Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physarum_20polycephalum_20[genbank_20GCA_5F000413255.3_202014-06-30] 69,687 sequences; 205,175,886 total letters Query= NC_005340.1 Length=30636 Score E Sequences producing significant alignments: (Bits) Value seq2320 280 3e-71 >seq2320 Length=11620 Score = 280 bits (310), Expect = 3e-71 Identities = 815/1246 (65%), Gaps = 58/1246 (5%) Strand=Plus/Plus Query 2015 GGTTCGTTTAACAGGGCGTGCATGGTCGCCCATGCGATATCGGCGTGACTGGCTTCCTCG 2074 |||||||| || ||||||| | |||||| || | || ||||| | | || |||| Sbjct 8372 GGTTCGTTGCCGAGCGCGTGCAGGCACGCCCAGGCAAGGTCCGCGTGTCCTGTTTGCTCG 8431 Query 2075 GTGCGGCTGGCCTCATAGGTAGCGCTGCGCCCGCTGCTGGTCATGGTTTTGCGGATGGAC 2134 | ||||| || ||||| || | | ||||| |||||||||||||| || | | Sbjct 8432 TTACGGCTCGCTTCATAAGTGACTTTCTTTCCGCTCGCCGTCATGGTTTTGCGAATCGCC 8491 Query 2135 ATAAACGACTGCGTGACGTCGGTTGCCCCGGCGTCGTATTCCAGACAGCCGCGGCGAATG 2194 || ||||| |||| | ||| || ||||| ||| |||| || | ||| | || Sbjct 8492 ATGAACGATTGCGCTAAGTCTGTCCATCCGGCATCGAATTCGAGCCGGCCCTTACCGATC 8551 Query 2195 GT-GTCTTTCGCCTTGAGCACCATTGCGGTT-TTCATTTCTGGCGTGTAACGGATACCGC 2252 | | | | |||||||||| |||| || | |||||||| || || ||| Sbjct 8552 ACCGACAAGC-CTTTGAGCACCAG-GCGGCCCTTAACTTCTGGCGAATAGTTGAG--CGC 8607 Query 2253 GAGCCGC---CGGGTAGAATGAACGCACCAACTGGAATACACCGAGACCGAGGCCTGTTG 2309 || |||| ||| ||||| | || | ||| | || || | |||| |||||| | Sbjct 8608 GA-CCGCGTTCGGATAGAACTGCCTGACGAGCTGATAGACGCCCTGGCCGATGCCTGTCG 8666 Query 2310 CGTCAATGCCGATGTATTCGACGTTGTATTTCTCAGTGAGCCTGCGGATGCCTTCTGCCT 2369 || || | || || |||||||||||| || |||| | ||| || | || |||| Sbjct 8667 TATCGATCGCCATATAGGCGACGTTGTATTGCTGCGTGATCGCGCGTATCGCCTCGGCCT 8726 Query 2370 GCGCGGCAAAGTCCATGCCTTTCCACTGGTGACGCTCCAGCATGCGAAACTTGCCACCCG 2429 | || | || |||||||| ||| ||| | ||||| |||||||||||| || | Sbjct 8727 GTGCCTCGAAATCCATGCCGCGCCATTGGCACTTGTGCAGCACGCGAAACTTGCCCCCAG 8786 Query 2430 AAACCACCGGCGGCGCGAGTACGACACATCCGGCACTGTCGCCGGTGTGGGACGGGTCGT 2489 ||| ||||||| |||| ||| | ||||| ||| || | | | ||||| | Sbjct 8787 GCACCGCCGGCGGTGCGACGACGCTCAAGCCGGCCGAGTCACCCGATAGCGCTGGGTCAT 8846 Query 2490 AGCCAATCCAGACCGGGCGTGAGCCGAATGGATGGTCGGCGAACGGGGCGAAGTCCTCCC 2549 |||| | ||| | |||||| ||||||| || |||||| | Sbjct 8847 AGCCGACCCACAGCGGGCGATAGCCGAAAGGG-----------CGGGGCAA--------- 8886 Query 2550 ATGTTTCCATCACGTCGACCATGCAGCGCTGCAGCTCCTCGAACGGGAATACAGATGCCT 2609 ||||||||||| ||||| | ||| ||| |||||| | || || Sbjct 8887 --------------TCGACCATGCAACGCTGTAAATCCGCGAGCGGGAAAATCGACGCTG 8932 Query 2610 TATCGTCGACAAACTCGCACATAAACAGGTTTTTAAAGTCCTCATCACTGTTTTCGCGTC 2669 ||||||||| ||||| |||||| ||||| || | |||| | |||| ||| | | Sbjct 8933 TATCGTCGATAAACTGGCACATCAACAGATTGGCGTATTCCTGCGCGCTGTATTCAAGAC 8992 Query 2670 TGAGCTGGTCGAGGTCGAACAGGGTGCAGCCACCGGCAAGGGCGTCCTCAATAGTGACAA 2729 |||| | ||| ||||||||| ||| || ||||| | ||| ||||| | || || | Sbjct 8993 GTAGCTCGCCGATATCGAACAGGTCGCACCCGCCGGCGACGGCATCCTCGACGGTCACGA 9052 Query 2730 TCTGCCGCCACTGTCCGTCAGCGCAAAGAAGCCCACCGGCGAGCGCGCTGTGACTGATGT 2789 |||| ||||| || | || |||| ||| | || ||||||||||| || | | | || Sbjct 9053 TCTGGCGCCATTGCCTATCCTCGCAGAGACGGCCGCCGGCGAGCGCCTTGCGCGTTACGT 9112 Query 2790 CGATTTCGATGC-GGTCAGCAGCACTGGCGCGCCCCTTGTTGAACAGCTCGCCAGACCAG 2848 | | ||||| | | | | | | ||||| || |||||| |||||||| |||| Sbjct 9113 CCA----GATGCAGATGATCGACCTTTGCGCGGCCTCGGTTGAAGTGCTCGCCACTCCAG 9168 Query 2849 AAGGGATAAGCGCCGTGCGCCAGCGTGGAAGGTGTCGAAAAGTAAGTTGAGC-GCAGATG 2907 |||| ||| ||| | || | | | || || || || || || ||| | || | Sbjct 9169 AAGGTATAGGCGGCATGTCCAATGCTCGACGGCGTGGAGAAATAGGTTTTTCTCCATTTT 9228 Query 2908 CTTTTGCGAGGCCATGCCCGAGGCGACTTTGCGCAGCTTCTGAAAATTCGGGA-TCCAGA 2966 || ||| ||||||||||| ||||| || |||| || |||| || | |||| | Sbjct 9229 TTTGTGCATCGCCATGCCCGACGCGACCTTATTCAGC-TCGCGAAATCCGCCAGTCCAAA 9287 Query 2967 ATATTTCATCGACATACAGGTCGCCGTTATGGCTCTGCGCGGTGTTGGAATTGGTGCCGA 3026 | ||| |||| ||| | | ||||| || |||||| |||||| | || ||||| | Sbjct 9288 AGTATTCGTCGAAATAGAAATTGCCGTGATAGCTCTGTGCGGTGCGCGCGTTCGTGCCTA 9347 Query 3027 GAAAAATCAGCTTTGCGCCGTTGTTGCCGATGACAATCGGGTCGCCAGTCAGGTCGA--- 3083 |||| | | | |||| | || | || ||||||||||| || || |||| Sbjct 9348 GAAAGCGTAACGT--CGCC-TCATTCGGCAAGATGATCGGGTCGCCTGTTAGCTCGACAT 9404 Query 3084 CGTCAACCAGTCGCGCAAACTGGATGATGTATTCCCGGAACACGTAAGCCTGCGTTTTAC 3143 || | || |||||||||||| ||||| | | ||| |||| || || | || | Sbjct 9405 CGGCGGCCTCGCGCGCAAACTGGCAAATGTACTGCGTGAAAACGTGCGCGTGTGCCTTGC 9464 Query 3144 TGGCCGACAGAAAAATCTGGTTATGGCCGGTCTTGAGCGCGCGCAGCAGTGCCTCGCGGG 3203 ||||||||||||||||||| | |||||||| ||| |||| ||||||||| || | Sbjct 9465 TGGCCGACAGAAAAATCTGATCGCGGCCGGTCGTGATCGCGTCGTCCAGTGCCTCTCGTG 9524 Query 3204 AAAAGTAGAACGTCGCGCCAATCTGGCGGGATTTGAGAATATCGCG 3249 || || |||||||||| ||||| || || |||||||| | ||| Sbjct 9525 CGAAATACCACGTCGCGCCGATCTGCCGCGACTTGAGAATGTTGCG 9570 Score = 161 bits (178), Expect = 2e-35 Identities = 285/413 (69%), Gaps = 2/413 (0%) Strand=Plus/Plus Query 364 CCCATAAGCTGGAACGGCACGCGGTGAGCGTCCATCAGGTCGGCGGCACTGGCTTTCTTG 423 ||||| ||||| || | ||| || || | | || |||| || || | |||||| Sbjct 7452 CCCATGAGCTGCGGGGGGATGCGATGCGCCGCGAGCAAGTCGTCGCGCGTGACATTCTTG 7511 Query 424 ATATTGAAAAAGTCATCCTTTGTGGCGACCTCGCTCAGTGGCACGATTTTTATGCCGTCC 483 ||||||||||| || || || | | ||||||| | || | || | || ||||| Sbjct 7512 ATATTGAAAAACTCGTCTTTCGCCGTGACCTCGGAAACGGGAATGAGCTGGATACCGTCT 7571 Query 484 GGTTTCCCGTTCGGTGAGTAGAAAAACAGGTTTTTAAAGTTGCCGAGCCCTTTAGAATTA 543 || |||||||| | ||| | ||||||||| || ||||| |||| || || Sbjct 7572 TTCTTGCCGTTCGGCGCGTACATGAACAGGTTTCGGAAATTGCCTGGCCCCTTGCTGTTT 7631 Query 544 CGCATTGCATCGCGCAGCGATTCGACGTCAGTC-GCGCTTTGCGCCGGGTCAGTCACATA 602 || || ||||||| ||||| || || ||| | |||||| || |||| || Sbjct 7632 TTCAACGCCTCGCGCATGTTGTCGACATCGGTTTGCGACT-GCGCCGCATCCGTCATGTA 7690 Query 603 CATGATGTAACCTGCGTGCGCGCCGTTCTGGTAATACTTGCGGCGGAACAGCGTCGCGGA 662 || ||| | || ||||||| || |||| ||||||| ||||| || |||||||| || Sbjct 7691 CAGGATAAAGCCCGCGTGCGAACCATTCTCGTAATACCGCCGGCGAAATAGCGTCGCCGA 7750 Query 663 TTCATTCAGCCACGCAGAATTAAGCGCGCTGAGATATTCAGGCAGGCCGTAAATCTCCTG 722 || |||| ||| || | | || |||| ||||||||| |||| ||| || | |||||| Sbjct 7751 CTCGTTCAACCATGCCGCGTGCAGGGCGCCGAGATATTCGGGCAAGCCATACACCTCCTG 7810 Query 723 ATTAATATCAGGCTCCAGCAGGTGGAACACGGTATCGGGTGCGAACTCATGCG 775 |||||| || || |||| || ||| |||||| ||| |||||||| |||| Sbjct 7811 ATTAATGTCCGGTTCCATCAAGTGATGCACGGTCCCGGCCGCGAACTCGTGCG 7863 Score = 98.7 bits (108), Expect = 2e-16 Identities = 148/205 (72%), Gaps = 8/205 (4%) Strand=Plus/Plus Query 960 GTGCGGAATGTAGGTGCTCGCGAGCACGTTGCGTTTAACGTAAATCGGTGAGCTGTGATG 1019 |||||||||| | || || |||||||| ||||| | ||| |||| |||| |||||| Sbjct 8048 GTGCGGAATGAACGTCGCCGATAGCACGTTACGTTTGAAGTAGATCGCCGAGCCGTGATG 8107 Query 1020 CACTGCAGAGCGCAGGCTTTTTGCCAGCCCGGAGAAGCTGACCGGCGGCTCGTACCATTT 1079 || | | ||| | |||| ||||| || || | |||||||||||| |||| || Sbjct 8108 GACGCCGGCGCGGAATGTTTTAGCCAGGCCCGACCACGACACCGGCGGCTCGAACCAGTT 8167 Query 1080 GCCGTTACTGATGCAC---TCGACGTAATCCAGAATGTC-GCGCTTATCGAGTACCGGCA 1135 |||| | || ||| |||||||| || ||||| || |||| || | ||| |||| Sbjct 8168 GCCG--GCCGA-CCACGTTTCGACGTAGTCAAGAATCTCGGCGC-GGTCCATTACTGGCA 8223 Query 1136 CCGGCTCACCGAAGGTGAACGCCTC 1160 ||| || ||||||||||| ||||| Sbjct 8224 CCGCGTCGCCGAAGGTGAAGGCCTC 8248 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 97832573252612