Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physarum_20polycephalum_20[genbank_20GCA_5F000413255.3_202014-06-30] 69,687 sequences; 205,175,886 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq146 111 1e-19 seq2782 100 3e-16 seq22 96.9 3e-15 seq66879 82.4 7e-11 >seq146 Length=178297 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTC 94857 ||||||||| | || || ||||| || | || || ||||| | ||| ||||| Sbjct 157699 CACCAAGTGGAGGGTGGACTCCTTCTGAATATTGTAGTCGCTGAGGGTGCGTCCGTCCTC 157758 Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917 || || ||||| | ||||| | | || || || || ||||| || || ||||| | Sbjct 157759 GAGTTGCTTTCCAGCGAAGATGAGGCGCTGTTGGTCAGGGGGAATTCCCTCCTTGTCTTG 157818 Query 94918 AATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTT 94977 ||| |||| ||||||| ||| ||||||| | ||||| || | ||||||||| || Sbjct 157819 AATCTTTGTCTTGACGCTCTCGATGGTGTCAGAGCTCTCGACCTCCAACGTGATGGTCTT 157878 Query 94978 TCCAGTAAGAGTTTTCACAAAGATCTGCA 95006 |||||| || ||||||||||| ||||||| Sbjct 157879 TCCAGTGAGTGTTTTCACAAAAATCTGCA 157907 >seq2782 Length=10868 Score = 100 bits (110), Expect = 3e-16 Identities = 153/216 (71%), Gaps = 4/216 (2%) Strand=Plus/Plus Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA--ATCC 94855 ||||||||| | || || ||||| || | ||| ||||| | || || | |||| Sbjct 9781 CACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAATCAG--AGAGGGTACGTCCATCC 9838 Query 94856 TCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCA 94915 || || || || ||| ||||||| | | ||| || || || ||||| ||||| ||||| Sbjct 9839 TCTAGTTGCTTGCCGGCAAAGATAAGACGTTGTTGGTCAGGGGGAATTCCTTCCTTGTCC 9898 Query 94916 TAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTT 94975 | || || | ||| |||| ||| ||||| | | || || || | |||||||| Sbjct 9899 TGGATCTTGGTCTTCACGGACTCGATGGTGTCTGAGCTCTCCACCTCGAGGGTGATGGTC 9958 Query 94976 TTTCCAGTAAGAGTTTTCACAAAGATCTGCATGCTT 95011 || ||||| || || ||||| ||||||||||||||| Sbjct 9959 TTGCCAGTGAGTGTCTTCACGAAGATCTGCATGCTT 9994 >seq22 Length=338851 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 94777 CACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATC 94836 || |||||| | | || | |||||||||||| || || |||||||| | || || || Sbjct 331299 CATTCCTCCGCGAAGGCGAAGCACCAAGTGCAAGGTGGACTCCTTTTGAATATTGTAGTC 331358 Query 94837 GCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGG 94896 | | ||| |||||| || || |||||| | ||||| | | ||| || || || Sbjct 331359 GGAGAGGGTGCGTCCATCCTCGAGTTGCTTTCCGGCGAAGATAAGGCGTTGTTGGTCAGG 331418 Query 94897 AGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTC 94956 || || ||||| ||||| | || |||| ||| ||| ||| || |||| | || Sbjct 331419 GGGGATTCCTTCCTTGTCTTGGATCTTTGTCTTCACGCTCTCGATGGTATCAGAGCTCTC 331478 Query 94957 GACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||| || | |||||||| ||||| || || || || || ||||| ||||| Sbjct 331479 GACCTCCAAGGTGATGGTCTTTCCGGTGAGGGTCTTGACGAAGATTTGCAT 331529 >seq66879 Length=210 Score = 82.4 bits (90), Expect = 7e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 ||||||||||| || | || | ||||| || |||||||| | ||| || |||||| Sbjct 67 CCTCCTCTCAAGCGGAGGACAAGGTGCAGTGTGCTCTCCTTTTGGATGTTGTAGTCGCTC 126 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | |||| |||||||| ||| ||||| | ||||| || | || || || || || Sbjct 127 AAAGTGCGACCATCCTCCAACTGCTTTCCAGCGAAGATCAAACGCTGTTGGTCAGGGGGG 186 Query 94901 ATACCTTCTTTGTCATAAATTTT 94923 || ||||||||||| | |||||| Sbjct 187 ATTCCTTCTTTGTCCTGAATTTT 209 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 447900699139320