Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physarum_20polycephalum_20[genbank_20GCA_5F000413255.3_202014-06-30] 69,687 sequences; 205,175,886 total letters Query= NC_005284.1 Length=54865 Score E Sequences producing significant alignments: (Bits) Value seq9539 221 4e-53 seq3196 134 5e-27 seq2291 122 3e-23 seq2065 89.7 2e-13 >seq9539 Length=1484 Score = 221 bits (244), Expect = 4e-53 Identities = 281/384 (73%), Gaps = 7/384 (2%) Strand=Plus/Plus Query 22179 ATGGCAAATCCCATTATTCCCTGGATCGGCGGCAAGCGTCGACTCGCTGACCACATCATC 22238 ||||||| || | ||||| |||| || ||||| || || || || ||| | || Sbjct 754 ATGGCAATGCCGGTCATTCCGCGGATAGGTGGCAA-CGGCGGCTTGCGGACGTGCTGATT 812 Query 22239 CCGCGCTTTCCGAAGCACGACTGTTACGTCGAGGTGTTCGCGGG-CGGGGCGGCGCTGTA 22297 || || ||||| || ||||| ||||||||||| ||||| || |||||| | || Sbjct 813 CCACGTTTTCCACGCCATACCTGTTCTGTCGAGGTGTTTGCGGGGCGCGGCGGCACGGTT 872 Query 22298 CTTCATGCGACCGCCAGCCAGGGTCGAGGTGATCAACGATATCAACGGCGAGCTGGTGAA 22357 |||||||| |||| ||| ||| |||||| | || || || | || ||||||||||| Sbjct 873 CTTCATGCTGTCGCCTGCCGAGGTGGAGGTGCTGAATGACATGAGCGATGAGCTGGTGAA 932 Query 22358 CCTGTATCGCGTCGTTCAGCACCATCTCGAAGAGTTCGTGCGTCAGTTCAAATGGGCGCT 22417 ||||||||||| || |||||||| ||||| | ||||||| | || || ||||||||| | Sbjct 933 TCTGTATCGCGTGGTGCAGCACCACCTCGAGGTGTTCGTGAGGCAATTTAAATGGGCGTT 992 Query 22418 GACGAGCCGGCAGGTGTTCGAGTGGCTGAAGCATACGGTCCCGGAAACCCTCACCGACAT 22477 ||||||||||| || |||||| || | ||| ||| || || ||||| ||||| Sbjct 993 GACGAGCCGGC-----TTAAGATGGCTGCAGGACACGCGCCCCGAGACGCTCACGGACAT 1047 Query 22478 CCAGCGTGCGGCACGCTTCTACTACCTGCAAAAAAGTTGCTTTGGCGGGAAGCTTGAAGG 22537 ||||||||| || || |||||||| |||||| | | ||||||| || |||| || Sbjct 1048 CCAGCGTGCTGCGCGGTTCTACTATCTGCAACAGAACGGCTTTGGTGGTCGTGTTGAGGG 1107 Query 22538 GCAGACGTTCGGAACGGCGACGAC 22561 | ||||| || ||||| ||||| Sbjct 1108 GAGAACGTTTGGCACGGCAACGAC 1131 >seq3196 Length=8014 Score = 134 bits (148), Expect = 5e-27 Identities = 357/534 (67%), Gaps = 41/534 (8%) Strand=Plus/Plus Query 48803 ACCCGCGCGGCGTGCGCCGCGAGTTGCGTTGCATGGCGAACTGC-GATCAATCGAGCTGC 48861 ||| ||||||||||||||||||||||||||||||| ||||| | || || |||| |||| Sbjct 4156 ACCTGCGCGGCGTGCGCCGCGAGTTGCGTTGCATGCGGAACTTCTGAACA-TCGAACTGC 4214 Query 48862 CCGACTGGTTGCCCGTCGACGCGTGGCTCGACTGGTGCGAGCACCGCGAGGCGAAAGCGG 48921 | | | | || | | || ||| || |||||||| |||||||| || ||| Sbjct 4215 CTGCAAGCATCCCGTTTGCCGTTTGGGACGCATGGTGCGAACACCGCGAAGCCAAAA--- 4271 Query 48922 CGGAGAAGTCGGCGCCGTGGACACGCCCGGCGGCGAAGGTGTCGCTGCGCCGCCTCGAGA 48981 | ||| || | |||||||| || ||||| || |||||| | | ||| Sbjct 4272 --GCAAAGACG-CTCCGTGGACGCGACCGGCTGCCCGCGTGTCGAT---------CAAGA 4319 Query 48982 AGCTGAGAGAGCTTGGGCATGCC---------CCGGCGGACTGCATCGACGAAGCGGTGC 49032 || || | ||| | |||| || | || | |||||||||| |||| Sbjct 4320 AGTTGGAAATGCTCGCTGCTGCCGGCCAAAGCCCTGAGGTCACGGTCGACGAAGCAGTGC 4379 Query 49033 TGCGCGGCTGGACGGGGCTGTTCCCGGTGAAGTCAGACAGCACGGCGACGAGCGG-ACAG 49091 ||||||||||||| || ||||| ||||||||| | || | | |||||| ||| || | Sbjct 4380 TGCGCGGCTGGACCGGTCTGTTTCCGGTGAAGGCTGA---CGCCGCGACGGCCGGCACGG 4436 Query 49092 -----GACGTTCCTGCCGACTGGCACAAGAGCGCGCAGGGTGTCACTGAC-CGCGGTAAG 49145 | ||| | ||||||||| |||| || || | | ||| | || || || Sbjct 4437 CCGCCGGTGTTGCCGCCGACTGGTGGAAGACCG-AAAGCGGCTATCTGGCTCGTGGCCAG 4495 Query 49146 CAACTCGGCATCGAGCAGCGCG-AGGGCGAAGTGTTCATGCGTTTTAAGGCGCGCGTCGT 49204 || ||||||||||| | ||||| | | | | ||| || || |||||||||||| Sbjct 4496 CAGCTCGGCATCGA-CCGCGCGAAATTCCAGTTCTTCGAGCAGTTCAAGGCGCGCGTCTG 4554 Query 49205 CAAGGCGGACGGGCCC-GGCGAGGCGATGGAGGAAATGCTGCGCGAGGCTGCCCGCTTCG 49263 |||||| | ||||||| ||||| |||||| || | |||||| || | ||| Sbjct 4555 CAAGGCAG-CGGGCCCGGGCGAATGGATGGAAGAGCTTCTGCGCACGGTCGGTCGCGAAA 4613 Query 49264 GGAATGAGACCTACGAGCAGTTGTACCGGTACTTCAACGACATCCCGCGCGATC 49317 | | ||| |||||| | ||||| || |||||||| |||||||||||| Sbjct 4614 GCGAAGAGCGCTACGAAGCGCTGTACGCATATTTCAACGAAGTCCCGCGCGATC 4667 >seq2291 Length=11769 Score = 122 bits (134), Expect = 3e-23 Identities = 518/798 (65%), Gaps = 29/798 (4%) Strand=Plus/Minus Query 47107 ATGGCGAAGAACTCAATCGACGTCTACGGGGCATCGGGCAAGGGCAACGTCCTTTCGATG 47166 ||||| || ||| ||||||| ||||| ||||| ||||| |||||||||| | | Sbjct 3483 ATGGCAAAAAACAGCATCGACGCGTACGGCGCATCCGGCAAAAGCAACGTCCTCTATTTC 3424 Query 47167 GACCCCGACAAGCTGACGCTCGTCACGGACCCGAAGCACCCGCTGTACGACCGGCGCGTA 47226 || || || | |||||||||| ||| | | ||| ||||| |||||| ||||| Sbjct 3423 GATCCTGAGGTGTTGACGCTCGTGGAGGATCAGGCGCATCCGCTTTACGACTCTCGCGTG 3364 Query 47227 CATCAGGCGCCGAACCCGAAGACGGTTCGAAACTACCGCGTGC-AGGGCGTGCTCGAGCC 47285 |||| | ||| || ||| | ||| || ||| | | || | | || ||||| || | Sbjct 3363 CATCTGCCGCTCGACGAGAACATGGTGCGCAAC-ATCATGTACCAAGGTGTGCTGCAGGC 3305 Query 47286 GGTGCTCTTCTACAAAGACCCGGAGACGGGCGAGAACCTCGTGATCGAC---GGCCGTCG 47342 | | || |||| | || ||||| ||| ||| ||| ||| | ||||| | Sbjct 3304 GATCGAGGTCAACAAGAATCCCGAGACAGGC---AACGTCGAAGTCGTCATGGGCCGGCA 3248 Query 47343 CCGCGTGATCAACGCGCGCGAGCTGAACCGTCAACTGATCGATGCGGGCGAAGAGCCGAT 47402 || || | ||| || ||| ||||| | | |||| |||||| || |||| Sbjct 3247 GCGTGTCAAAAACTGCCGGGAGGCTAACCGCCGTTTACGCGATCGGGGCGAGGAACCGAA 3188 Query 47403 -CACGATTCCAGCGATC---CCGAAGC--GCGTCATGCGCGACAGCGACAAGTCGTTTGT 47456 | || | || |||||| | |||| ||| | ||| ||| ||| | | ||| Sbjct 3187 GCTCG-TGCCGGCGATCGTGCGGAAGGTGGCGGC--GCGTGACCGCG-CGCTTGTGCTGT 3132 Query 47457 CGGAATG-ATGGTCAGCACGAACGAGATCCGCGAAGAGGACTCGCCGATCAACCGGGCCG 47515 ||| | || ||| |||| || ||| || |||| ||||| | || |||| Sbjct 3131 CGGCCGCCACGGCAAGCGAAAACGCCATTCGCCAACAGGAAAGCCCGATAACGCGCGCCG 3072 Query 47516 AGAAGATGGCTCGCATGCTCGACG-TCGGCCACACCGAGGATGCTATCGCCGTCGTGTTC 47574 | || ||||| || || | || |||| | |||||| | ||||| || ||||| Sbjct 3071 AAAAAATGGCGCGGCAACT-GTCGCTCGGTCGATCCGAGGCGGATATCGGAATCTTGTTC 3013 Query 47575 GGCGTCGAGGTGCCGACCGTGCGCTC--CGCATTGAAGCTGCTCGACTGCTGCATGGCGG 47632 || |||| ||| |||||||||| | ||| | ||| |||||||| |||||| || | Sbjct 3012 GGTGTCGGTCTGCAGACCGTGCGCGCGTCGC-TCGAA-CTGCTCGAATGCTGCGCTGCCG 2955 Query 47633 TGCGTGACGCTGTTGAGGCGGAACAGATCACTGTGTCGCACGCGCTGAAGCTTGCGAAGC 47692 | | || ||||| || |||| || | | || | || ||| | |||| ||||| Sbjct 2954 TTCAGGATGCTGTCGAAGCGGGGAAGGTGAACGTTACCCATGCGAAGCAGCTCGCGAAAT 2895 Query 47693 TGTCGCCCGACGAGCAACGCGCGAAGGTTCAGGCGTTGATCGATGCCGCTGACGGCAAGG 47752 || ||||||| || || |||||||||||| | ||||||| |||| |||||| Sbjct 2894 TGACGCCCGATGACCAGCGCGCGAAGGTTGCCGAATTGATCGCGGCCGGCGACGGCGTAA 2835 Query 47753 AAGGGCACGCGCGCTCGCGTGCGCAGAAGGCCGTGCTCGGCGGTACGGC--GGCGCGCGT 47810 | ||||| | |||||||| ||| ||||||| | || | ||||| | ||||| | Sbjct 2834 ATGGGCATGAACGCTCGCGCAAACAGCGGGCCGTGATGGGTG--ACGGCAAGCCGCGCAT 2777 Query 47811 ACGTCCGCGTAAGCAGATCGAGGCGGCGCTCGCGGAGGCGACGGGCGAGCGCTTGGCGGC 47870 |||| | |||||||| || | | | | || | ||||||||| | || Sbjct 2776 GAAGACGCGCGCGAAGATCGAGAAGGAGTTGGAGACCGCCAAGGGCGAGCGAGCAGACGC 2717 Query 47871 GCTGCGATGGGTGCTCGG 47888 ||||| ||||| ||||| Sbjct 2716 CCTGCGGTGGGTCCTCGG 2699 >seq2065 Length=13171 Score = 89.7 bits (98), Expect = 2e-13 Identities = 49/49 (100%), Gaps = 0/49 (0%) Strand=Plus/Plus Query 28275 TGGTCGGAGCGATAGGATTCGAACCTACGACCCTCTGATCCCAAATCAG 28323 ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 12346 TGGTCGGAGCGATAGGATTCGAACCTACGACCCTCTGATCCCAAATCAG 12394 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 175301212292338