Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physarum_20polycephalum_20[genbank_20GCA_5F000413255.3_202014-06-30] 69,687 sequences; 205,175,886 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq612 98.7 1e-15 seq1429 95.1 2e-14 >seq612 Length=73199 Score = 98.7 bits (108), Expect = 1e-15 Identities = 296/455 (65%), Gaps = 3/455 (1%) Strand=Plus/Plus Query 62892 GCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCA 62951 |||| ||| || || || || || || ||||| | | | | |||| |||||||| Sbjct 23705 GCAATAGACGCAAGGTTGCACACAGCAACCTCGTCTGGCGCGGTGTATTCGATTATCTCT 23764 Query 62952 GTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACAC 63011 ||||| || || ||||| ||| || || | ||||| ||||| ||| |||| | Sbjct 23765 GTGCAGAGGTTGCTACAAGAGATGGTCCCAAGGTTTTGCTGATTCGACTTCCTGTTGGCC 23824 Query 63012 GCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTC 63071 | ||||| || || ||| | ||| |||| || || || |||| || | || || | Sbjct 23825 GAGTCCTTGTACAGCATGTACGGATTACCGGTCTCTATTTGAGCCTCGAGGATGGCAAAC 23884 Query 63072 CAGACGACTCGAGCCTTTATTATAGATTTGTATCTCCTTTCTCTTTCGT-ATAGT--GTA 63128 || | || | ||||| ||| | || | || ||| | ||| | || Sbjct 23885 CACAAATCTTGGGCCTTCATTGTCTTCCTGGCCAAGCCCTCAGTTTGTTCATACTTGGTG 23944 Query 63129 TACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACAC 63188 ||||| ||||| | |||||||| || | | | ||| | ||| | || || Sbjct 23945 TACAACTCCTCGAATTGTTCTCCCCAGACCTCAGCAAGTCCTTTAGCTTCGTTGGGGCAG 24004 Query 63189 ATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGA 63248 | | ||||| || || | |||| ||| || ||||| |||||||| || | |||||| Sbjct 24005 AAGAGGGACCAGTCACCATTTTCCTCCACACGCTTCATGAAGAGATCTGGGACCCAAAGT 24064 Query 63249 GCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGG 63308 || |||| |||| | | || ||||| || || || ||||| |||||||||| Sbjct 24065 GCGTAGAATAAGTCTCGCGCGCGATTCTCCTCCTTGCCGGTGTTCTTGCGAAGATCGAGG 24124 Query 63309 AACGCCATAATATCAGAATGCCACGGTTCCAAGTA 63343 || | ||||| |||| |||||| ||||||| ||| Sbjct 24125 AAAGATATAATGTCAGCATGCCAGGGTTCCAGGTA 24159 >seq1429 Length=23345 Score = 95.1 bits (104), Expect = 2e-14 Identities = 131/181 (72%), Gaps = 3/181 (2%) Strand=Plus/Plus Query 33414 AGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCT 33473 ||||| | ||| || ||||| || ||||| || | ||||||||| || || | | || Sbjct 7518 AGAAATGTGGATACCCTCTACCGCTGCAAATGCTACAAGTCTCTCAGCA-AAGCTTCCCT 7576 Query 33474 GTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTAT 33533 | ||||||||| | | |||||||| |||||||| || |||||||| || || || || Sbjct 7577 CT--TGTATCCACCTCAGTGCCCAATCAGCCTTCTTCTTCACACAAGGGATTGTCTCAAT 7634 Query 33534 GGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACT 33593 ||||| || || || |||||| | | ||| | || || |||||||||||||| Sbjct 7635 AGCATTGAACAGTCTGTCTTTTTCTTGTGGGTTTTTGATGTATGTGTCGATCAAAAGACT 7694 Query 33594 A 33594 | Sbjct 7695 A 7695 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622404558480920