Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physarum_20polycephalum_20[genbank_20GCA_5F000413255.3_202014-06-30] 69,687 sequences; 205,175,886 total letters Query= NC_004813.1 Length=57930 Score E Sequences producing significant alignments: (Bits) Value seq2996 563 3e-156 seq2099 170 7e-38 >seq2996 Length=8617 Score = 563 bits (624), Expect = 3e-156 Identities = 1102/1618 (68%), Gaps = 23/1618 (1%) Strand=Plus/Minus Query 28188 ACGGCCTGCCCGGACTGGGCAGAGCGCCTGAAAAAGGGGCTGTCGATTATTCCGGCCCCG 28247 || || || || || ||||| || || || || | ||||| |||||| ||||| | || Sbjct 7386 ACTGCTTGTCCCGATTGGGCCGAACGGCTCAAGACGGGGCGGTCGATCATTCCACCGCCA 7327 Query 28248 ATTTATCCGGATCAGGCTGCACATGCACTGGCGATTTTTAAACAACTGCGGATTGTGGAT 28307 || | || || ||||| | || || || || | || || || || ||||||||| Sbjct 7326 ATCTTCCCCGAGCAGGCAGAGCAGGCGCTTGCTGTGTTCAAGGAATTGAAGATTGTGGAC 7267 Query 28308 GCACCGGGCAGCCCGACGTTCGGGGAGTCCTGCGCACAGTGGGTGTTTGACCTGGTGGCG 28367 || ||||| |||||||||||||| ||||| | || || ||||| || || ||||| ||| Sbjct 7266 GCGCCGGGTAGCCCGACGTTCGGCGAGTCATCGGCGCAATGGGTCTTCGATCTGGTCGCG 7207 Query 28368 GCCCTGTTTGGCTCCTACGATGCGCAGACCGGTGTTCGCCATATCAAGGAAGTTTTTATC 28427 | | || ||| | ||||| || ||| ||| ||||| |||| || || || Sbjct 7206 TCGATCTTCGGCGCATACGACGCTGAGAACGGGCGTCGCCTGATCACAGAGTGGTTCGTC 7147 Query 28428 CTTATCCCGaaaaaaaaCAGCAAGTCCACGCTGGCTGCCGGGATCATGATGACGGCGCTG 28487 ||||| || || |||||||| || |||||||| || || |||||||||||||| || Sbjct 7146 TGCATCCCCAAGAAGAACAGCAAATCGACGCTGGCCGCAGGAATCATGATGACGGCCATG 7087 Query 28488 TTACTGAACTGGCGGCAGGCGGCGGGCTACACCATTCTGGCCCCGACTGTGGAGGTGGCG 28547 | ||||| ||||| | |||||| ||| | ||||| || || || | ||||| || Sbjct 7086 ATCCTGAATTGGCGCATGTCGGCGGAATACGCGATTCTCGCGCCAACGATCGAGGTCGCC 7027 Query 28548 GCTAACGCCTTTAATCCTGCGCGGGATATGGTCAGACGTGACGATGATCTGGATGACCTC 28607 |||| ||| || || || ||||| | | || || || || || |||||| Sbjct 7026 AATAACAGCTTCGCGCCGAGTCGCGACATGGTGAAGCACGAGGACGAGCTCGACGACCTC 6967 Query 28608 TGCCAGGTGCAGACACATATCCGGACCATCACCCACAGGGTGACGGACACTACCCTTAAG 28667 | |||||||||| |||| ||| ||| ||||| ||| | || | | | | || ||| Sbjct 6966 TTCCAGGTGCAGGCACACATCAAGACGATCACGCACCGCACGAGCGGCGCGATGCTGAAG 6907 Query 28668 GTGGTGGCAGCCGATCCGAATACGGTGTCCGGTATCAAGTCCGTGGGGACACTGATTGAT 28727 || || || || ||| |||| ||||| ||||||| ||| ||| || || ||||| || Sbjct 6906 GTCGTCGCGGCTGATTCGAACACGGTTTCCGGTAAGAAGAGCGTCGGCACGCTGATCGAC 6847 Query 28728 GAACTGTGGCTGTTTGGCAAGCAGTACAAAGCGGAAGACATGTTACGTGAAGCCATCGGC 28787 || |||||||| || ||||| ||| | || || |||||| | || || || | ||| Sbjct 6846 GAGCTGTGGCTTTTCGGCAAACAGCCGGATGCTGAGGACATGCTGCGCGAGGCGACCGGT 6787 Query 28788 GGGCTTGCCTCCCGTCCGGAAGGATTTGTGGTGTACACAACCACCCAGTCGAATGAGCCG 28847 || || || || || |||||||| || || | ||| || || |||||||| || ||| Sbjct 6786 GGTCTGGCTTCGCGCCCGGAAGGCTTCGTCATATACCTGACGACGCAGTCGAACGACCCG 6727 Query 28848 CCAGCCGGGGTGTTCAGACAGAAACTGCAGTACGCCCGGGATGTCCGTGACGGCAAAATT 28907 || || || ||||| || || || | ||||| || || || || |||||||| ||| Sbjct 6726 CCTGCAGGTGTGTTTCTGCAAAAGCTTCGATACGCGCGCGACGTGCGCGACGGCAAGATT 6667 Query 28908 CATGATCCGCACTTTCTGCCGGTGATATTTGAACACCCTCCTGAAATGGTGGAAAGCGGG 28967 || ||| ||| |||||||||| || || || || || |||||| | | ||| | Sbjct 6666 GTCGACCCGTGCTTCGTGCCGGTGATCTTCGAGCATCCGCCCGAAATGATCGCCAGCAAG 6607 Query 28968 GCTCACCTGCTGATGGAAAACCTCGCCATGGTCAATCCGAATCTCGGTTATTCGGTGGAT 29027 | |||||| | | ||||||||||| |||||||| ||||| |||| | ||| || ||| Sbjct 6606 GAGCACCTGAAGGTCGAAAACCTCGCGATGGTCAACCCGAACTTCGGATTTTCCGTCGAT 6547 Query 29028 GAGGCTTTTCTGTACCGGGAGTACCGTAAAGCCCGGGAGGCTGGTGAGGAAGCATTTCGT 29087 |||| | ||| | || |||| || || || ||| | || || || | || || Sbjct 6546 CAGGCGTATCTCGAGCGCGAGTTTCGCAAGGCGAAGGAAACGGGCGAAGAGTCGTTCCGC 6487 Query 29088 GGCTTCATGTCAAAACATGCCAATGTGGAAATTGGTCTTGCCCTGCGTTCTGACCGCTGG 29147 |||||| | | || ||||| || || || || || || || ||||| || || |||||| Sbjct 6486 GGCTTCCTTGCGAAGCATGCGAACGTCGAGATCGGCCTGGCACTGCGCTCGGATCGCTGG 6427 Query 29148 ACGGGTGCGGATTTCTGGGA----GCAGCAGGGCAGG-CGCGTCAGCCTGGACGATATCC 29202 | |||||||| |||||||| || || | || || |||| || || ||||| | | Sbjct 6426 GCCGGTGCGGACTTCTGGGAAGGCGCCGC-GCGCGGGACGCG-CACGCTAGACGAACTGC 6369 Query 29203 TGCAGCGCGCT--GATGTGGT-GACGGTGGGGATTGACGGCGGGGGCCTGGATGATCTGC 29259 | ||||||| || ||||| ||| || |||||||||||||| ||||| ||||| |||| Sbjct 6368 T--TGCGCGCTGCGAGGTGGTCGAC-GTTGGGATTGACGGCGGCGGCCTCGATGACCTGC 6312 Query 29260 TGGGAATGTACGTGATTGGCCGTGACAGGGAAACCCGCGAATGGCTGGGCTGGGGCCATG 29319 | || | ||| | || || || | | ||| || | ||||| | ||| |||| Sbjct 6311 TCGGGTTTGCTGTGGTGGGTCGAGAGCGCGGCACCGGCAACTGGCTAGCGTGGTCGCATG 6252 Query 29320 CCTGGGCGCATGAAACCGCGGTGGTCAGACGGAAGAGTGAGGCATCCCGGTTTCAGGATT 29379 ||||||||||| ||| | | | | || ||| || || | || ||| | |||| Sbjct 6251 CCTGGGCGCATCCGTCCGTGCTCGAGCGGCGAAAGTCCGAAGCGGCACGTTTTAACGATT 6192 Query 29380 TTGTGGCCTGTGGAGACATGACGATTGTCCGTCGGGTCGGGGATGACACGGCGGAAGTGG 29439 || | | || ||| ||||| | ||| | |||| || ||| || || || | Sbjct 6191 TTTCTGACGACGGCGACCTGACGCTGGTCGAGCACATCGGCGAGGACGTCGCCGATGTCG 6132 Query 29440 CGGA----GTATGTGCGTCGTATTCAT-GAGGCTGAGTTACTGGAGCATATCGGTATTGA 29494 |||| || | || | || | | | ||| || || | ||||| | || Sbjct 6131 CGGATCTCGTCAGCCAGTGCGAGTCGTCGGGTCTG-----CTCGACAAGGTCGGTGTCGA 6077 Query 29495 CCCGTCAGGTGTGGGGCAGATTCTGGATTCACTGGCGGAAGCCGGGATCCCCGACGGAAT 29554 |||| | || | || | | || || | |||| || || || | || || | | Sbjct 6076 CCCGGCCGGCATCGGCGCGGTGCTCGACGCGCTGGTCGATGCTGGTGTTCCAGAGGACAA 6017 Query 29555 TGTTGTGGGGATAAGCCAGGGCTGGAAGCTGGGCGGGGCCATAAAAACCACCGAGCGCAA 29614 || | || || |||||||||||||| || || || || || || |||||||||| Sbjct 6016 GGTGATCGGCATTTCGCAGGGCTGGAAGCTCGGGGGTGCAATCAAGACGACCGAGCGCAG 5957 Query 29615 ACTGGCTGAGGGAGTACTGGTGCATGGTGGTCAGCCACTGATGGCCTGGTGCGTTGGCAA 29674 | || ||||| | ||| |||| || || || | |||||||||||||||| ||||| Sbjct 5956 GATCGCCGAGGGCGCGCTGCTGCACGGCGGCCAACGCATGATGGCCTGGTGCGTCGGCAA 5897 Query 29675 TGCCCGGGTGGAGCCTAAAGGTAACGCCATTCTTATTACCAAACAGGCCAGCGGACGGGG 29734 ||| || || ||||| || || || || || ||||| |||||||| |||||| || Sbjct 5896 TGCGCGCGTCGAGCCGCGCGGCAATGCAATCCTGATTACGAAACAGGCAAGCGGATCGGC 5837 Query 29735 GAAAATTGACCCGCTGATGGCGCTCTTCAATGCGGTATCCCTGATGTCCCTGAATCCG 29792 || || |||||||||||||| || || || || || || |||| ||| || ||| Sbjct 5836 CAAGATCGACCCGCTGATGGCACTTTTTAACGCCGTGTCGTTGATCAGCCTCAACCCG 5779 >seq2099 Length=12992 Score = 170 bits (188), Expect = 7e-38 Identities = 559/853 (66%), Gaps = 22/853 (3%) Strand=Plus/Plus Query 52371 GAAGTCCGTCAGCGGGCGATTCGTATGGTTCTGGAAAGTCAGGATGAATATGACTCACAG 52430 || || ||| |||||||| | || ||||| | || || | ||||| || | ||| Sbjct 5568 GAGGTTCGTGAGCGGGCGGTCCGAATGGTCTTCGAGCACCAACACGAATACGAGACGCAG 5627 Query 52431 TGGGCGGCAATTTGTTCCATTGCCCCAAAGATTGGC-TGTACGCCGGAGACTCTGCGTGT 52489 ||| ||| || | || || ||| | ||||| || ||| ||| ||||| || || Sbjct 5628 GGGGTGGCGATCCGCTCGATCGCCTCGAAGATGGGGATGT-CGCGTGAGACGCTTCGCAA 5686 Query 52490 CTGGGTTCGCCAGCATGAGCGGGATACCGGGGGCGGTGATGGAGGGCTCACCACCGCTGA 52549 |||| | |||| |||||| ||| || || | | ||| | |||| || || | || Sbjct 5687 CTGGATCATCCAGGCTGAGCGTGAT--CGTGGCCAGCGATCGGGGGCG-ACGACTCCCGA 5743 Query 52550 ACGTCAGCGTCTGAAAGAGCTGGAGCGTGAAAATCGTGAACTGCGCCGCAGTAACGATAT 52609 | ||| ||||| || |||||||| || ||||| ||| ||||| ||||| || Sbjct 5744 GCTGGCGCGCCTGAAGGAACTGGAGCGCGAGAATCGCGAATTGCGCACGGCCAACGAGAT 5803 Query 52610 CCTTCGCCAGGCTTCCGCTTATTTTGCGAAGGCGGAGTTCGACCGCCTCTGGAAAAAATG 52669 |||||| |||| ||||| ||||| || |||||||| ||||||||| | ||| ||| Sbjct 5804 TCTTCGCAAGGCCTCCGCGTATTTCGCACAGGCGGAGCTCGACCGCCGATCGAAGCCATG 5863 Query 52670 ATGCCACTGCTGGATAAGCTGCGTGAGCAGTACGGGGTCGGACCGCTATGCAGCGAACTG 52729 || | | | || ||| || || ||||| |||| ||| | ||| || ||| Sbjct 5864 ATTGCGTTCATCGACGAGCATCGCGACGTCTACGGTGTCGAGCCGATCTGCCGCCTGCTG 5923 Query 52730 CATATTGCCCCGTCAACGTATTACCACTGTCA-GCA--ACAGCGACATC-ATCCGGATAA 52785 | || || ||||| |||||||||| | || || || ||| || | ||||||| | Sbjct 5924 CCGATCGCGCCGTCGACGTATTACC---GGCACGCCGGACGGCG-CAGCGATCCGGAGCA 5979 Query 52786 ACGCAGTGCCCGTGCGCAGCGCGATGACTGGCTGAAGAAAGAGATACAGCGCGTATACGA 52845 | | || || ||| ||||||| |||||| || | | || | || Sbjct 5980 ATGGCCAGCGCGAGCGTGTCGCGATGCTCAACTGAAGGGCCTCATCCGGGTGGTCTGGGA 6039 Query 52846 TGAAAATCACAAGGTATACGGTGTGCGTAAAGTCTGGCGTCAGTTGTTACGGGAAGGTAT 52905 | || || || |||||||| || |||||||| |||||| | || || || | Sbjct 6040 CAAGAACTTTGGCGTGTATGGTGTGCGCAAGGTCTGGCGCCAGTTGCTGCGCGATGGCGT 6099 Query 52906 CAGAGTGGCCAGATGCACTGTGGCACGTCTCATGGCGGTTATGGGACTTGCCGGTGTTCT 52965 | || || | ||||| || || || || ||| || ||||| || | ||||| | Sbjct 6100 GAAGGTCGCGCGCTGCACGGTTGCGCGCCTGATGAAGGCGATGGGCCTCGAAGGTGTGCG 6159 Query 52966 CCGGGGTAAAAAGGTCCGTACGACCATCAGCCGGAA-AGCCGTTGCCGCAGGCG----AC 53020 || || | || | || || |||| || | || |||||| || || Sbjct 6160 GCGTGGGCGCCGGATCAGGACAACG--CAGCGCGACGATGCGGTGCCGCGCCCGCTGGAC 6217 Query 53021 CGCGTAAACCGTCAGTTCGTGGCAGAACGACCTGACCAGCTGTGGGTGGCTGATTTTACT 53080 || || || ||||||||| ||| || || || || ||||||||| || |||||||| Sbjct 6218 CGGGTCAAACGTCAGTTCCAGGCCGATCGGCCCAACGCGCTGTGGGTCGCGGATTTTACC 6277 Query 53081 TACGTCAGCACATGGCAGGGCTTCGTCTATGTGGCGTTCATCATTGATGTGTTTGCCGGA 53140 || | | |||||| ||||| || || ||||| ||| | | ||||||||||| | Sbjct 6278 TATTGCTGGACATGGTCCGGCTTTGTGTACGTGGCCTTCGTGACCGATGTGTTTGCGCGG 6337 Query 53141 TACATTGTGGGGTGGCGGGTCTCATCGTCCATG-GAGACGACATTCGTGCTGGATGCACT 53199 || || || ||||| || ||| | || ||| || ||| ||||||||||| || || Sbjct 6338 CGTATCGTCGGTTGGCGCGTGTCAGCCTCGATGCGAACTGAC-TTCGTGCTGGACGCGCT 6396 Query 53200 GGAGCAGGCGTTA 53212 | | ||||||||| Sbjct 6397 GAACCAGGCGTTA 6409 Score = 138 bits (152), Expect = 4e-28 Identities = 549/851 (65%), Gaps = 20/851 (2%) Strand=Plus/Plus Query 49531 GAAGTCCGTCAGCGGGCGATTCGTATGGTTCTGGAAAGTCAGGATGAATATGACTCACAG 49590 || || ||| |||||||| | || ||||| | || || | ||||| || | ||| Sbjct 5568 GAGGTTCGTGAGCGGGCGGTCCGAATGGTCTTCGAGCACCAACACGAATACGAGACGCAG 5627 Query 49591 TGGGCGGCAATTTGTTCCATTGCCCCAAAGATTGGC-TGTACGCCGGAGACTCTGCGTGT 49649 ||| ||| || | || || ||| | ||||| || ||| ||| ||||| || || Sbjct 5628 GGGGTGGCGATCCGCTCGATCGCCTCGAAGATGGGGATGT-CGCGTGAGACGCTTCGCAA 5686 Query 49650 CTGGGTTCGCCAGCATGAGCGGGATACCGGGGGCGGTGATGGTGGGCTCACCAGCGCTGA 49709 |||| | |||| |||||| ||| || || | | ||| | |||| || | | || Sbjct 5687 CTGGATCATCCAGGCTGAGCGTGAT--CGTGGCCAGCGATCGGGGGCG-ACGACTCCCGA 5743 Query 49710 ACGTCAGCGTCTGAAAGAGCTGGAACGTGAAAATCGTGAACTGCGCCGCAGTAACGATAT 49769 | ||| ||||| || ||||| || || ||||| ||| ||||| ||||| || Sbjct 5744 GCTGGCGCGCCTGAAGGAACTGGAGCGCGAGAATCGCGAATTGCGCACGGCCAACGAGAT 5803 Query 49770 CCTTCGCCAGGCTTCCGCTTATTTTGCGAAGGCGGAGTTCGACCGCCTCTGGAAAAAATG 49829 |||||| |||| ||||| ||||| || |||||||| ||||||||| | ||| ||| Sbjct 5804 TCTTCGCAAGGCCTCCGCGTATTTCGCACAGGCGGAGCTCGACCGCCGATCGAAGCCATG 5863 Query 49830 ATGCCACTGCTGGATAAGCTGCGTGAGCAGTACGGGGTCGGACCGGTATGCAGCGAACTG 49889 || | | | || ||| || || ||||| |||| ||| | ||| || ||| Sbjct 5864 ATTGCGTTCATCGACGAGCATCGCGACGTCTACGGTGTCGAGCCGATCTGCCGCCTGCTG 5923 Query 49890 CATATTGCCCCGTCAACGTATTACCATTGTCA-GCA--ACAGCGACATC-ATCCGGATAA 49945 | || || ||||| |||||||||| | || || || ||| || | ||||||| | Sbjct 5924 CCGATCGCGCCGTCGACGTATTACC---GGCACGCCGGACGGCG-CAGCGATCCGGAGCA 5979 Query 49946 ACGCAGTGCCCGTGCGCAGCACGATGACTGGCTGAAGAAAGAGATACAGCGCGTATACGA 50005 | | || || ||| | ||||| |||||| || | | || | || Sbjct 5980 ATGGCCAGCGCGAGCGTGTCGCGATGCTCAACTGAAGGGCCTCATCCGGGTGGTCTGGGA 6039 Query 50006 TGAAAATCACCAGGTATACGGTGTGCGTAAAGTCTGGCGTCAGTTGTTACGGGAAGGTAT 50065 | || || || |||||||| || |||||||| |||||| | || || || | Sbjct 6040 CAAGAACTTTGGCGTGTATGGTGTGCGCAAGGTCTGGCGCCAGTTGCTGCGCGATGGCGT 6099 Query 50066 CAGAGTGGCCAGATGCACTGTGGCACGTCTCATGGCAGTTATGGGACTTGCCGGTGTTCT 50125 | || || | ||||| || || || || ||| | ||||| || | ||||| | Sbjct 6100 GAAGGTCGCGCGCTGCACGGTTGCGCGCCTGATGAAGGCGATGGGCCTCGAAGGTGTGCG 6159 Query 50126 CCGGGGTAAAAAGGTCCGCACTACCGTCAGCCGGAA-AGCCGTTGCCGCATGCG----AC 50180 || || | || | || || |||| || | || |||||| || || Sbjct 6160 GCGTGGGCGCCGGATCAGGACAACG--CAGCGCGACGATGCGGTGCCGCGCCCGCTGGAC 6217 Query 50181 CGCGTAAACCGTCAGTTCGTGGCAGAACGTCCAGACCAGTTGTGGGTGGCTGATTTTACC 50240 || || || ||||||||| ||| || || || || | ||||||| || ||||||||| Sbjct 6218 CGGGTCAAACGTCAGTTCCAGGCCGATCGGCCCAACGCGCTGTGGGTCGCGGATTTTACC 6277 Query 50241 TGGGTAAGCACATGGCAGGGCTTCGTTTATGTGGCGTTCATCATTGATGTGTTCGCCGGA 50300 | | |||||| ||||| || || ||||| ||| | | |||||||| || | Sbjct 6278 TATTGCTGGACATGGTCCGGCTTTGTGTACGTGGCCTTCGTGACCGATGTGTTTGCGCGG 6337 Query 50301 TACATCGTGGGATGGCAGGTCTCATCATCCATGGAAACAACATTCGTGCTGGATGCACTG 50360 ||||| || |||| || ||| | || ||| ||| ||||||||||| || ||| Sbjct 6338 CGTATCGTCGGTTGGCGCGTGTCAGCCTCGATGCGAACTGACTTCGTGCTGGACGCGCTG 6397 Query 50361 GAGCAGGCGTT 50371 | |||||||| Sbjct 6398 AACCAGGCGTT 6408 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 185101095847448