Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physarum_20polycephalum_20[genbank_20GCA_5F000413255.3_202014-06-30] 69,687 sequences; 205,175,886 total letters Query= NC_005856.1 Length=94800 Score E Sequences producing significant alignments: (Bits) Value seq5220 156 3e-33 seq3845 138 7e-28 seq3981 123 2e-23 seq11919 120 2e-22 seq8664 91.5 9e-14 >seq5220 Length=4210 Score = 156 bits (172), Expect = 3e-33 Identities = 265/383 (69%), Gaps = 6/383 (2%) Strand=Plus/Plus Query 72258 ATTATGATCGACTACCTGCAACTTATGCGCGTCCCCGAGCTGCAAGATAACCGAACGCTG 72317 || || ||||| |||||||| || ||| ||| | | | | || ||||| || Sbjct 1634 ATCATCATCGATTACCTGCAGCTCATGAGCGGCTCGTCGTCGGGCGAGAACCGCGCGACC 1693 Query 72318 GAAATTGCCGAGATTTCTCGCTCACTGAAGGCGTTGGCGAAGGAATTACAAGTACCGGTG 72377 || ||| | || ||||| ||||| || ||| ||||||||||| | | ||||||||| Sbjct 1694 GAGATTTCGGAAATTTCGCGCTCGCTCAAGAGCCTGGCGAAGGAACTGGACGTACCGGTG 1753 Query 72378 GTGGCATTGTCACAACTTAATCGATCGCTTGAACAGCGTGCGGACAAACGACCGGTAAAT 72437 | || | || || || || || || |||||||| || |||| || ||||| | Sbjct 1754 ATCGCGCTCTCGCAGCTGAACCGCGGTCTGGAACAGCGCCCGAACAAGCGGCCGGTGATG 1813 Query 72438 TCAGATTTACGTGAATCAGGAGCAATTGAGCAGGACGCAGACCTGATTATGTTTCTGTAT 72497 || || | |||||||| || ||||| ||||||||||| ||| | || |||| | ||| Sbjct 1814 TCGGACCTGCGTGAATCGGGCGCAATCGAGCAGGACGCGGACGTCATCCTGTTCATCTAT 1873 Query 72498 CGCGACGAAGTTTATCACCCGGATAG---CGAAATGAAGGGCATTGCCGAGGTAATTATC 72554 ||||||||||| || ||||||| || ||| ||||||| ||||| | || ||| Sbjct 1874 CGCGACGAAGTCTACAACCCGGACAGTCCCGA---CAAGGGCACGGCCGAAATCATCATC 1930 Query 72555 GGAAAGCAACGAAATGGCCCAATTGGCACGGTGAGATTGGCTTTTAACGGCCAATACTCA 72614 || ||||| || || || || || || | || | | | || ||||||||||| | Sbjct 1931 GGCAAGCAGCGTAACGGTCCGATCGGACCCGTTCGCCTCACGTTCCACGGCCAATACACG 1990 Query 72615 CGGTTTGATAACTATGCCGGTGC 72637 ||| ||||| | |||||| || Sbjct 1991 AAGTTCGATAATTTTGCCGGGGC 2013 >seq3845 Length=6461 Score = 138 bits (152), Expect = 7e-28 Identities = 333/497 (67%), Gaps = 14/497 (3%) Strand=Plus/Plus Query 8173 GTCATGCTCGTTGGCCGCGGTGGTGACCAGGCTGTGGGTCAGGCCACTCTTGGCATCGAC 8232 ||||||| ||||||||| ||| ||| |||||| | |||||| |||| | || || Sbjct 97 GTCATGCACGTTGGCCGGCGTGAGCACCGCGCTGTGCGCCAGGCCGCTCTGGCTGTCCAC 156 Query 8233 ACCAATGTGGGCCTTCATGCCAAAGTGCCACTGATTGCCTTTCTTGGTCTGATGCATCTC 8292 ||| ||||| || || |||| ||| || ||||| || ||||||||||||||| Sbjct 157 ACCGATGTGCAGCTCGGCACCGAAGTACCATTGCTTGCCCTTGC-GGTCTGATGCATCTC 215 Query 8293 CGGATCGCGTTGCTGCTCTTTGTTCTTGGTCGAGCTGGGTGCCTCAATGATGGTGGCATC 8352 || ||||| || || | |||||| |||||||| || || | ||||| || || || Sbjct 216 GGGGTCGCGCGCCTTCTGCTCGTTCTTCGTCGAGCTCGGCGCGCCGATGATCGTCGCGTC 275 Query 8353 GACCAAGGTGCC----TTGAGTCATCATGACGCCTG-CTTCGGCCAGCCAGCGATTGATG 8407 || | |||||| ||||| | ||||| ||| | || | || | | ||| | | Sbjct 276 CACGATGGTGCCGCTTTTGAG-CTTCATGCCGCTGGCCTGCAGCACCCGACCGACT--TC 332 Query 8408 GTCTTGAACAATTGGCGGGCCAGTTGATGCTGCTCCAGCAGGTGGCGGAAATTCATGATG 8467 | | |||||||| | |||||| ||| |||||||||| | ||||| || | | Sbjct 333 GGC--AAACAATTGCTCGCCCAGTTTGTGCGTCTCCAGCAGGCGCCGGAATTTGAGCAGC 390 Query 8468 GTGGTGCGGTCCGGCAAGG---CGCTATCCAGGGATAACCGGGCAAACAGACGCATGGAG 8524 || || |||||| | || | | | ||||| | | |||||| |||||| | Sbjct 391 GTCGTCGCGTCCGGTACGGCTTCACAACCCAGGTCAATTCCGGCAAAGCGACGCAGGTTC 450 Query 8525 GCGATTTCGTACAGAGCATCTTCCATCGCGCCATCGCTCAGGTTGTACCAATGCTGCATG 8584 ||| | ||||| || || ||||| || ||| ||| ||| |||| ||||||| | Sbjct 451 GCGCTGTCGTAGAGCGCCTCTTCGCAAGCAAAGTCGGCCAGATTGAACCAGTGCTGCACG 510 Query 8585 CAGTGAATGCGTAGCATGGTTTCCAGCGGATAAGGTCGCCGGCCATTACCAGCCTTGGGG 8644 | ||||| | |||||| ||||| | || | |||||||| || ||| || Sbjct 511 AAATGAATCCTCAGCATGCGCTCCAGACCAATTGGCGGGCGGCCATTGCCCCGCTTCGGA 570 Query 8645 TAAAACGGCTCGATGAC 8661 ||| ||||||||| || Sbjct 571 TAATGCGGCTCGATCAC 587 >seq3981 Length=6180 Score = 123 bits (136), Expect = 2e-23 Identities = 167/230 (73%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 8136 GCTCCTCTCCATGCAGCAGATTACCCAGCTGATTGAGGTCATGCTCGTTGGCCGCGGTGG 8195 |||| || ||||||||||| |||| ||| ||||||| |||| ||||| ||| Sbjct 5840 GCTCGTCGCCATGCAGCAGCGCTGGCAGCGGATGCTTGTCATGCACGTTTGCCGCCGTGA 5781 Query 8196 TGACCAGGCTGTGGGTCAGGCCACTCTTGGC-ATCGACACCAATGTGGGCCTTCATGCCA 8254 ||| |||||| | ||| || | ||||| ||| ||| | ||||| ||||||||| Sbjct 5780 CTACCGCGCTGTGTGCCAGACCCGT-TTGGCTATCCACATCGATGTGCAGCTTCATGCCG 5722 Query 8255 AAGTGCCACTGATTGCCTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTG 8314 |||| |||||| | ||| ||| | ||||||||||| || || || || || || | Sbjct 5721 AAGTACCACTGCTGGCCCTTCCTCGTCTGATGCATTTCGGGGTCTCGCGCCTTGTCCGCG 5662 Query 8315 TTCTTGGTCGAGCTGGGTGCCTCAATGATGGTGGCATCGACCAAGGTGCC 8364 ||||| || || ||||| || | |||||||||||||| || | |||||| Sbjct 5661 TTCTTCGTGGAACTGGGCGCACCGATGATGGTGGCATCCACGATGGTGCC 5612 >seq11919 Length=1104 Score = 120 bits (132), Expect = 2e-22 Identities = 144/196 (73%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 8181 CGTTGGCCGCGGTGGTGACCAGGCTGTGGGTCAGGCCACTCTTGGCATCGACACCAATGT 8240 |||||||||| ||| |||| |||||| || ||| | ||| || || |||| || Sbjct 691 CGTTGGCCGCCGTGCCAACCACACTGTGGACCAAGCCCGAATCGGCGTCCACGCCAACGT 632 Query 8241 GGGCCTTCATGCCAAAGTGCCACTGATTGCCTTTCTTGGTCTGATGCATCTCCGGATCGC 8300 |||| ||||| ||||||||||| | || || ||||| || |||||||||||||| || | Sbjct 631 GGGCTTTCATCCCAAAGTGCCATTCGTTTCCCTTCTTCGTTTGATGCATCTCCGGGTCAC 572 Query 8301 GTTGCTGCTCTTTGTTCTTGGTCGAGCTGGGTGCCTCAATGATGGTGGCATCGACCAAGG 8360 | || | | |||||||||||| || || || ||||| || ||||| |||| | Sbjct 571 GGCTCTTCCCGGCGTTCTTGGTCGACGGTGGCGCTTCGATGATCGTCGCATCAACCAGCG 512 Query 8361 TGCCTTGAGTCATCAT 8376 |||||| ||||||| Sbjct 511 TGCCTTCCTTCATCAT 496 >seq8664 Length=1755 Score = 91.5 bits (100), Expect = 9e-14 Identities = 139/194 (72%), Gaps = 8/194 (4%) Strand=Plus/Plus Query 8167 ATTGAGGTCATGCTCGTTGGCCGCGGTGGTGACCAGGCTGTGGGTCAGGCC--ACTCTTG 8224 ||||| ||| || |||||||||| || | | | ||||| || || ||||| Sbjct 1359 ATTGATGTCGTGAACGTTGGCCGCTGTACCAATGACGGTGTGGACCAAACCCGACTCT-- 1416 Query 8225 GCATCGACACCAATGTGGGCCTTCATGCCAAAGTGCCACTGATTGCCTTTCTTGGTCTGA 8284 || || ||||| ||||| || ||||| || || | ||| ||||| || ||||| ||||| Sbjct 1417 GCGTCCACACCGATGTGTGCTTTCATCCCGAAATACCATTGATTTCCCTTCTTCGTCTGG 1476 Query 8285 TGCATCTCCGGATCGCG--TTGCTGCTCTTTGTTCTTGGTCGAGCTGGGTGCCTCAATGA 8342 ||||||||||| || || || | | | |||||| ||||| |||||||| ||| | Sbjct 1477 TGCATCTCCGGGTCCCGTTTTCCAGAGC--CGTTCTTCGTCGAACTGGGTGCGCTAATCA 1534 Query 8343 TGGTGGCATCGACC 8356 ||| || |||||| Sbjct 1535 AGGTCGCGTCGACC 1548 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 302977659217527