Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physarum_20polycephalum_20[genbank_20GCA_5F000413255.3_202014-06-30] 69,687 sequences; 205,175,886 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq2782 127 5e-24 seq146 118 2e-21 seq30454 105 2e-17 >seq2782 Length=10868 Score = 127 bits (140), Expect = 5e-24 Identities = 166/227 (73%), Gaps = 2/227 (1%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 ||||| || | || | ||| || | || | || || ||||||||||| || || ||| Sbjct 9141 ATTCCACCACGAAGGCGAAGCACCAAGTGAAGGGTGGACTCTTTCTGAATGTTGTAATCA 9200 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || || || | ||||| |||||||| ||||||||||| || || | ||||| ||||| Sbjct 9201 GAAAGGGTACGTCCGTCCTCTAGTTGCTTTCCAGCAAAGATGAGGCGTTGTTGGTCAGGG 9260 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGT-TC 104508 || |||||||| || ||||| ||||| | ||||| || | |||||| || | || Sbjct 9261 GGGATTCCTTCCTTGTCCTGGATCTTAGTCTTTACGGACTCGATGGTATC-AGAGCTCTC 9319 Query 104509 TACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCT 104555 ||||| | ||||| ||||||||||| || || || || || |||| Sbjct 9320 GACCTCCAAGGTAATTGTCTTACCAGTGAGGGTCTTGACGAAAATCT 9366 Score = 91.5 bits (100), Expect = 3e-13 Identities = 158/227 (70%), Gaps = 2/227 (1%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 ||||| || | || | ||| || | || | || || || ||||| || ||||||||| Sbjct 9444 ATTCCACCGCGAAGGCGAAGCACCAAGTGAAGGGTGGACTCCTTCTGGATGTTATAGTCA 9503 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || || || | || || || ||||| |||||||| || || | | ||||| ||||| Sbjct 9504 GAGAGGGTACGTCCATCCTCGAGTTGCTTTCCAGCGAAGATCAAACGTTGTTGGTCAGGG 9563 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGT-TC 104508 || || ||||| || ||||| ||||||| || || || | ||| || | || | || Sbjct 9564 GGGATGCCTTCCTTGTCCTGGATCTTTGTCTTGACGGACTCAATGGTGTC-CGAGCTCTC 9622 Query 104509 TACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCT 104555 ||||| | || || ||||| || || || || || || || |||| Sbjct 9623 CACCTCCAAGGTGATCGTCTTGCCCGTGAGGGTCTTGACGAAAATCT 9669 >seq146 Length=178297 Score = 118 bits (130), Expect = 2e-21 Identities = 146/197 (74%), Gaps = 2/197 (1%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || ||||||||||| ||||| || || | ||||| || ||||| |||||| Sbjct 157712 GTGGACTCCTTCTGAATATTGTAGTCGCTGAGGGTGCGTCCGTCCTCGAGTTGCTTTCCA 157771 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || || || | |||||| ||||| || ||||| || || || |||||||||| || Sbjct 157772 GCGAAGATGAGGCGCTGTTGGTCAGGGGGAATTCCCTCCTTGTCTTGAATCTTTGTCTTG 157831 Query 104483 ACATTTTCTACGGTATCGCTAGGT-TCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGT 104541 || | || | ||| || || | || ||||| | || || ||||| ||||| ||||| Sbjct 157832 ACGCTCTCGATGGTGTC-AGAGCTCTCGACCTCCAACGTGATGGTCTTTCCAGTGAGTGT 157890 Query 104542 TTTTACAAATATCTGCA 104558 ||| ||||| ||||||| Sbjct 157891 TTTCACAAAAATCTGCA 157907 Score = 96.9 bits (106), Expect = 8e-15 Identities = 140/195 (72%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || || ||||| || ||||| || || || | || || || ||||| ||||| Sbjct 157392 GTGGACTCCTTTTGAATGTTGTAGTCGGAGAGGGTGCGTCCATCCTCGAGTTGCTTTCCG 157451 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || || || | ||||| ||||| || ||||| || || || |||||||| | ||| Sbjct 157452 GCGAAGATGAGGCGTTGTTGGTCAGGGGGAATTCCCTCCTTGTCTTGAATCTTAGTCTTT 157511 Query 104483 ACATTTTCTACGGTATCGCTAGGT-TCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGT 104541 || | || | ||| || || | || || || || ||||||||||| ||||| || || Sbjct 157512 ACGCTCTCAATGGTGTCAG-AGCTCTCGACTTCGAGAGTAATAGTCTTGCCAGTGAGGGT 157570 Query 104542 TTTTACAAATATCTG 104556 || || || ||||| Sbjct 157571 CTTAACGAAGATCTG 157585 Score = 86.0 bits (94), Expect = 1e-11 Identities = 137/194 (71%), Gaps = 2/194 (1%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || || || || || ||||| || || || | || || || ||||| || ||| Sbjct 157069 GTGGACTCCTTTTGGATGTTGTAGTCGGAGAGGGTGCGTCCATCCTCGAGTTGCTTGCCA 157128 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 |||||||| | | ||||| || || || |||||||| || ||||| ||||| | || Sbjct 157129 GCAAAAATCAAACGTTGTTGGTCGGGGGGGATTCCTTCCTTGTCCTGGATCTTGGTCTTG 157188 Query 104483 ACATTTTCTACGGTATCGCTAGGT-TCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGT 104541 || || | ||| ||| || | || ||||| || || || ||||| ||||| || || Sbjct 157189 ACGGACTCGATGGTGTCG-GAGCTCTCGACCTCAAGAGTGATGGTCTTTCCAGTGAGGGT 157247 Query 104542 TTTTACAAATATCT 104555 || || || |||| Sbjct 157248 CTTGACGAAGATCT 157261 >seq30454 Length=461 Score = 105 bits (116), Expect = 2e-17 Identities = 143/197 (73%), Gaps = 2/197 (1%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || || |||||||| ||||| || || || | || || || || || || ||| Sbjct 44 GTGGACTCCTTTTGAATATTGTAGTCGGAGAGGGTGCGTCCATCCTCGAGCTGCTTGCCA 103 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || | | ||||| ||||| || |||||||| || ||||||||||| | ||| Sbjct 104 GCAAAGATCAAACGTTGTTGGTCAGGGGGAATTCCTTCCTTGTCCTGAATCTTGGTCTTT 163 Query 104483 ACATTTTCTACGGTATCGCTAGGT-TCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGT 104541 || || | || || || | || ||||| || ||||||||||||||||| || || Sbjct 164 ACTGACTCGATAGTGTC-AGAGCTCTCAACCTCAAGGGTAATAGTCTTACCAGTGAGGGT 222 Query 104542 TTTTACAAATATCTGCA 104558 || || || |||| || Sbjct 223 CTTGACGAAGATCTACA 239 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1150370357027396