Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physarum_20polycephalum_20[genbank_20GCA_5F000413255.3_202014-06-30] 69,687 sequences; 205,175,886 total letters Query= NC_005882.1 Length=36748 Score E Sequences producing significant alignments: (Bits) Value seq2971 102 2e-17 seq1462 86.0 1e-12 >seq2971 Length=8699 Score = 102 bits (112), Expect = 2e-17 Identities = 184/269 (68%), Gaps = 0/269 (0%) Strand=Plus/Minus Query 1596 TTGACGGCGTCCTTCAGCCCCTTGCCGGCCTTGAACTTCGGGGCTTTCGACGCTGGAATC 1655 |||||||||||||| | | ||||||| ||| ||||||| || || | || |||||| Sbjct 4474 TTGACGGCGTCCTTGAACGCCTTGCCAGCCGTGAACTTGACGGTCTTGGCAGCGGGAATC 4415 Query 1656 TTGATTTCTTCGCCGGTGGCGGGATTCCGTCCGGTACGGGCGGCCCGCGCGCCCACGCTG 1715 ||||| ||||||||| ||||| || || |||||||| || ||| |||| | | Sbjct 4414 TTGATGGTTTCGCCGGTCTTCGGATTGCGGCCCGTACGGGCTGCGCGCTTGCCCGAACCG 4355 Query 1716 AATACGCCGAATCCCGTCAGCGTCACCGTGTCGCCCTTGCGCAGCGACTTCGTGATGCCT 1775 || |||||| || ||||| |||| ||| ||||| || | |||| ||| || Sbjct 4354 AAACTGCCGAAGCCGATCAGCTGAACCGCGTCACCCTTCGACACAGCCTTCTTGACCACT 4295 Query 1776 TCGAGAACGGCTTCCAGCGCAAAGCCGGAGTCGGTTTTCGTCATGCCCGTTTCTGCCGCC 1835 ||||| | | ||||||| ||||| | | || | |||||| | ||| || Sbjct 4294 TCGAGGAGCGTGTCCAGCGTCTCGCCGGTTTGTGCCTTGCTAGCGCCCGTCTGTGCTGCG 4235 Query 1836 ACGTGATTGATCAGGTCCGATTTGTTCAT 1864 ||| | |||||| ||| ||| ||||| Sbjct 4234 ACGGCGTCGATCAGTTCCTGTTTATTCAT 4206 >seq1462 Length=20089 Score = 86.0 bits (94), Expect = 1e-12 Identities = 116/160 (73%), Gaps = 4/160 (3%) Strand=Plus/Plus Query 1596 TTGACGGCGTCCTTCAGCCCCTTGCCGGCCTTGAACTTCGGGGCTTTCGACGCTGGAATC 1655 || || || ||||| | | ||||||||||| ||||||| || |||| || | |||| Sbjct 17589 TTCACTGCATCCTTGAACGCCTTGCCGGCCGTGAACTTGACGGTCTTCGCGGCGGCAATC 17648 Query 1656 TTGATTTCTTCGCCGGTGGCGGGATTCCGTCCGGTACGGGCGGCCCGCGCGCCCACGCTG 1715 | |||||| | |||||||| |||||||| || || || ||||| || | || | | Sbjct 17649 TGGATTTCCGCACCGGTGGCTGGATTCCGCCCAGTCCGCGCGGCACGTTCACC--TGTGG 17706 Query 1716 AATACG--CCGAATCCCGTCAGCGTCACCGTGTCGCCCTT 1753 || ||| ||||| || ||| | |||||||||||| || Sbjct 17707 AAAACGACCCGAAGCCGATCAACTGCACCGTGTCGCCTTT 17746 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 117374788028740