Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physarum_20polycephalum_20[genbank_20GCA_5F000413255.3_202014-06-30] 69,687 sequences; 205,175,886 total letters Query= NC_005056.1 Length=32684 Score E Sequences producing significant alignments: (Bits) Value seq2320 165 2e-36 >seq2320 Length=11620 Score = 165 bits (182), Expect = 2e-36 Identities = 815/1285 (63%), Gaps = 67/1285 (5%) Strand=Plus/Plus Query 1289 AGGGCGTGCATGGTCGCCCAGGCGAGGTCGGCGTGGCTGGCTTCCTCGCTGCGGCTGGCC 1348 || ||||||| | ||||||||| ||||| ||||| | | || |||| | ||||| || Sbjct 8384 AGCGCGTGCAGGCACGCCCAGGCAAGGTCCGCGTGTCCTGTTTGCTCGTTACGGCTCGCT 8443 Query 1349 TCATAGGTGGCGCTGCGTCCGCTGCTGGTCATGGTCTTGCGGATAGCCATAAACGAGCTG 1408 ||||| ||| | | |||||| |||||||| ||||| || ||||| ||||| Sbjct 8444 TCATAAGTGACTTTCTTTCCGCTCGCCGTCATGGTTTTGCGAATCGCCATGAACGATTGC 8503 Query 1409 GTGATGTCGGTGGCGCTGACGTCATATTCCAGACAGCCACGGCGGATGAC-GTCTTTTGC 1467 | | ||| || | | | || |||| || | ||| | ||| || | | || Sbjct 8504 GCTAAGTCTGTCCATCCGGCATCGAATTCGAGCCGGCCCTTACCGATCACCGACAA--GC 8561 Query 1468 CTT-GAGCACCATTGCGGTT-TTCATTTCCGGCGTGTAGCGGATATCGCGCGCGGCGGGA 1525 ||| |||||||| |||| || | ||| |||| ||| || || |||| ||| Sbjct 8562 CTTTGAGCACCAG-GCGGCCCTTAACTTCTGGCGAATAGTTGAGCGCGACCGCGTTCGGA 8620 Query 1526 TAGAACGAGCGCACGAGCTGGAACACGCCGACACCGAGGCCGGTGGCATCAATACCGATG 1585 |||||| | |||||||| | ||||| |||| ||| || | ||| || | || Sbjct 8621 TAGAACTGCCTGACGAGCTGATAGACGCCCTGGCCGATGCCTGTCGTATCGATCGCCATA 8680 Query 1586 TATTCGACGTTGTATTTTTCGGTGAGTTTGCGGATGGATTCCGCCTGAGTGGCAAAGTCC 1645 || |||||||||||| | |||| ||| || | || ||||| | | || ||| Sbjct 8681 TAGGCGACGTTGTATTGCTGCGTGATCGCGCGTATCGCCTCGGCCTGTGCCTCGAAATCC 8740 Query 1646 ATGCCTTTCCACTGGTGACGCTCAAGTATTCTGAATTTGCCACCGGCCACCACCGGCGGT 1705 ||||| ||| ||| | || | | || ||||| || | |||| |||||||| Sbjct 8741 ATGCCGCGCCATTGGCACTTGTGCAGCACGCGAAACTTGCCCCCAGGCACCGCCGGCGGT 8800 Query 1706 GCCAGTACCACGC---ATCCGGCGCTGTCGCCACGGT-GTGACGGGTCGTAACCAATCCA 1761 || | | |||| | ||||| ||| || || | | | ||||| || || | ||| Sbjct 8801 GCGA---CGACGCTCAAGCCGGCCGAGTCACC-CGATAGCGCTGGGTCATAGCCGACCCA 8856 Query 1762 GACCGGGCGGGAGCCGAACGGATTGGCGGCAAACGGCGCATAGTCTTCCCATTCTTCCAG 1821 | |||||| ||||||| || || |||| Sbjct 8857 CAGCGGGCGATAGCCGAAAGGGCGGG--GCAA---------------------------- 8886 Query 1822 CGTGTCGACCATGCAGCGTTGCAGCTCCTCGAACGGGAATACCGACGCCTTGTCGTCAAC 1881 ||||||||||| || || | ||| ||| |||||| | |||||| | ||||| | Sbjct 8887 ----TCGACCATGCAACGCTGTAAATCCGCGAGCGGGAAAATCGACGCTGTATCGTCGAT 8942 Query 1882 AAATTCACACATGAACAGGTTTTTAAAATCGTCGGCGCTGTTTTCGCGTTTAAGCTGCTC 1941 ||| | ||||| ||||| || | || | ||||||| ||| | |||| | Sbjct 8943 AAACTGGCACATCAACAGATTGGCGTATTCCTGCGCGCTGTATTCAAGACGTAGCTCGCC 9002 Query 1942 AATGTCGAACAATGTGCAGCCACCTTTCAGGGCGTCCTCAATGGTGACAATCTGCCGCCA 2001 || ||||||| ||| || || | ||| ||||| | ||| || ||||| ||||| Sbjct 9003 GATATCGAACAGGTCGCACCCGCCGGCGACGGCATCCTCGACGGTCACGATCTGGCGCCA 9062 Query 2002 CTGGCCGTCCGCACAGAGAAGACCTCCGGCAAGGGCGTTATGACTGACGTCGATTTCCAC 2061 || | ||| | |||||| | || ||||| || || || | | ||||| | | || Sbjct 9063 TTGCCTATCCTCGCAGAGACGGCCGCCGGCGAGCGCCTTGCGCGTTACGTCCAGATGCA- 9121 Query 2062 GCGTTCGGCGGCGCTGGCGCGTCCCCGGTTAAACAGTTCACCGGACCAGAACGGATAGGC 2121 | | || | | ||||| || ||||| || | || || |||||| | |||||| Sbjct 9122 --GATGATCGACCTTTGCGCGGCCTCGGTTGAAGTGCTCGCCACTCCAGAAGGTATAGGC 9179 Query 2122 GTCGTGCGCCAGCGTGGACGGGGTGGAGAAATAGGTCGAGC-GCAGGTGACTCTGTGAGG 2180 | | || | | | ||||| |||||||||||||| | || | | || | Sbjct 9180 GGCATGTCCAATGCTCGACGGCGTGGAGAAATAGGTTTTTCTCCATTTTTTTGTGCATCG 9239 Query 2181 CCATACCTGATGCCACCTTACGCAGTACCTGAAAATTCGGGA-TCCAGAAAATCTCGTCG 2239 |||| || || || |||||| ||| | | |||| || | |||| || |||||| Sbjct 9240 CCATGCCCGACGCGACCTTATTCAGCTCGCG-AAATCCGCCAGTCCAAAAGTATTCGTCG 9298 Query 2240 ACGTACAGGTCGCCGTTATGGCTCTGTGCGGTGTTGGAGTTGGTGCCGAGAAAAATCAGT 2299 | || | | ||||| || ||||||||||||| | ||| ||||| ||||| | Sbjct 9299 AAATAGAAATTGCCGTGATAGCTCTGTGCGGTGCGCGCGTTCGTGCCTAGAAAGCGTAAC 9358 Query 2300 TTTGCGCCGTTATTGCCCAGGACAATCGGGTCACCGGTCAG---GTCAACGTCAACCAGC 2356 | |||| | ||| || || |||||||| || || || | || || | || Sbjct 9359 GT--CGCC-TCATTCGGCAAGATGATCGGGTCGCCTGTTAGCTCGACATCGGCGGCCTCG 9415 Query 2357 CGGGCAAA--GGCGATGATGTATTCACGGAACACATACGCCTGCGTTTTACTGGCCGACA 2414 || ||||| ||| | ||||| | ||| || | ||| || | || |||||||||| Sbjct 9416 CGCGCAAACTGGCAA--ATGTACTGCGTGAAAACGTGCGCGTGTGCCTTGCTGGCCGACA 9473 Query 2415 GAAAAATCTGGTTATGACCGGTTTTCAGGGCGCGCAGCAGCGCCTCGCGGGAAAAATAAA 2474 |||||||||| | | ||||| | | ||| ||| ||||| || | ||||| Sbjct 9474 GAAAAATCTGATCGCGGCCGGTCGTGATCGCGTCGTCCAGTGCCTCTCGTGCGAAATACC 9533 Query 2475 ACGTCGCGCCAATCTGGCGGGATTTCAGGATATCGCGGATGCGGTGCTCAAGCCCGGCGC 2534 |||||||||| ||||| || || || || || | ||| ||| ||| | |||| | Sbjct 9534 ACGTCGCGCCGATCTGCCGCGACTTGAGAATGTTGCGCGTGC---GCTGATGCCCTTGCC 9590 Query 2535 GATACCAGTGCAACTGATATTCGAA 2559 |||||||| | ||||| ||||| Sbjct 9591 GATACCAGACCTTTTGATAGTCGAA 9615 Score = 158 bits (174), Expect = 3e-34 Identities = 284/408 (70%), Gaps = 8/408 (2%) Strand=Plus/Plus Query 357 CCCATCAACTGAAAGGGGATGCGGTGCGCGTCCAGCAGGTCAGCGGCGC-TGGCTTTTTT 415 ||||| | ||| ||||||||| ||||| | |||| ||| || ||| || | || || Sbjct 7452 CCCATGAGCTGCGGGGGGATGCGATGCGCCGCGAGCAAGTCGTCG-CGCGTGACATTCTT 7510 Query 416 GATATTaaaaaaaTCGTCCTTCGTTGCGACTTCACTGAGCGGGATAATTTTAATGCCGTC 475 |||||| ||||| ||||| |||| | ||| || | || || | | || ||||| Sbjct 7511 GATATTGAAAAACTCGTCTTTCGCCGTGACCTCGGAAACGGGAATGAGCTGGATACCGTC 7570 Query 476 GGCTTTCCCCTGTGGGGCATAGAGAAACAGATTTTTAAAGTTGT-TGCGGCCTTTCGACT 534 || || | || || || | ||||| ||| || ||| || |||| | | Sbjct 7571 TTTCTTGCCGTTCGGCGCGTACATGAACAGGTTTCGGAAATTGCCTGGCCCCTTGCTGTT 7630 Query 535 TCACCATGTTTTCGCGAAGCATTTCGATATCG--TTGCGATCCTGCACGGCATCGGTAAC 592 | | | | | |||| | | |||| |||| |||||| |||| | ||||| || | Sbjct 7631 TTTCAACGCCT-CGCGCATGTTGTCGACATCGGTTTGCGA--CTGCGCCGCATCCGTCAT 7687 Query 593 GTACATGATGTATCCGGCATGTGCGCCGTTTTCGTAATACTTGCGGCGGAACAGCGTGGC 652 ||||| ||| | || || || | || || ||||||||| ||||| || ||||| || Sbjct 7688 GTACAGGATAAAGCCCGCGTGCGAACCATTCTCGTAATACCGCCGGCGAAATAGCGTCGC 7747 Query 653 CGACTCATTCAGCCAGGCAGAGTTAAGGGCGCTGAGATATTCCGGCAGGCCGTACAGCTC 712 |||||| |||| ||| || | || ||||||| ||||||||| |||| ||| |||| ||| Sbjct 7748 CGACTCGTTCAACCATGCCGCGTGCAGGGCGCCGAGATATTCGGGCAAGCCATACACCTC 7807 Query 713 CTGATTAATATCCGGCTCCAGCAGGTGAAACACGGAGCCGGGCGCGAA 760 ||||||||| ||||| |||| || |||| ||||| |||| |||||| Sbjct 7808 CTGATTAATGTCCGGTTCCATCAAGTGATGCACGGTCCCGGCCGCGAA 7855 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 104380749931524