus Query 946 AGCCACGGGTGCGGGATAAACGTTGAAGCCAGAATATTACGTTTGACGTAAATCGGTGAG 1005 ||| || |||||| || ||||| | | || | |||||||||| ||| |||| ||| Sbjct 8040 AGCAACCTGTGCGGAATGAACGTCGCCGATAGCACGTTACGTTTGAAGTAGATCGCCGAG 8099 Query 1006 CTGTGATGCACGGCAGCACGCAGACTTTTTGCCAGACCGGTAAAGCTGACCGGCGGCTCA 1065 | |||||| ||| | || || | |||| ||||| || | | ||||||||||| Sbjct 8100 CCGTGATGGACGCCGGCGCGGAATGTTTTAGCCAGGCCCGACCACGACACCGGCGGCTCG 8159 Query 1066 TACCATCTGCCGTTACTGATGCA---TTCGACGTAATCCAGAATGTCACGGCGGTCGAGT 1122 |||| ||||| | || || ||||||||| || ||||| || |||||| | | Sbjct 8160 AACCAGTTGCCGG--CCGAC-CACGTTTCGACGTAGTCAAGAATCTCGGCGCGGTCCATT 8216 Query 1123 ACCGGCACCGGCTCGCCAAAGGTGAATGCCTCCATTTTCGG-GGCGCTGGCGGT------ 1175 || ||||||| ||||| |||||||| ||||| |||| |||| | ||| Sbjct 8217 ACTGGCACCGCGTCGCCGAAGGTGAAGGCCTCGGCCCTCGGCGGCGTCGACGGGGCGGCC 8276 Query 1176 -CATT-GTTTTTGCCGCAGGTTGCGGTGTTTTCCCTTTTTTCTTGCTCATCAGTAAAACT 1233 || | | ||| | ||| |||| || | || |||||||| | |||| Sbjct 8277 GCAGTCGACAGTGCGGGCGGT-GCGGCGTG--CATGTTGCGCTTGCTCAATTTGAGAACT 8333 Query 1234 CCAGAATGGTGGA--TGTCAGCGGGGTGCTGATACCGGCGGTGAGTGGCTCATTTAACAG 1291 ||| || | || ||| |||| ||| || | | || || || || Sbjct 8334 CCATAAAGCCGGTATTGTTGGCGG-----TGACGCCTTCT---AACGGTTCGTTGCCGAG 8385 Query 1292 GGCGTGCATGGTCGCCCAGGCGAGGTCGGCGTGGCTGGCTTCCTCGCTGCGGCTGGCCTC 1351 ||||||| | ||||||||| ||||| ||||| | | || |||| | ||||| || || Sbjct 8386 CGCGTGCAGGCACGCCCAGGCAAGGTCCGCGTGTCCTGTTTGCTCGTTACGGCTCGCTTC 8445 Query 1352 ATAGGTGGCGCTGCGTCCGCTGCTGGTCATGGTCTTGCGGATAGCCATAAACGAGCTGGT 1411 ||| ||| | | |||||| |||||||| ||||| || ||||| ||||| | Sbjct 8446 ATAAGTGACTTTCTTTCCGCTCGCCGTCATGGTTTTGCGAATCGCCATGAACGATTGCGC 8505 Query 1412 GATGTCGGTGGCGCTGACGTCATATTCCAGACAGCCACGGCGGATAAC-GTCTTTTGCCT 1470 | ||| || | | | || |||| || | ||| | ||| || | | |||| Sbjct 8506 TAAGTCTGTCCATCCGGCATCGAATTCGAGCCGGCCCTTACCGATCACCGACAA--GCCT 8563 Query 1471 T-GAGCACCATTGCGGTT-TTCATTTCCGGTGTGTAGCGGATATCGCGCGCGGCAGGATA 1528 | |||||||| |||| || | ||| || | ||| || || |||| ||||| Sbjct 8564 TTGAGCACCAG-GCGGCCCTTAACTTCTGGCGAATAGTTGAGCGCGACCGCGTTCGGATA 8622 Query 1529 GAACGAGCGCACGAGCTGGAACACGCCGACACCGAGGCCGGTGGCATCAATACCGATGTA 1588 |||| | |||||||| | ||||| |||| ||| || | ||| || | || || Sbjct 8623 GAACTGCCTGACGAGCTGATAGACGCCCTGGCCGATGCCTGTCGTATCGATCGCCATATA 8682 Query 1589 TTCGACGTTATATTTTTCGGTGAGTTTGCGGATGGATTCAGCCTGGGTGGCAAAGTCCAT 1648 ||||||| |||| | |||| ||| || | || ||||| | | || ||||| Sbjct 8683 GGCGACGTTGTATTGCTGCGTGATCGCGCGTATCGCCTCGGCCTGTGCCTCGAAATCCAT 8742 Query 1649 GCCTTTCCACTGGTGACGCTCAAGTATTCTGAATTTGCCACCGGCCACCACCGGCGGTGC 1708 ||| ||| ||| | || | | || ||||| || | |||| |||||||||| Sbjct 8743 GCCGCGCCATTGGCACTTGTGCAGCACGCGAAACTTGCCCCCAGGCACCGCCGGCGGTGC 8802 Query 1709 CAGTACCACGC---ATCCGGCACTGTCGCCACGGT-GTGACGGGTCGTAACCAATCCATA 1764 | | |||| | ||||| ||| || || | | | ||||| || || | ||| | Sbjct 8803 GA---CGACGCTCAAGCCGGCCGAGTCACC-CGATAGCGCTGGGTCATAGCCGACCCACA 8858 Query 1765 CCGGGCGGGAGCCGAACGGATTGGCGGCAAAGGGTGCATAGTCTTCCCATTCTTCCAGCG 1824 |||||| ||||||| || || |||| Sbjct 8859 GCGGGCGATAGCCGAAAGGGCGGG--GCAA------------------------------ 8886 Query 1825 TGTCGACCATGCAGCGTTGCAGCTCCTCGAACGGGAACACCGATGCCTTGTCGTCAACAA 1884 ||||||||||| || || | ||| ||| |||||| | ||| || | ||||| | || Sbjct 8887 --TCGACCATGCAACGCTGTAAATCCGCGAGCGGGAAAATCGACGCTGTATCGTCGATAA 8944 Query 1885 ATTCACACATGAACAGGTTTTTAAAATCGTCGGCGCTGTTTTCGCGTTTGAGCTGCTCAA 1944 | | ||||| ||||| || | || | ||||||| ||| | |||| | | Sbjct 8945 ACTGGCACATCAACAGATTGGCGTATTCCTGCGCGCTGTATTCAAGACGTAGCTCGCCGA 9004 Query 1945 TGTCGAACAGCGTGCAGCCGCCTTTCAGGGCGTCCTCAATGGTGACAATCTGCCGCCACT 2004 | |||||||| ||| ||||| | ||| ||||| | ||| || ||||| ||||| | Sbjct 9005 TATCGAACAGGTCGCACCCGCCGGCGACGGCATCCTCGACGGTCACGATCTGGCGCCATT 9064 Query 2005 GGCCGTCCGCACAGAGAAGACCTCCGGCAAGGGCGTTATGACTGACGTCGATTTCCACGC 2064 | | ||| | |||||| | || ||||| || || || | | ||||| | | || Sbjct 9065 GCCTATCCTCGCAGAGACGGCCGCCGGCGAGCGCCTTGCGCGTTACGTCCAGATGCA--- 9121 Query 2065 GTTCGGCGGCGCTGGCGCGTCCCCGGTTGAACAGTTCACCCGACCAGAACGGGTAGGCGT 2124 | | || | | ||||| || |||||||| | || || |||||| | |||||| Sbjct 9122 GATGATCGACCTTTGCGCGGCCTCGGTTGAAGTGCTCGCCACTCCAGAAGGTATAGGCGG 9181 Query 2125 CGTGCGCCAGCGTGGACGGGGTGGAGAAATAGGTCGAGC-GCAGGTGGCTCTGTGAGGCC 2183 | || | | | ||||| |||||||||||||| | || | | || ||| Sbjct 9182 CATGTCCAATGCTCGACGGCGTGGAGAAATAGGTTTTTCTCCATTTTTTTGTGCATCGCC 9241 Query 2184 ATACCTGATGCCACCTTACGCAGTACCTGAAAATTCGGGA-TCCAGAAAATCTCGTCGAC 2242 || || || || |||||| ||| | | |||| || | |||| || ||||||| Sbjct 9242 ATGCCCGACGCGACCTTATTCAGCTCGCG-AAATCCGCCAGTCCAAAAGTATTCGTCGAA 9300 Query 2243 GTACAGGTCGCCGTTATGGCTCTGTGCGGTGTTGGAGTTGGTGCCGAGAAAAATCAGTTT 2302 || | | ||||| || ||||||||||||| | ||| ||||| ||||| | | Sbjct 9301 ATAGAAATTGCCGTGATAGCTCTGTGCGGTGCGCGCGTTCGTGCCTAGAAAGCGTAACGT 9360 Query 2303 TGCGCCGTTATTGCCCAGGACAATCGGGTCACCGGTCAG---GTCAACGTCAACCAGACG 2359 |||| | ||| || || |||||||| || || || | || || | || || Sbjct 9361 --CGCC-TCATTCGGCAAGATGATCGGGTCGCCTGTTAGCTCGACATCGGCGGCCTCGCG 9417 Query 2360 GGCAAA--GGCGATGATGTATTCGCG-GAACACATACGCCTGCGTTTTACTGGCCGACAG 2416 ||||| ||| | ||||| | ||| ||| || | ||| || | || ||||||||||| Sbjct 9418 CGCAAACTGGCAA--ATGTACT-GCGTGAAAACGTGCGCGTGTGCCTTGCTGGCCGACAG 9474 Query 2417 AAAAATCTGGTTATGACCGGTTTTCAGGGCACGCAGCAGCGCCTCGCGGGAAAAATAAAA 2476 ||||||||| | | ||||| | | || ||| ||||| || | ||||| | Sbjct 9475 AAAAATCTGATCGCGGCCGGTCGTGATCGCGTCGTCCAGTGCCTCTCGTGCGAAATACCA 9534 Query 2477 CGTCGCGCCAATCTGGCGGGATTTCAGGATATCTCGGATGCGGTGCTCAAGCCCGGCGCG 2536 ||||||||| ||||| || || || || || | || ||| ||| | |||| || Sbjct 9535 CGTCGCGCCGATCTGCCGCGACTTGAGAATGTTGCGCGTGC---GCTGATGCCCTTGCCG 9591 Query 2537 ATACCAGTGCAACTGATATTCGAA 2560 ||||||| | ||||| ||||| Sbjct 9592 ATACCAGACCTTTTGATAGTCGAA 9615 Score = 158 bits (174), Expect = 2e-34 Identities = 284/408 (70%), Gaps = 8/408 (2%) Strand=Plus/Plus Query 358 CCCATCAACTGAAAGGGGATGCGGTGCGCGTCCAGCAGGTCAGCGGCGC-TGGCTTTTTT 416 ||||| | ||| ||||||||| ||||| | |||| ||| || ||| || | || || Sbjct 7452 CCCATGAGCTGCGGGGGGATGCGATGCGCCGCGAGCAAGTCGTCG-CGCGTGACATTCTT 7510 Query 417 GATATTaaaaaaaTCGTCCTTCGTTGCCACTTCACTGAGCGGGATAATTTTGATGCCGTC 476 |||||| ||||| ||||| |||| | || || | || || | | ||| ||||| Sbjct 7511 GATATTGAAAAACTCGTCTTTCGCCGTGACCTCGGAAACGGGAATGAGCTGGATACCGTC 7570 Query 477 GGCTTTCCCCTGTGGGGCATAGAGAAACAGATTTTTAAAGTTGT-TGCGGCCTTTCGACT 535 || || | || || || | ||||| ||| || ||| || |||| | | Sbjct 7571 TTTCTTGCCGTTCGGCGCGTACATGAACAGGTTTCGGAAATTGCCTGGCCCCTTGCTGTT 7630 Query 536 TCACCATGTTTTCGCGGAGCATTTCGATATCG--TTGCGATCCTGCACGGCATCAGTGAC 593 | | | | | |||| | | |||| |||| |||||| |||| | ||||| || | Sbjct 7631 TTTCAACGCCT-CGCGCATGTTGTCGACATCGGTTTGCGA--CTGCGCCGCATCCGTCAT 7687 Query 594 GTACATGATATATCCGGCATGAGCGCCGTTTTCGTAATACTTGCGGCGGAACAGCGTGGC 653 ||||| |||| | || || || | || || ||||||||| ||||| || ||||| || Sbjct 7688 GTACAGGATAAAGCCCGCGTGCGAACCATTCTCGTAATACCGCCGGCGAAATAGCGTCGC 7747 Query 654 CGACTCATTCAGCCAGGCAGAGTTAAGGGCGCTGAGATATTCCGGCAGGCCGTACAGCTC 713 |||||| |||| ||| || | || ||||||| ||||||||| |||| ||| |||| ||| Sbjct 7748 CGACTCGTTCAACCATGCCGCGTGCAGGGCGCCGAGATATTCGGGCAAGCCATACACCTC 7807 Query 714 CTGATTAATATCCGGCTCCAGCAGATGAAACACGGAGCCGGGCGCGAA 761 ||||||||| ||||| |||| || ||| ||||| |||| |||||| Sbjct 7808 CTGATTAATGTCCGGTTCCATCAAGTGATGCACGGTCCCGGCCGCGAA 7855 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 98126729626860