Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Physarum_20polycephalum_20[genbank_20GCA_5F000413255.3_202014-06-30]
69,687 sequences; 205,175,886 total letters
Query= NC_005856.1
Length=94800
Score E
Sequences producing significant alignments: (Bits) Value
seq5220 156 3e-33
seq3845 138 7e-28
seq3981 123 2e-23
seq11919 120 2e-22
seq8664 91.5 9e-14
>seq5220
Length=4210
Score = 156 bits (172), Expect = 3e-33
Identities = 265/383 (69%), Gaps = 6/383 (2%)
Strand=Plus/Plus
Query 72258 ATTATGATCGACTACCTGCAACTTATGCGCGTCCCCGAGCTGCAAGATAACCGAACGCTG 72317
|| || ||||| |||||||| || ||| ||| | | | | || ||||| ||
Sbjct 1634 ATCATCATCGATTACCTGCAGCTCATGAGCGGCTCGTCGTCGGGCGAGAACCGCGCGACC 1693
Query 72318 GAAATTGCCGAGATTTCTCGCTCACTGAAGGCGTTGGCGAAGGAATTACAAGTACCGGTG 72377
|| ||| | || ||||| ||||| || ||| ||||||||||| | | |||||||||
Sbjct 1694 GAGATTTCGGAAATTTCGCGCTCGCTCAAGAGCCTGGCGAAGGAACTGGACGTACCGGTG 1753
Query 72378 GTGGCATTGTCACAACTTAATCGATCGCTTGAACAGCGTGCGGACAAACGACCGGTAAAT 72437
| || | || || || || || || |||||||| || |||| || ||||| |
Sbjct 1754 ATCGCGCTCTCGCAGCTGAACCGCGGTCTGGAACAGCGCCCGAACAAGCGGCCGGTGATG 1813
Query 72438 TCAGATTTACGTGAATCAGGAGCAATTGAGCAGGACGCAGACCTGATTATGTTTCTGTAT 72497
|| || | |||||||| || ||||| ||||||||||| ||| | || |||| | |||
Sbjct 1814 TCGGACCTGCGTGAATCGGGCGCAATCGAGCAGGACGCGGACGTCATCCTGTTCATCTAT 1873
Query 72498 CGCGACGAAGTTTATCACCCGGATAG---CGAAATGAAGGGCATTGCCGAGGTAATTATC 72554
||||||||||| || ||||||| || ||| ||||||| ||||| | || |||
Sbjct 1874 CGCGACGAAGTCTACAACCCGGACAGTCCCGA---CAAGGGCACGGCCGAAATCATCATC 1930
Query 72555 GGAAAGCAACGAAATGGCCCAATTGGCACGGTGAGATTGGCTTTTAACGGCCAATACTCA 72614
|| ||||| || || || || || || | || | | | || ||||||||||| |
Sbjct 1931 GGCAAGCAGCGTAACGGTCCGATCGGACCCGTTCGCCTCACGTTCCACGGCCAATACACG 1990
Query 72615 CGGTTTGATAACTATGCCGGTGC 72637
||| ||||| | |||||| ||
Sbjct 1991 AAGTTCGATAATTTTGCCGGGGC 2013
>seq3845
Length=6461
Score = 138 bits (152), Expect = 7e-28
Identities = 333/497 (67%), Gaps = 14/497 (3%)
Strand=Plus/Plus
Query 8173 GTCATGCTCGTTGGCCGCGGTGGTGACCAGGCTGTGGGTCAGGCCACTCTTGGCATCGAC 8232
||||||| ||||||||| ||| ||| |||||| | |||||| |||| | || ||
Sbjct 97 GTCATGCACGTTGGCCGGCGTGAGCACCGCGCTGTGCGCCAGGCCGCTCTGGCTGTCCAC 156
Query 8233 ACCAATGTGGGCCTTCATGCCAAAGTGCCACTGATTGCCTTTCTTGGTCTGATGCATCTC 8292
||| ||||| || || |||| ||| || ||||| || |||||||||||||||
Sbjct 157 ACCGATGTGCAGCTCGGCACCGAAGTACCATTGCTTGCCCTTGC-GGTCTGATGCATCTC 215
Query 8293 CGGATCGCGTTGCTGCTCTTTGTTCTTGGTCGAGCTGGGTGCCTCAATGATGGTGGCATC 8352
|| ||||| || || | |||||| |||||||| || || | ||||| || || ||
Sbjct 216 GGGGTCGCGCGCCTTCTGCTCGTTCTTCGTCGAGCTCGGCGCGCCGATGATCGTCGCGTC 275
Query 8353 GACCAAGGTGCC----TTGAGTCATCATGACGCCTG-CTTCGGCCAGCCAGCGATTGATG 8407
|| | |||||| ||||| | ||||| ||| | || | || | | ||| | |
Sbjct 276 CACGATGGTGCCGCTTTTGAG-CTTCATGCCGCTGGCCTGCAGCACCCGACCGACT--TC 332
Query 8408 GTCTTGAACAATTGGCGGGCCAGTTGATGCTGCTCCAGCAGGTGGCGGAAATTCATGATG 8467
| | |||||||| | |||||| ||| |||||||||| | ||||| || | |
Sbjct 333 GGC--AAACAATTGCTCGCCCAGTTTGTGCGTCTCCAGCAGGCGCCGGAATTTGAGCAGC 390
Query 8468 GTGGTGCGGTCCGGCAAGG---CGCTATCCAGGGATAACCGGGCAAACAGACGCATGGAG 8524
|| || |||||| | || | | | ||||| | | |||||| |||||| |
Sbjct 391 GTCGTCGCGTCCGGTACGGCTTCACAACCCAGGTCAATTCCGGCAAAGCGACGCAGGTTC 450
Query 8525 GCGATTTCGTACAGAGCATCTTCCATCGCGCCATCGCTCAGGTTGTACCAATGCTGCATG 8584
||| | ||||| || || ||||| || ||| ||| ||| |||| ||||||| |
Sbjct 451 GCGCTGTCGTAGAGCGCCTCTTCGCAAGCAAAGTCGGCCAGATTGAACCAGTGCTGCACG 510
Query 8585 CAGTGAATGCGTAGCATGGTTTCCAGCGGATAAGGTCGCCGGCCATTACCAGCCTTGGGG 8644
| ||||| | |||||| ||||| | || | |||||||| || ||| ||
Sbjct 511 AAATGAATCCTCAGCATGCGCTCCAGACCAATTGGCGGGCGGCCATTGCCCCGCTTCGGA 570
Query 8645 TAAAACGGCTCGATGAC 8661
||| ||||||||| ||
Sbjct 571 TAATGCGGCTCGATCAC 587
>seq3981
Length=6180
Score = 123 bits (136), Expect = 2e-23
Identities = 167/230 (73%), Gaps = 2/230 (1%)
Strand=Plus/Minus
Query 8136 GCTCCTCTCCATGCAGCAGATTACCCAGCTGATTGAGGTCATGCTCGTTGGCCGCGGTGG 8195
|||| || ||||||||||| |||| ||| ||||||| |||| ||||| |||
Sbjct 5840 GCTCGTCGCCATGCAGCAGCGCTGGCAGCGGATGCTTGTCATGCACGTTTGCCGCCGTGA 5781
Query 8196 TGACCAGGCTGTGGGTCAGGCCACTCTTGGC-ATCGACACCAATGTGGGCCTTCATGCCA 8254
||| |||||| | ||| || | ||||| ||| ||| | ||||| |||||||||
Sbjct 5780 CTACCGCGCTGTGTGCCAGACCCGT-TTGGCTATCCACATCGATGTGCAGCTTCATGCCG 5722
Query 8255 AAGTGCCACTGATTGCCTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTG 8314
|||| |||||| | ||| ||| | ||||||||||| || || || || || || |
Sbjct 5721 AAGTACCACTGCTGGCCCTTCCTCGTCTGATGCATTTCGGGGTCTCGCGCCTTGTCCGCG 5662
Query 8315 TTCTTGGTCGAGCTGGGTGCCTCAATGATGGTGGCATCGACCAAGGTGCC 8364
||||| || || ||||| || | |||||||||||||| || | ||||||
Sbjct 5661 TTCTTCGTGGAACTGGGCGCACCGATGATGGTGGCATCCACGATGGTGCC 5612
>seq11919
Length=1104
Score = 120 bits (132), Expect = 2e-22
Identities = 144/196 (73%), Gaps = 0/196 (0%)
Strand=Plus/Minus
Query 8181 CGTTGGCCGCGGTGGTGACCAGGCTGTGGGTCAGGCCACTCTTGGCATCGACACCAATGT 8240
|||||||||| ||| |||| |||||| || ||| | ||| || || |||| ||
Sbjct 691 CGTTGGCCGCCGTGCCAACCACACTGTGGACCAAGCCCGAATCGGCGTCCACGCCAACGT 632
Query 8241 GGGCCTTCATGCCAAAGTGCCACTGATTGCCTTTCTTGGTCTGATGCATCTCCGGATCGC 8300
|||| ||||| ||||||||||| | || || ||||| || |||||||||||||| || |
Sbjct 631 GGGCTTTCATCCCAAAGTGCCATTCGTTTCCCTTCTTCGTTTGATGCATCTCCGGGTCAC 572
Query 8301 GTTGCTGCTCTTTGTTCTTGGTCGAGCTGGGTGCCTCAATGATGGTGGCATCGACCAAGG 8360
| || | | |||||||||||| || || || ||||| || ||||| |||| |
Sbjct 571 GGCTCTTCCCGGCGTTCTTGGTCGACGGTGGCGCTTCGATGATCGTCGCATCAACCAGCG 512
Query 8361 TGCCTTGAGTCATCAT 8376
|||||| |||||||
Sbjct 511 TGCCTTCCTTCATCAT 496
>seq8664
Length=1755
Score = 91.5 bits (100), Expect = 9e-14
Identities = 139/194 (72%), Gaps = 8/194 (4%)
Strand=Plus/Plus
Query 8167 ATTGAGGTCATGCTCGTTGGCCGCGGTGGTGACCAGGCTGTGGGTCAGGCC--ACTCTTG 8224
||||| ||| || |||||||||| || | | | ||||| || || |||||
Sbjct 1359 ATTGATGTCGTGAACGTTGGCCGCTGTACCAATGACGGTGTGGACCAAACCCGACTCT-- 1416
Query 8225 GCATCGACACCAATGTGGGCCTTCATGCCAAAGTGCCACTGATTGCCTTTCTTGGTCTGA 8284
|| || ||||| ||||| || ||||| || || | ||| ||||| || ||||| |||||
Sbjct 1417 GCGTCCACACCGATGTGTGCTTTCATCCCGAAATACCATTGATTTCCCTTCTTCGTCTGG 1476
Query 8285 TGCATCTCCGGATCGCG--TTGCTGCTCTTTGTTCTTGGTCGAGCTGGGTGCCTCAATGA 8342
||||||||||| || || || | | | |||||| ||||| |||||||| ||| |
Sbjct 1477 TGCATCTCCGGGTCCCGTTTTCCAGAGC--CGTTCTTCGTCGAACTGGGTGCGCTAATCA 1534
Query 8343 TGGTGGCATCGACC 8356
||| || ||||||
Sbjct 1535 AGGTCGCGTCGACC 1548
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 302977659217527
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |