Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physarum_20polycephalum_20[genbank_20GCA_5F000413255.3_202014-06-30] 69,687 sequences; 205,175,886 total letters Query= NC_005887.1 Length=42415 Score E Sequences producing significant alignments: (Bits) Value seq4810 140 9e-29 >seq4810 Length=4794 Score = 140 bits (154), Expect = 9e-29 Identities = 197/271 (73%), Gaps = 7/271 (3%) Strand=Plus/Minus Query 24876 AGTCGGCGATCAGGTCATTCACCGTCCAGGCGGCGGCCGATGCCGCGCGCTCGGT---CT 24932 ||||| ||||||| ||| | |||||| | ||||| | | ||| || | | || Sbjct 1214 AGTCGTCGATCAGCAGATTGAG-GTCCAGTCCGCGGCAGCTCGCGCCTTCTTGATGCGCT 1156 Query 24933 TCTTCGCAGCAGCCGGATCGGCACCGTTGTCGATCGCGACGCGGTGCGCGCGGGCCGCCT 24992 ||| ||| || ||||| ||| | ||| |||||| ||| |||||| ||||| || Sbjct 1155 TCT-CGC-GC-GCCGGGTCGCCGCCGCCATCGATCTTGACCCGGTGCTGCCGGGCGAGCT 1099 Query 24993 TGCGCGCGGCCGCGAGGGACAGGTCGGGGTAGTTGCCGAGCGTCAGCTCGCGCCGGCGGC 25052 |||| || || |||||||||| ||| ||||||||||| ||||||| |||||||||| | Sbjct 1098 TGCGTGCCGCGGCGAGGGACATGTCCGGGTAGTTGCCAAGCGTCAACTCGCGCCGGGTGT 1039 Query 25053 CGCCGGCCAGCCGGTAGCGCAGAACCCATGCCGCAGTGCCGCTGGCCGAAAGGGTGAAGG 25112 |||| | || |||||||| |||| ||| ||| || ||| | || || || || | Sbjct 1038 TGCCGCCGAGACGGTAGCGAAGAATCCAACTCGCGGTCCCGGTCTTTGACAGCGTAAACG 979 Query 25113 TGAGGCCGCCGCCGTCGGATTTCGCGACCGG 25143 |||||||| | ||||| ||||| || ||||| Sbjct 978 TGAGGCCGTCACCGTCCGATTTGGCAACCGG 948 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 135494181212038