Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Physarum_20polycephalum_20[genbank_20GCA_5F000413255.3_202014-06-30]
69,687 sequences; 205,175,886 total letters
Query= NC_007145.2
Length=37639
Score E
Sequences producing significant alignments: (Bits) Value
seq2320 1261 0.0
>seq2320
Length=11620
Score = 1261 bits (1398), Expect = 0.0
Identities = 1726/2410 (72%), Gaps = 75/2410 (3%)
Strand=Plus/Minus
Query 3104 AACGAAATCAGCGACGAACAGCACAAGCGCATCATCGAAGCGTTCCGCGATTCGCTGTTC 3163
||||| |||||||||| ||| | |||| | ||| || || | ||||||||||||
Sbjct 9672 AACGAGTTCAGCGACGAGCAGGCCGAGCGGCTTCGCGAGGCCTTTCTTGATTCGCTGTTC 9613
Query 3164 GACTATCAGAAAGTCTGGTATCGGAACGGCGATCAGCGCACGCGCAACATCCTGAAATCG 3223
|||||||| || |||||||||||| | || ||||||||||||||||||| || || |||
Sbjct 9612 GACTATCAAAAGGTCTGGTATCGGCAAGGGCATCAGCGCACGCGCAACATTCTCAAGTCG 9553
Query 3224 CGGCAGATCGGTGCGACGTGGTACTTCGCGCGCGAGGCGCTCGTCGACGCCCTCGACACC 3283
||||||||||| ||||||||||| ||||| || ||||| || | |||||| || |||
Sbjct 9552 CGGCAGATCGGCGCGACGTGGTATTTCGCACGAGAGGCACTGGACGACGCGATCACGACC 9493
Query 3284 GACCGTAATCAAATCTTCCTGTCGGCGAGCAAGGCTCAGGCGCACGTCTTCAAGCAGTAC 3343
| ||| |||| || || |||||||| |||||||| || |||||||| |||| |||||||
Sbjct 9492 GGCCGCGATCAGATTTTTCTGTCGGCCAGCAAGGCACACGCGCACGTTTTCACGCAGTAC 9433
Query 3344 ATCACGCAGTTCGCGCGCGGGGCAGCCGACATCGAGCTCACGGGCGATCCGATTATCTTG 3403
|| ||||| ||||||| ||| ||||| ||||||| || ||||| ||||| ||||||
Sbjct 9432 ATTTGCCAGTTTGCGCGCGAGGCCGCCGATGTCGAGCTAACAGGCGACCCGATCATCTTG 9373
Query 3404 CCGAGCGGCGCGACGCTGTACTTCCTGGGCACGAACGCGCGCACCGCGCAGTCGTACCAC 3463
|||| | |||||| | ||| || |||||||||||||||||||| ||| || |||
Sbjct 9372 CCGAATGAGGCGACGTTACGCTTTCTAGGCACGAACGCGCGCACCGCACAGAGCTATCAC 9313
Query 3464 GGCAACTTCTACTTCGACGAATACTTTTGGGTTC-CGAAGTTCCGCGAGCTGAACAAGGT 3522
||||| ||||| |||||||||||||||||| | || | ||| |||||||||| |||||
Sbjct 9312 GGCAATTTCTATTTCGACGAATACTTTTGGACTGGCGGATTTC-GCGAGCTGAATAAGGT 9254
Query 3523 CGCCTCCGGCATGGCGATGCACAAGCGC-TGGCGCAAGACGTACTTCAGCACGCCGTCCA 3581
||| || ||||||||||||||||| ||| | || || || ||| ||||||||| |
Sbjct 9253 CGCGTCGGGCATGGCGATGCACAAAAAAATGGAGAAAAACCTATTTCTCCACGCCGTCGA 9194
Query 3582 GCGTCACGCACGAGGCGTACGCGTTCTGGAGCGGCGCGCACGCGAACCGCGGCCGCGCCG 3641
|| | || | || || | |||||||| |||| |||| ||||| ||||||||
Sbjct 9193 GCATTGGACATGCCGCCTATACCTTCTGGAGTGGCGAGCACTTCAACCGAGGCCGCGCAA 9134
Query 3642 CGGGCGAGC----GCATCCAGATCGACACGAGCCACGAGGCGCTCGTGCGCGGCATGTTG 3697
|| ||| | ||||| || || ||| || | |||||||| ||||| |
Sbjct 9133 AGGTCGATCATCTGCATCTGGA-CGTAACGCGCAA---GGCGCTCGCCGGCGGCCGTCTC 9078
Query 3698 TGCGAGGACGCGCAGTGGCGGCAGATCGTGACCGTGCTCGATGCGATGGCGGGCGGCTGC 3757
|||||||| ||| ||||| |||||||||||||| ||||| | || ||||| |||
Sbjct 9077 TGCGAGGATAGGCAATGGCGCCAGATCGTGACCGTCGAGGATGCCGTCGCCGGCGGGTGC 9018
Query 3758 GACCTGTTCGACATCGACGAGCTGCGCCGCGAGTACAGCGCCGAGGAATTCGCGAATCTG 3817
||||||||||| |||| |||||| || | || |||||||| |||||| ||| ||||||
Sbjct 9017 GACCTGTTCGATATCGGCGAGCTACGTCTTGAATACAGCGCGCAGGAATACGCCAATCTG 8958
Query 3818 CTCATGTGCCAGTTCATCGACGATTCGCTGTCGGTGTTCAAGCTGTCGGACCTGCAACGC 3877
| ||||||||||| ||||||||| | |||| | ||| ||| |||| | || ||
Sbjct 8957 TTGATGTGCCAGTTTATCGACGATACAGCGTCGATTTTCCCGCTCGCGGATTTACAGCGT 8898
Query 3878 TGCATGGTCGACTCGTGGGAAGAATGGGCGGACGACTTCTCGCNNNNNNNNNNNNNNNCG 3937
||||||||||| | || | ||| |
Sbjct 8897 TGCATGGTCGATT--------------GC---------CCCGCC--------------CT 8875
Query 3938 TTCGGCTATCGCGAGGTGTGGGTCGGCTACGATCCGGCGCTCACGGGCGACTCGGCGGGG 3997
|||||||||||| | ||||||||||||| || || ||||| |||| |||||||| ||
Sbjct 8874 TTCGGCTATCGCCCGCTGTGGGTCGGCTATGACCCAGCGCTATCGGGTGACTCGGCCGGC 8815
Query 3998 CTCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCTTCCGCGTGCTCGA-ACGTCA 4056
| || |||||||| | | ||
Sbjct 8814 TTGAGCGTCGTCGCACCGCCGGCGGTGCCTGGGGGCAAGTTTCGCGTGCTGCACAAGTGC 8755
Query 4057 TCAGTTCCGCGGCAACGACTTTGAGGAACAGGCCGCGGCGATCGAGGCGATCACGCAGCG 4116
|| | ||||||| || || |||| |||||||| |||||| |||||||||||||
Sbjct 8754 -CAATGGCGCGGCATGGATTTCGAGGCACAGGCCGAGGCGATACGCGCGATCACGCAGCA 8696
Query 4117 CTACAACGTCGGCTACATCGCGATCGACACCACGGGCATGGGGCAAGGCGTCTACCAGCT 4176
|||||||||| ||| || |||||||| || || ||||| || || |||||||| |||||
Sbjct 8695 ATACAACGTCGCCTATATGGCGATCGATACGACAGGCATCGGCCAGGGCGTCTATCAGCT 8636
Query 4177 CGTGCGCAAGTTCTTCCCGGCCGCCGTCGCGCTGAACTACTCGCCCGAGGTGAAAACCCG 4236
||| | |||||| ||| ||| |||||||| ||||| ||||| || || || |||
Sbjct 8635 CGTCAGGCAGTTCTATCCGAACGCGGTCGCGCTCAACTATTCGCCAGAAGTTAAGGGCCG 8576
Query 4237 CCTCGTGCTCAAGGGCCAGTCCGTCGTCCGGAACGGCCGCCTGCAATTCGACGCGGGCTG 4296
||| |||||||| ||| ||| || || | || ||||| || ||||||| || || ||
Sbjct 8575 CCTGGTGCTCAAAGGCTTGTCGGTGATCGGTAAGGGCCGGCTCGAATTCGATGCCGGATG 8516
Query 4297 GACCGATCTGGCGGCGGCGTTCATGGCGAT---CAAACAGACGATGACGGCGAGCGGCCG 4353
||| || | ||| ||||||||||||| |||| || ||||||||||||||
Sbjct 8515 GACAGACTTAGCGCAATCGTTCATGGCGATTCGCAAA---ACCATGACGGCGAGCGGAAA 8459
Query 4354 TCAGGCGACCTACACCGCCGGCCGCACCGACGAGACGGGCCACGCCGACCTGGCGTGGGC 4413
| | || || || |||| | ||| | || || ||||| ||||| || |||||
Sbjct 8458 GAAAGTCACTTATGAAGCGAGCCGTAACGAGCAAACAGGACACGCGGACCTTGCCTGGGC 8399
Query 4414 GTGCCTGCACGCGATCGACCGCGAGCCGCTCGCCGGCGGCG--GCATTCATTCATCTTCA 4471
||||||||||||| ||| | ||| ||| | | |||| | || || | | | |
Sbjct 8398 GTGCCTGCACGCGCTCGGCAACGAACCGTTAGAAGGCGTCACCGCCAACAAT-ACCGGCT 8340
Query 4472 TTCACGGAGTTTTACGCATGAGCAAgcgccgatcgcgcgcgccgcgcacgttcgcggccg 4531
|| | |||||| | ||||||||||| | | || |||||| | |||
Sbjct 8339 TT-ATGGAGTTCTCAAATTGAGCAAGCGC--AACATGCACGCCGCACC--------GCC- 8292
Query 4532 cgcccaatccga--gcgccggcagcgccg-cgccggcgcgtgccgAGGTCTTCACGTTCG 4588
||| | || || ||| | || || || ||||| || | ||||||| |||||| ||||
Sbjct 8291 CGCACTGTC-GACTGCGGCCGCCCCGTCGACGCCGCCGAGGGCCGAGGCCTTCACCTTCG 8233
Query 4589 ACGATCCGACGCCCGTCATGAACCGGGCCGAGATTCTCGATTACGTCGAGTGCTGGTCGA 4648
||| || ||| || ||| |||| ||||||||||| || |||||||| ||||||
Sbjct 8232 GCGACGCGGTGCCAGTAATGGACCGCGCCGAGATTCTTGACTACGTCGAAACGTGGTCGG 8173
Query 4649 ACGGCGAATGGTTCGAGCCGCCGGTCAGCTTCGCCGGCCTGGCGAAATCGTTTCGCGCGA 4708
|||| | ||||||||||||||||| | | |||||||| ||| | || |||||
Sbjct 8172 CCGGCAACTGGTTCGAGCCGCCGGTGTCGTGGTCGGGCCTGGCTAAAACATTCCGCGCCG 8113
Query 4709 GCACGCACCATAGCTCGGCGCTGTTCTTCAAGGCGAACGTGCTGGCGTCGACATTCCGCC 4768
|| || || |||||||| | | |||||| |||||||| || |||| ||| |
Sbjct 8112 GCGTCCATCACGGCTCGGCGATCTACTTCAAACGTAACGTGCTATCGGCGACGTTCATTC 8053
Query 4769 CGCACCGCTGGCTGTCGCGGCACGCGTTCGAGCGGTGGGCGCTCGATTTCCTGACGTTCG 4828
||||| | | ||| |||| | | |||||| |||||||||||||||||| |||||||
Sbjct 8052 CGCACAGGTTGCTCACGCGCGAAGTGTTCGATAAGTGGGCGCTCGATTTCCTCACGTTCG 7993
Query 4829 GCAACGGCTATCTGGAACGCCGCCGCAACATGGTCGGCGGCACGCTGCGGCTTGAGCCCG 4888
|||| || ||||| || | || ||| | | ||||| |||| | | |||| |
Sbjct 7992 GCAATGGGTATCTTGAGCTGCGAAAGAACCGGCTAGGCGGGCCGCTTGCGTTCGAGCGTG 7933
Query 4889 CGCTCGCGAAGTACGTCCGGCGCAAGGCCGATTTCAACGGCTTCGTGTACGTGAACGGCT 4948
||| || |||||| | || ||| | | || | | ||||| | || ||||| |
Sbjct 7932 CGCCAGCCAAGTACATGCGCCGCGCGACGGACCTACAGCGCTTCTATCAGGTCAACGGGT 7873
Query 4949 GGCAGGAGCGGCACGAGTTCGAGCCCGACAGCGTGTTCCAGCTCGTGCGGCCGGACATCA 5008
|||||| | ||||||||||| | ||| | |||| || | || |||||||| |
Sbjct 7872 GGCAGGCGTCGCACGAGTTCGCGGCCGGGACCGTGCATCACTTGATGGAACCGGACATTA 7813
Query 5009 ATCAGGAGGTCTACGGCCTGCCCGAGTATCTGAGCTCGCTGCACTCGGCCTGGCTGAACG 5068
|||||||||| || ||| ||||||| ||||| || | |||||| |||| ||| ||||||
Sbjct 7812 ATCAGGAGGTGTATGGCTTGCCCGAATATCTCGGCGCCCTGCACGCGGCATGGTTGAACG 7753
Query 5069 AATCGTCGACGCTGTTCCGGCGCAAGTATTACGAGAACGGCAGCCACGCCGGCTTCATCC 5128
| ||| ||||||| || || || |||||||||||| || ||||| ||||| ||||
Sbjct 7752 AGTCGGCGACGCTATTTCGCCGGCGGTATTACGAGAATGGTTCGCACGCGGGCTTTATCC 7693
Query 5129 TGTACATGACCGACGCCGCGCAGAAGCAGGACGACGTGGACAACATGCGCGACGCGCTGA 5188
|||||||||| || || |||||| ||| ||| || |||||||||||||| ||| |||
Sbjct 7692 TGTACATGACGGATGCGGCGCAGTCGCAAACCGATGTCGACAACATGCGCGAGGCGTTGA 7633
Query 5189 AGAACGCGAAGGGGCCTGGCAACTTCCGCAACGTGTTCATGTACGCGCCGGGCGGGAAGA 5248
| ||| |||||||| ||||| ||||| ||| ||||||||||||||||| ||| ||||
Sbjct 7632 AAAACAGCAAGGGGCCAGGCAATTTCCGAAACCTGTTCATGTACGCGCCGAACGGCAAGA 7573
Query 5249 AGGACGGCATCCAGCTCATCCCCGTGTCCGAGGTCGCCGCGAAGGACGAGTTCTTCAACA 5308
| ||||| ||||||||||| ||||| ||||||||| | ||||| |||||||| ||||| |
Sbjct 7572 AAGACGGTATCCAGCTCATTCCCGTTTCCGAGGTCACGGCGAAAGACGAGTTTTTCAATA 7513
Query 5309 TCAAGAACGTGACGCGCGATGACCTGCTCGCCGCGCACCGCGTGCCGCCGCAGTTGCTTG 5368
||||||| || |||||||| ||| ||||||| ||||| ||| | || |||||| | | |
Sbjct 7512 TCAAGAATGTCACGCGCGACGACTTGCTCGCGGCGCATCGCATCCCCCCGCAGCTCATGG 7453
Query 5369 GCATCGTGCCGAGCAATTCGGGCGGGTTCGGTACACCGGACACCGCCGCGCGCGTGTTCG 5428
| ||||||||||||||| | ||||| || || | | ||||| ||||| || ||||
Sbjct 7452 GGATCGTGCCGAGCAATACCGGCGGATTTGGCGCGGCCGACACGGCCGCCGAGGTATTCG 7393
Query 5429 GGCGCAACGAAATCAGGCCGCTACAGGCGCGCTTCGCCGAGCTGAACGACTGGCTCGGCG 5488
|||| || |||||| || || || ||| |||||| |||| || |||||| ||||||
Sbjct 7392 GGCGTAATGAAATCGAACCCCTGCAACGGCGGTTCGCCCAGCTCAATGACTGGATCGGCG 7333
Query 5489 AGGAGGTCGT 5498
| ||||| ||
Sbjct 7332 ACGAGGTTGT 7323
Score = 138 bits (152), Expect = 3e-28
Identities = 248/356 (70%), Gaps = 6/356 (2%)
Strand=Plus/Minus
Query 20271 ATGTGCGCGATCAGGATCTTCGCGAGCGCGTCGCCGACGATCGGCGCCAGCGAGTAGCGC 20330
|| ||||||||| ||| |||||||| |||||| ||| |||| || || ||
Sbjct 10035 ATATGCGCGATCGCGATTTTCGCGAGGGCGTCGGCGATCGCCGGCTTGAGGCTGTGCCGG 9976
Query 20331 CCGGCGATCGCGTGGACGATCGAGCCGATCGTCT-GCCGATGCCAGCTCTTCTCGCGGCG 20389
||||||||| | | ||||||| ||||| ||| | |||| ||||||||| ||| ||
Sbjct 9975 CCGGCGATCTTGCGCACGATCGGGCCGAGCGTTTCGCCG-TGCCAGCTCGCCTCCTTTCG 9917
Query 20390 CTCCTGCATGCCGCTCGTCATCGCGGCCGAGCGCGCGCGGATGGTGATGATGTCCGGCGC 20449
|| | |||| | | ||||||| |||||||||||| || ||||||| ||| |||| |
Sbjct 9916 TTCGTCCATGTCCTTGGTCATCGAGGCCGAGCGCGCCCGAATGGTGAGGATATCCGCGCC 9857
Query 20450 GCCGCTGTGCTCGACTTCGTTCACAACGAAGCTGCCCTTGTCGACGA-GCGGCTCGCCGG 20508
|||||||||||| || |||| || ||| |||||||||||||| || | | |||
Sbjct 9856 GCCGCTGTGCTCTACCTCGTCGACGGTAAAGGCGCCCTTGTCGACGACGCCGGT-ATCGG 9798
Query 20509 CCCATCCGATCGACGCCTTGATCGTCGCGCCGCGCTTCGGAATGTCCAGATCGTTTTTCG 20568
||| |||| |||| | | | |||||||||| || || | || | | |
Sbjct 9797 ACCAGCCGAACGACACGCGCAGCACGGCGCCGCGCTCGGGGATCGCAAGCCGGCCGTCTG 9738
Query 20569 AGTCGTCGAGCACGATATCGATGGTGTCCGCCTCGT--CGGAGCGCGATTCCGAAA 20622
|| | || |||||||||| |||| || |||| || |||||| || ||||
Sbjct 9737 CATCATTGACGACGATATCGAGCATGTCGGCTTCGTCGCGCCGCGCGACTCGGAAA 9682
Score = 114 bits (126), Expect = 3e-21
Identities = 226/333 (68%), Gaps = 11/333 (3%)
Strand=Plus/Minus
Query 18045 GCCAGCCG--TAGGAGAAAAAGAAGGTAATGAATCAGAAATTCAGCGGAGAGGTCGGGCA 18102
|||||||| | ||| || | || |||||| | |||||||||| ||| | |||||||
Sbjct 11615 GCCAGCCGCGTTGGAAGAATAAAAAGTAATGCAACAGAAATTCAACGGGAACATCGGGCA 11556
Query 18103 GGTTGCTGGCGGAGATGTAAAGGCCAGTAATGCGCAAGCCAACGTCAATATCCACCTGCA 18162
||||| ||| | |||| ||| | | || |||||| ||||||| | | || | ||
Sbjct 11555 AGTTGCAGGCCGCCATGTCAAGACGAATAGCGCGCAATCCAACGTAAGCGTGCATATCCA 11496
Query 18163 TAGCGGGGCAGAATCGAAGCAG---TACATCAGCGAACGCCAACGGCGCGCAATCGGAGC 18219
| || || |||| | | ||||||||||| || || || | || |||| |
Sbjct 11495 CAACG------AACCGAAACCGAGTTACATCAGCGATCGTCAGCGTAGTGCGATCGCACG 11442
Query 18220 AAAAGTCTTTGAGCTTGAGGCAAAGACCGGTGTCGAGAAACTCATGGTGTACCGCCGCTT 18279
|| | | | || | | || ||||| ||| || || ||||| || || |||||
Sbjct 11441 CAAGGCGTATCAGATCCAAGCCAAGACGCAGACCGACAAGCTGATGGTCTATCGGCGCTT 11382
Query 18280 GAGGACGGTGTTCAAATTCTCGAGCATGGACGAGATGCCGCGTGATCTGTTTGAACGCGT 18339
|| ||| |||||||| || ||| |||||||||||||||||| || ||| | || |
Sbjct 11381 GATGACCGTGTTCAAGTTTCCGAACATGGACGAGATGCCGCGCGACGTGTACCAGCGTGC 11322
Query 18340 GATGCGGTATCTCGACGGGTGGATACGCAACGG 18372
||| |||||||| | |||| | || || ||
Sbjct 11321 AATGTCATATCTCGAAGTGTGGTTGCGAAATGG 11289
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 120223628566294
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