Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physarum_20polycephalum_20[genbank_20GCA_5F000413255.3_202014-06-30] 69,687 sequences; 205,175,886 total letters Query= NC_007145.2 Length=37639 Score E Sequences producing significant alignments: (Bits) Value seq2320 1261 0.0 >seq2320 Length=11620 Score = 1261 bits (1398), Expect = 0.0 Identities = 1726/2410 (72%), Gaps = 75/2410 (3%) Strand=Plus/Minus Query 3104 AACGAAATCAGCGACGAACAGCACAAGCGCATCATCGAAGCGTTCCGCGATTCGCTGTTC 3163 ||||| |||||||||| ||| | |||| | ||| || || | |||||||||||| Sbjct 9672 AACGAGTTCAGCGACGAGCAGGCCGAGCGGCTTCGCGAGGCCTTTCTTGATTCGCTGTTC 9613 Query 3164 GACTATCAGAAAGTCTGGTATCGGAACGGCGATCAGCGCACGCGCAACATCCTGAAATCG 3223 |||||||| || |||||||||||| | || ||||||||||||||||||| || || ||| Sbjct 9612 GACTATCAAAAGGTCTGGTATCGGCAAGGGCATCAGCGCACGCGCAACATTCTCAAGTCG 9553 Query 3224 CGGCAGATCGGTGCGACGTGGTACTTCGCGCGCGAGGCGCTCGTCGACGCCCTCGACACC 3283 ||||||||||| ||||||||||| ||||| || ||||| || | |||||| || ||| Sbjct 9552 CGGCAGATCGGCGCGACGTGGTATTTCGCACGAGAGGCACTGGACGACGCGATCACGACC 9493 Query 3284 GACCGTAATCAAATCTTCCTGTCGGCGAGCAAGGCTCAGGCGCACGTCTTCAAGCAGTAC 3343 | ||| |||| || || |||||||| |||||||| || |||||||| |||| ||||||| Sbjct 9492 GGCCGCGATCAGATTTTTCTGTCGGCCAGCAAGGCACACGCGCACGTTTTCACGCAGTAC 9433 Query 3344 ATCACGCAGTTCGCGCGCGGGGCAGCCGACATCGAGCTCACGGGCGATCCGATTATCTTG 3403 || ||||| ||||||| ||| ||||| ||||||| || ||||| ||||| |||||| Sbjct 9432 ATTTGCCAGTTTGCGCGCGAGGCCGCCGATGTCGAGCTAACAGGCGACCCGATCATCTTG 9373 Query 3404 CCGAGCGGCGCGACGCTGTACTTCCTGGGCACGAACGCGCGCACCGCGCAGTCGTACCAC 3463 |||| | |||||| | ||| || |||||||||||||||||||| ||| || ||| Sbjct 9372 CCGAATGAGGCGACGTTACGCTTTCTAGGCACGAACGCGCGCACCGCACAGAGCTATCAC 9313 Query 3464 GGCAACTTCTACTTCGACGAATACTTTTGGGTTC-CGAAGTTCCGCGAGCTGAACAAGGT 3522 ||||| ||||| |||||||||||||||||| | || | ||| |||||||||| ||||| Sbjct 9312 GGCAATTTCTATTTCGACGAATACTTTTGGACTGGCGGATTTC-GCGAGCTGAATAAGGT 9254 Query 3523 CGCCTCCGGCATGGCGATGCACAAGCGC-TGGCGCAAGACGTACTTCAGCACGCCGTCCA 3581 ||| || ||||||||||||||||| ||| | || || || ||| ||||||||| | Sbjct 9253 CGCGTCGGGCATGGCGATGCACAAAAAAATGGAGAAAAACCTATTTCTCCACGCCGTCGA 9194 Query 3582 GCGTCACGCACGAGGCGTACGCGTTCTGGAGCGGCGCGCACGCGAACCGCGGCCGCGCCG 3641 || | || | || || | |||||||| |||| |||| ||||| |||||||| Sbjct 9193 GCATTGGACATGCCGCCTATACCTTCTGGAGTGGCGAGCACTTCAACCGAGGCCGCGCAA 9134 Query 3642 CGGGCGAGC----GCATCCAGATCGACACGAGCCACGAGGCGCTCGTGCGCGGCATGTTG 3697 || ||| | ||||| || || ||| || | |||||||| ||||| | Sbjct 9133 AGGTCGATCATCTGCATCTGGA-CGTAACGCGCAA---GGCGCTCGCCGGCGGCCGTCTC 9078 Query 3698 TGCGAGGACGCGCAGTGGCGGCAGATCGTGACCGTGCTCGATGCGATGGCGGGCGGCTGC 3757 |||||||| ||| ||||| |||||||||||||| ||||| | || ||||| ||| Sbjct 9077 TGCGAGGATAGGCAATGGCGCCAGATCGTGACCGTCGAGGATGCCGTCGCCGGCGGGTGC 9018 Query 3758 GACCTGTTCGACATCGACGAGCTGCGCCGCGAGTACAGCGCCGAGGAATTCGCGAATCTG 3817 ||||||||||| |||| |||||| || | || |||||||| |||||| ||| |||||| Sbjct 9017 GACCTGTTCGATATCGGCGAGCTACGTCTTGAATACAGCGCGCAGGAATACGCCAATCTG 8958 Query 3818 CTCATGTGCCAGTTCATCGACGATTCGCTGTCGGTGTTCAAGCTGTCGGACCTGCAACGC 3877 | ||||||||||| ||||||||| | |||| | ||| ||| |||| | || || Sbjct 8957 TTGATGTGCCAGTTTATCGACGATACAGCGTCGATTTTCCCGCTCGCGGATTTACAGCGT 8898 Query 3878 TGCATGGTCGACTCGTGGGAAGAATGGGCGGACGACTTCTCGCNNNNNNNNNNNNNNNCG 3937 ||||||||||| | || | ||| | Sbjct 8897 TGCATGGTCGATT--------------GC---------CCCGCC--------------CT 8875 Query 3938 TTCGGCTATCGCGAGGTGTGGGTCGGCTACGATCCGGCGCTCACGGGCGACTCGGCGGGG 3997 |||||||||||| | ||||||||||||| || || ||||| |||| |||||||| || Sbjct 8874 TTCGGCTATCGCCCGCTGTGGGTCGGCTATGACCCAGCGCTATCGGGTGACTCGGCCGGC 8815 Query 3998 CTCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCTTCCGCGTGCTCGA-ACGTCA 4056 | || |||||||| | | || Sbjct 8814 TTGAGCGTCGTCGCACCGCCGGCGGTGCCTGGGGGCAAGTTTCGCGTGCTGCACAAGTGC 8755 Query 4057 TCAGTTCCGCGGCAACGACTTTGAGGAACAGGCCGCGGCGATCGAGGCGATCACGCAGCG 4116 || | ||||||| || || |||| |||||||| |||||| ||||||||||||| Sbjct 8754 -CAATGGCGCGGCATGGATTTCGAGGCACAGGCCGAGGCGATACGCGCGATCACGCAGCA 8696 Query 4117 CTACAACGTCGGCTACATCGCGATCGACACCACGGGCATGGGGCAAGGCGTCTACCAGCT 4176 |||||||||| ||| || |||||||| || || ||||| || || |||||||| ||||| Sbjct 8695 ATACAACGTCGCCTATATGGCGATCGATACGACAGGCATCGGCCAGGGCGTCTATCAGCT 8636 Query 4177 CGTGCGCAAGTTCTTCCCGGCCGCCGTCGCGCTGAACTACTCGCCCGAGGTGAAAACCCG 4236 ||| | |||||| ||| ||| |||||||| ||||| ||||| || || || ||| Sbjct 8635 CGTCAGGCAGTTCTATCCGAACGCGGTCGCGCTCAACTATTCGCCAGAAGTTAAGGGCCG 8576 Query 4237 CCTCGTGCTCAAGGGCCAGTCCGTCGTCCGGAACGGCCGCCTGCAATTCGACGCGGGCTG 4296 ||| |||||||| ||| ||| || || | || ||||| || ||||||| || || || Sbjct 8575 CCTGGTGCTCAAAGGCTTGTCGGTGATCGGTAAGGGCCGGCTCGAATTCGATGCCGGATG 8516 Query 4297 GACCGATCTGGCGGCGGCGTTCATGGCGAT---CAAACAGACGATGACGGCGAGCGGCCG 4353 ||| || | ||| ||||||||||||| |||| || |||||||||||||| Sbjct 8515 GACAGACTTAGCGCAATCGTTCATGGCGATTCGCAAA---ACCATGACGGCGAGCGGAAA 8459 Query 4354 TCAGGCGACCTACACCGCCGGCCGCACCGACGAGACGGGCCACGCCGACCTGGCGTGGGC 4413 | | || || || |||| | ||| | || || ||||| ||||| || ||||| Sbjct 8458 GAAAGTCACTTATGAAGCGAGCCGTAACGAGCAAACAGGACACGCGGACCTTGCCTGGGC 8399 Query 4414 GTGCCTGCACGCGATCGACCGCGAGCCGCTCGCCGGCGGCG--GCATTCATTCATCTTCA 4471 ||||||||||||| ||| | ||| ||| | | |||| | || || | | | | Sbjct 8398 GTGCCTGCACGCGCTCGGCAACGAACCGTTAGAAGGCGTCACCGCCAACAAT-ACCGGCT 8340 Query 4472 TTCACGGAGTTTTACGCATGAGCAAgcgccgatcgcgcgcgccgcgcacgttcgcggccg 4531 || | |||||| | ||||||||||| | | || |||||| | ||| Sbjct 8339 TT-ATGGAGTTCTCAAATTGAGCAAGCGC--AACATGCACGCCGCACC--------GCC- 8292 Query 4532 cgcccaatccga--gcgccggcagcgccg-cgccggcgcgtgccgAGGTCTTCACGTTCG 4588 ||| | || || ||| | || || || ||||| || | ||||||| |||||| |||| Sbjct 8291 CGCACTGTC-GACTGCGGCCGCCCCGTCGACGCCGCCGAGGGCCGAGGCCTTCACCTTCG 8233 Query 4589 ACGATCCGACGCCCGTCATGAACCGGGCCGAGATTCTCGATTACGTCGAGTGCTGGTCGA 4648 ||| || ||| || ||| |||| ||||||||||| || |||||||| |||||| Sbjct 8232 GCGACGCGGTGCCAGTAATGGACCGCGCCGAGATTCTTGACTACGTCGAAACGTGGTCGG 8173 Query 4649 ACGGCGAATGGTTCGAGCCGCCGGTCAGCTTCGCCGGCCTGGCGAAATCGTTTCGCGCGA 4708 |||| | ||||||||||||||||| | | |||||||| ||| | || ||||| Sbjct 8172 CCGGCAACTGGTTCGAGCCGCCGGTGTCGTGGTCGGGCCTGGCTAAAACATTCCGCGCCG 8113 Query 4709 GCACGCACCATAGCTCGGCGCTGTTCTTCAAGGCGAACGTGCTGGCGTCGACATTCCGCC 4768 || || || |||||||| | | |||||| |||||||| || |||| ||| | Sbjct 8112 GCGTCCATCACGGCTCGGCGATCTACTTCAAACGTAACGTGCTATCGGCGACGTTCATTC 8053 Query 4769 CGCACCGCTGGCTGTCGCGGCACGCGTTCGAGCGGTGGGCGCTCGATTTCCTGACGTTCG 4828 ||||| | | ||| |||| | | |||||| |||||||||||||||||| ||||||| Sbjct 8052 CGCACAGGTTGCTCACGCGCGAAGTGTTCGATAAGTGGGCGCTCGATTTCCTCACGTTCG 7993 Query 4829 GCAACGGCTATCTGGAACGCCGCCGCAACATGGTCGGCGGCACGCTGCGGCTTGAGCCCG 4888 |||| || ||||| || | || ||| | | ||||| |||| | | |||| | Sbjct 7992 GCAATGGGTATCTTGAGCTGCGAAAGAACCGGCTAGGCGGGCCGCTTGCGTTCGAGCGTG 7933 Query 4889 CGCTCGCGAAGTACGTCCGGCGCAAGGCCGATTTCAACGGCTTCGTGTACGTGAACGGCT 4948 ||| || |||||| | || ||| | | || | | ||||| | || ||||| | Sbjct 7932 CGCCAGCCAAGTACATGCGCCGCGCGACGGACCTACAGCGCTTCTATCAGGTCAACGGGT 7873 Query 4949 GGCAGGAGCGGCACGAGTTCGAGCCCGACAGCGTGTTCCAGCTCGTGCGGCCGGACATCA 5008 |||||| | ||||||||||| | ||| | |||| || | || |||||||| | Sbjct 7872 GGCAGGCGTCGCACGAGTTCGCGGCCGGGACCGTGCATCACTTGATGGAACCGGACATTA 7813 Query 5009 ATCAGGAGGTCTACGGCCTGCCCGAGTATCTGAGCTCGCTGCACTCGGCCTGGCTGAACG 5068 |||||||||| || ||| ||||||| ||||| || | |||||| |||| ||| |||||| Sbjct 7812 ATCAGGAGGTGTATGGCTTGCCCGAATATCTCGGCGCCCTGCACGCGGCATGGTTGAACG 7753 Query 5069 AATCGTCGACGCTGTTCCGGCGCAAGTATTACGAGAACGGCAGCCACGCCGGCTTCATCC 5128 | ||| ||||||| || || || |||||||||||| || ||||| ||||| |||| Sbjct 7752 AGTCGGCGACGCTATTTCGCCGGCGGTATTACGAGAATGGTTCGCACGCGGGCTTTATCC 7693 Query 5129 TGTACATGACCGACGCCGCGCAGAAGCAGGACGACGTGGACAACATGCGCGACGCGCTGA 5188 |||||||||| || || |||||| ||| ||| || |||||||||||||| ||| ||| Sbjct 7692 TGTACATGACGGATGCGGCGCAGTCGCAAACCGATGTCGACAACATGCGCGAGGCGTTGA 7633 Query 5189 AGAACGCGAAGGGGCCTGGCAACTTCCGCAACGTGTTCATGTACGCGCCGGGCGGGAAGA 5248 | ||| |||||||| ||||| ||||| ||| ||||||||||||||||| ||| |||| Sbjct 7632 AAAACAGCAAGGGGCCAGGCAATTTCCGAAACCTGTTCATGTACGCGCCGAACGGCAAGA 7573 Query 5249 AGGACGGCATCCAGCTCATCCCCGTGTCCGAGGTCGCCGCGAAGGACGAGTTCTTCAACA 5308 | ||||| ||||||||||| ||||| ||||||||| | ||||| |||||||| ||||| | Sbjct 7572 AAGACGGTATCCAGCTCATTCCCGTTTCCGAGGTCACGGCGAAAGACGAGTTTTTCAATA 7513 Query 5309 TCAAGAACGTGACGCGCGATGACCTGCTCGCCGCGCACCGCGTGCCGCCGCAGTTGCTTG 5368 ||||||| || |||||||| ||| ||||||| ||||| ||| | || |||||| | | | Sbjct 7512 TCAAGAATGTCACGCGCGACGACTTGCTCGCGGCGCATCGCATCCCCCCGCAGCTCATGG 7453 Query 5369 GCATCGTGCCGAGCAATTCGGGCGGGTTCGGTACACCGGACACCGCCGCGCGCGTGTTCG 5428 | ||||||||||||||| | ||||| || || | | ||||| ||||| || |||| Sbjct 7452 GGATCGTGCCGAGCAATACCGGCGGATTTGGCGCGGCCGACACGGCCGCCGAGGTATTCG 7393 Query 5429 GGCGCAACGAAATCAGGCCGCTACAGGCGCGCTTCGCCGAGCTGAACGACTGGCTCGGCG 5488 |||| || |||||| || || || ||| |||||| |||| || |||||| |||||| Sbjct 7392 GGCGTAATGAAATCGAACCCCTGCAACGGCGGTTCGCCCAGCTCAATGACTGGATCGGCG 7333 Query 5489 AGGAGGTCGT 5498 | ||||| || Sbjct 7332 ACGAGGTTGT 7323 Score = 138 bits (152), Expect = 3e-28 Identities = 248/356 (70%), Gaps = 6/356 (2%) Strand=Plus/Minus Query 20271 ATGTGCGCGATCAGGATCTTCGCGAGCGCGTCGCCGACGATCGGCGCCAGCGAGTAGCGC 20330 || ||||||||| ||| |||||||| |||||| ||| |||| || || || Sbjct 10035 ATATGCGCGATCGCGATTTTCGCGAGGGCGTCGGCGATCGCCGGCTTGAGGCTGTGCCGG 9976 Query 20331 CCGGCGATCGCGTGGACGATCGAGCCGATCGTCT-GCCGATGCCAGCTCTTCTCGCGGCG 20389 ||||||||| | | ||||||| ||||| ||| | |||| ||||||||| ||| || Sbjct 9975 CCGGCGATCTTGCGCACGATCGGGCCGAGCGTTTCGCCG-TGCCAGCTCGCCTCCTTTCG 9917 Query 20390 CTCCTGCATGCCGCTCGTCATCGCGGCCGAGCGCGCGCGGATGGTGATGATGTCCGGCGC 20449 || | |||| | | ||||||| |||||||||||| || ||||||| ||| |||| | Sbjct 9916 TTCGTCCATGTCCTTGGTCATCGAGGCCGAGCGCGCCCGAATGGTGAGGATATCCGCGCC 9857 Query 20450 GCCGCTGTGCTCGACTTCGTTCACAACGAAGCTGCCCTTGTCGACGA-GCGGCTCGCCGG 20508 |||||||||||| || |||| || ||| |||||||||||||| || | | ||| Sbjct 9856 GCCGCTGTGCTCTACCTCGTCGACGGTAAAGGCGCCCTTGTCGACGACGCCGGT-ATCGG 9798 Query 20509 CCCATCCGATCGACGCCTTGATCGTCGCGCCGCGCTTCGGAATGTCCAGATCGTTTTTCG 20568 ||| |||| |||| | | | |||||||||| || || | || | | | Sbjct 9797 ACCAGCCGAACGACACGCGCAGCACGGCGCCGCGCTCGGGGATCGCAAGCCGGCCGTCTG 9738 Query 20569 AGTCGTCGAGCACGATATCGATGGTGTCCGCCTCGT--CGGAGCGCGATTCCGAAA 20622 || | || |||||||||| |||| || |||| || |||||| || |||| Sbjct 9737 CATCATTGACGACGATATCGAGCATGTCGGCTTCGTCGCGCCGCGCGACTCGGAAA 9682 Score = 114 bits (126), Expect = 3e-21 Identities = 226/333 (68%), Gaps = 11/333 (3%) Strand=Plus/Minus Query 18045 GCCAGCCG--TAGGAGAAAAAGAAGGTAATGAATCAGAAATTCAGCGGAGAGGTCGGGCA 18102 |||||||| | ||| || | || |||||| | |||||||||| ||| | ||||||| Sbjct 11615 GCCAGCCGCGTTGGAAGAATAAAAAGTAATGCAACAGAAATTCAACGGGAACATCGGGCA 11556 Query 18103 GGTTGCTGGCGGAGATGTAAAGGCCAGTAATGCGCAAGCCAACGTCAATATCCACCTGCA 18162 ||||| ||| | |||| ||| | | || |||||| ||||||| | | || | || Sbjct 11555 AGTTGCAGGCCGCCATGTCAAGACGAATAGCGCGCAATCCAACGTAAGCGTGCATATCCA 11496 Query 18163 TAGCGGGGCAGAATCGAAGCAG---TACATCAGCGAACGCCAACGGCGCGCAATCGGAGC 18219 | || || |||| | | ||||||||||| || || || | || |||| | Sbjct 11495 CAACG------AACCGAAACCGAGTTACATCAGCGATCGTCAGCGTAGTGCGATCGCACG 11442 Query 18220 AAAAGTCTTTGAGCTTGAGGCAAAGACCGGTGTCGAGAAACTCATGGTGTACCGCCGCTT 18279 || | | | || | | || ||||| ||| || || ||||| || || ||||| Sbjct 11441 CAAGGCGTATCAGATCCAAGCCAAGACGCAGACCGACAAGCTGATGGTCTATCGGCGCTT 11382 Query 18280 GAGGACGGTGTTCAAATTCTCGAGCATGGACGAGATGCCGCGTGATCTGTTTGAACGCGT 18339 || ||| |||||||| || ||| |||||||||||||||||| || ||| | || | Sbjct 11381 GATGACCGTGTTCAAGTTTCCGAACATGGACGAGATGCCGCGCGACGTGTACCAGCGTGC 11322 Query 18340 GATGCGGTATCTCGACGGGTGGATACGCAACGG 18372 ||| |||||||| | |||| | || || || Sbjct 11321 AATGTCATATCTCGAAGTGTGGTTGCGAAATGG 11289 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 120223628566294