Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Physarum_20polycephalum_20[genbank_20GCA_5F000413255.3_202014-06-30]
69,687 sequences; 205,175,886 total letters
Query= NC_006549.1
Length=140131
Score E
Sequences producing significant alignments: (Bits) Value
seq146 111 1e-19
seq2782 100 3e-16
seq22 96.9 3e-15
seq66879 82.4 7e-11
>seq146
Length=178297
Score = 111 bits (122), Expect = 1e-19
Identities = 150/209 (72%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTC 94857
||||||||| | || || ||||| || | || || ||||| | ||| |||||
Sbjct 157699 CACCAAGTGGAGGGTGGACTCCTTCTGAATATTGTAGTCGCTGAGGGTGCGTCCGTCCTC 157758
Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917
|| || ||||| | ||||| | | || || || || ||||| || || ||||| |
Sbjct 157759 GAGTTGCTTTCCAGCGAAGATGAGGCGCTGTTGGTCAGGGGGAATTCCCTCCTTGTCTTG 157818
Query 94918 AATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTT 94977
||| |||| ||||||| ||| ||||||| | ||||| || | ||||||||| ||
Sbjct 157819 AATCTTTGTCTTGACGCTCTCGATGGTGTCAGAGCTCTCGACCTCCAACGTGATGGTCTT 157878
Query 94978 TCCAGTAAGAGTTTTCACAAAGATCTGCA 95006
|||||| || ||||||||||| |||||||
Sbjct 157879 TCCAGTGAGTGTTTTCACAAAAATCTGCA 157907
>seq2782
Length=10868
Score = 100 bits (110), Expect = 3e-16
Identities = 153/216 (71%), Gaps = 4/216 (2%)
Strand=Plus/Plus
Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA--ATCC 94855
||||||||| | || || ||||| || | ||| ||||| | || || | ||||
Sbjct 9781 CACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAATCAG--AGAGGGTACGTCCATCC 9838
Query 94856 TCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCA 94915
|| || || || ||| ||||||| | | ||| || || || ||||| ||||| |||||
Sbjct 9839 TCTAGTTGCTTGCCGGCAAAGATAAGACGTTGTTGGTCAGGGGGAATTCCTTCCTTGTCC 9898
Query 94916 TAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTT 94975
| || || | ||| |||| ||| ||||| | | || || || | ||||||||
Sbjct 9899 TGGATCTTGGTCTTCACGGACTCGATGGTGTCTGAGCTCTCCACCTCGAGGGTGATGGTC 9958
Query 94976 TTTCCAGTAAGAGTTTTCACAAAGATCTGCATGCTT 95011
|| ||||| || || ||||| |||||||||||||||
Sbjct 9959 TTGCCAGTGAGTGTCTTCACGAAGATCTGCATGCTT 9994
>seq22
Length=338851
Score = 96.9 bits (106), Expect = 3e-15
Identities = 160/231 (69%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 94777 CACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATC 94836
|| |||||| | | || | |||||||||||| || || |||||||| | || || ||
Sbjct 331299 CATTCCTCCGCGAAGGCGAAGCACCAAGTGCAAGGTGGACTCCTTTTGAATATTGTAGTC 331358
Query 94837 GCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGG 94896
| | ||| |||||| || || |||||| | ||||| | | ||| || || ||
Sbjct 331359 GGAGAGGGTGCGTCCATCCTCGAGTTGCTTTCCGGCGAAGATAAGGCGTTGTTGGTCAGG 331418
Query 94897 AGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTC 94956
|| || ||||| ||||| | || |||| ||| ||| ||| || |||| | ||
Sbjct 331419 GGGGATTCCTTCCTTGTCTTGGATCTTTGTCTTCACGCTCTCGATGGTATCAGAGCTCTC 331478
Query 94957 GACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
||| || | |||||||| ||||| || || || || || ||||| |||||
Sbjct 331479 GACCTCCAAGGTGATGGTCTTTCCGGTGAGGGTCTTGACGAAGATTTGCAT 331529
>seq66879
Length=210
Score = 82.4 bits (90), Expect = 7e-11
Identities = 104/143 (73%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840
||||||||||| || | || | ||||| || |||||||| | ||| || ||||||
Sbjct 67 CCTCCTCTCAAGCGGAGGACAAGGTGCAGTGTGCTCTCCTTTTGGATGTTGTAGTCGCTC 126
Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900
| |||| |||||||| ||| ||||| | ||||| || | || || || || ||
Sbjct 127 AAAGTGCGACCATCCTCCAACTGCTTTCCAGCGAAGATCAAACGCTGTTGGTCAGGGGGG 186
Query 94901 ATACCTTCTTTGTCATAAATTTT 94923
|| ||||||||||| | ||||||
Sbjct 187 ATTCCTTCTTTGTCCTGAATTTT 209
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 447900699139320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |