Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Physarum_20polycephalum_20[genbank_20GCA_5F000413255.3_202014-06-30]
69,687 sequences; 205,175,886 total letters
Query= NC_005309.1
Length=359853
Score E
Sequences producing significant alignments: (Bits) Value
seq2782 127 5e-24
seq146 118 2e-21
seq30454 105 2e-17
>seq2782
Length=10868
Score = 127 bits (140), Expect = 5e-24
Identities = 166/227 (73%), Gaps = 2/227 (1%)
Strand=Plus/Plus
Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389
||||| || | || | ||| || | || | || || ||||||||||| || || |||
Sbjct 9141 ATTCCACCACGAAGGCGAAGCACCAAGTGAAGGGTGGACTCTTTCTGAATGTTGTAATCA 9200
Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449
|| || || | ||||| |||||||| ||||||||||| || || | ||||| |||||
Sbjct 9201 GAAAGGGTACGTCCGTCCTCTAGTTGCTTTCCAGCAAAGATGAGGCGTTGTTGGTCAGGG 9260
Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGT-TC 104508
|| |||||||| || ||||| ||||| | ||||| || | |||||| || | ||
Sbjct 9261 GGGATTCCTTCCTTGTCCTGGATCTTAGTCTTTACGGACTCGATGGTATC-AGAGCTCTC 9319
Query 104509 TACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCT 104555
||||| | ||||| ||||||||||| || || || || || ||||
Sbjct 9320 GACCTCCAAGGTAATTGTCTTACCAGTGAGGGTCTTGACGAAAATCT 9366
Score = 91.5 bits (100), Expect = 3e-13
Identities = 158/227 (70%), Gaps = 2/227 (1%)
Strand=Plus/Plus
Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389
||||| || | || | ||| || | || | || || || ||||| || |||||||||
Sbjct 9444 ATTCCACCGCGAAGGCGAAGCACCAAGTGAAGGGTGGACTCCTTCTGGATGTTATAGTCA 9503
Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449
|| || || | || || || ||||| |||||||| || || | | ||||| |||||
Sbjct 9504 GAGAGGGTACGTCCATCCTCGAGTTGCTTTCCAGCGAAGATCAAACGTTGTTGGTCAGGG 9563
Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGT-TC 104508
|| || ||||| || ||||| ||||||| || || || | ||| || | || | ||
Sbjct 9564 GGGATGCCTTCCTTGTCCTGGATCTTTGTCTTGACGGACTCAATGGTGTC-CGAGCTCTC 9622
Query 104509 TACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCT 104555
||||| | || || ||||| || || || || || || || ||||
Sbjct 9623 CACCTCCAAGGTGATCGTCTTGCCCGTGAGGGTCTTGACGAAAATCT 9669
>seq146
Length=178297
Score = 118 bits (130), Expect = 2e-21
Identities = 146/197 (74%), Gaps = 2/197 (1%)
Strand=Plus/Plus
Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422
|| || || ||||||||||| ||||| || || | ||||| || ||||| ||||||
Sbjct 157712 GTGGACTCCTTCTGAATATTGTAGTCGCTGAGGGTGCGTCCGTCCTCGAGTTGCTTTCCA 157771
Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482
|| || || || | |||||| ||||| || ||||| || || || |||||||||| ||
Sbjct 157772 GCGAAGATGAGGCGCTGTTGGTCAGGGGGAATTCCCTCCTTGTCTTGAATCTTTGTCTTG 157831
Query 104483 ACATTTTCTACGGTATCGCTAGGT-TCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGT 104541
|| | || | ||| || || | || ||||| | || || ||||| ||||| |||||
Sbjct 157832 ACGCTCTCGATGGTGTC-AGAGCTCTCGACCTCCAACGTGATGGTCTTTCCAGTGAGTGT 157890
Query 104542 TTTTACAAATATCTGCA 104558
||| ||||| |||||||
Sbjct 157891 TTTCACAAAAATCTGCA 157907
Score = 96.9 bits (106), Expect = 8e-15
Identities = 140/195 (72%), Gaps = 2/195 (1%)
Strand=Plus/Plus
Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422
|| || || || ||||| || ||||| || || || | || || || ||||| |||||
Sbjct 157392 GTGGACTCCTTTTGAATGTTGTAGTCGGAGAGGGTGCGTCCATCCTCGAGTTGCTTTCCG 157451
Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482
|| || || || | ||||| ||||| || ||||| || || || |||||||| | |||
Sbjct 157452 GCGAAGATGAGGCGTTGTTGGTCAGGGGGAATTCCCTCCTTGTCTTGAATCTTAGTCTTT 157511
Query 104483 ACATTTTCTACGGTATCGCTAGGT-TCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGT 104541
|| | || | ||| || || | || || || || ||||||||||| ||||| || ||
Sbjct 157512 ACGCTCTCAATGGTGTCAG-AGCTCTCGACTTCGAGAGTAATAGTCTTGCCAGTGAGGGT 157570
Query 104542 TTTTACAAATATCTG 104556
|| || || |||||
Sbjct 157571 CTTAACGAAGATCTG 157585
Score = 86.0 bits (94), Expect = 1e-11
Identities = 137/194 (71%), Gaps = 2/194 (1%)
Strand=Plus/Plus
Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422
|| || || || || || || ||||| || || || | || || || ||||| || |||
Sbjct 157069 GTGGACTCCTTTTGGATGTTGTAGTCGGAGAGGGTGCGTCCATCCTCGAGTTGCTTGCCA 157128
Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482
|||||||| | | ||||| || || || |||||||| || ||||| ||||| | ||
Sbjct 157129 GCAAAAATCAAACGTTGTTGGTCGGGGGGGATTCCTTCCTTGTCCTGGATCTTGGTCTTG 157188
Query 104483 ACATTTTCTACGGTATCGCTAGGT-TCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGT 104541
|| || | ||| ||| || | || ||||| || || || ||||| ||||| || ||
Sbjct 157189 ACGGACTCGATGGTGTCG-GAGCTCTCGACCTCAAGAGTGATGGTCTTTCCAGTGAGGGT 157247
Query 104542 TTTTACAAATATCT 104555
|| || || ||||
Sbjct 157248 CTTGACGAAGATCT 157261
>seq30454
Length=461
Score = 105 bits (116), Expect = 2e-17
Identities = 143/197 (73%), Gaps = 2/197 (1%)
Strand=Plus/Plus
Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422
|| || || || |||||||| ||||| || || || | || || || || || || |||
Sbjct 44 GTGGACTCCTTTTGAATATTGTAGTCGGAGAGGGTGCGTCCATCCTCGAGCTGCTTGCCA 103
Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482
||||| || | | ||||| ||||| || |||||||| || ||||||||||| | |||
Sbjct 104 GCAAAGATCAAACGTTGTTGGTCAGGGGGAATTCCTTCCTTGTCCTGAATCTTGGTCTTT 163
Query 104483 ACATTTTCTACGGTATCGCTAGGT-TCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGT 104541
|| || | || || || | || ||||| || ||||||||||||||||| || ||
Sbjct 164 ACTGACTCGATAGTGTC-AGAGCTCTCAACCTCAAGGGTAATAGTCTTACCAGTGAGGGT 222
Query 104542 TTTTACAAATATCTGCA 104558
|| || || |||| ||
Sbjct 223 CTTGACGAAGATCTACA 239
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1150370357027396
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |