Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physarum_20polycephalum_20[genbank_20GCA_5F000413255.3_202014-06-30] 69,687 sequences; 205,175,886 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq612 221 3e-52 seq615 96.9 9e-15 >seq612 Length=73199 Score = 221 bits (244), Expect = 3e-52 Identities = 447/659 (68%), Gaps = 7/659 (1%) Strand=Plus/Minus Query 363805 AGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTATCTCGAGCCT 363864 || || || ||||| || || || ||||| || || || ||||| | || || || || Sbjct 24207 AGATATGTTGACCAAGGAGGCGGCAAGCGAAAGGGAGCCTTTGCAGTTTACCTGGAACCC 24148 Query 363865 CATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAACACGGGAAAAGAGGAATTG 363924 ||||| || ||| | || || || || || || ||||| || || ||||| Sbjct 24147 TGGCATGCTGACATTATATCTTTCCTCGATCTTCGCAAGAACACCGGCAAGGAGGAGAAT 24088 Query 363925 CGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATTTTATGAAGCGCGTGGAG 363984 || || || || | ||||| ||||||||||| | || | || |||||||| |||||| Sbjct 24087 CGCGCGCGAGACTTATTCTACGCACTTTGGGTCCCAGATCTCTTCATGAAGCGTGTGGAG 24028 Query 363985 GCAGGTAAGAATTGGTCACTCTTTTGCCCACACGAATGTCCAGGTCTTTCCGATGTATGG 364044 | | | | ||||| ||||| ||||| ||||| | ||| ||| | || || ||| Sbjct 24027 GAAAATGGTGACTGGTCCCTCTTCTGCCCCAACGAAGCTAAAGGACTTGCTGAGGTCTGG 23968 Query 364045 GGTGACGACTATGTTGCTCTATACGAAAAGTATGAAT---CGGAGGGAAAGGCTCGTAAG 364101 || || | | | | | ||| ||||||||| | ||||| ||| | ||| Sbjct 23967 GGAGAACAATTCGAGGAGTTGTACACCAAGTATGAACAAACTGAGGGCTTGGCCAGGAAG 23908 Query 364102 ACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAACA 364161 ||||| || || | | |||||||||||| | || | || || ||||| || | Sbjct 23907 ACAATGAAGGCCCAAGATTTGTGGTTTGCCATCCTCGAGGCTCAAATAGAGACCGGTAAT 23848 Query 364162 CCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGTACA 364221 || || ||| ||||||| || ||| |||| | ||||| || ||||| ||||||| || Sbjct 23847 CCGTACATGCTGTACAAGGACTCGGCCAACAGGAAGTCGAATCAGCAAAACCTTGGGACC 23788 Query 364222 ATTCAGCAGAGCAACCTATGTACCGAGATTATTGAATACACCGCTCCCGACGAGACTGCC 364281 || |||||||| || || ||||| || ||||||||||| || |||||| ||| Sbjct 23787 ATCTCTTGTAGCAACCTCTGCACAGAGATAATCGAATACACCGCGCCAGACGAGGTTGCT 23728 Query 364282 GTATGTAACCTTGCGTCGATCGCGCTTCCGGCGTTTGTAAAAGATGGTACTTTTGACCAC 364341 || || ||||||||||| || ||||| || ||| || | |||| || || ||||| Sbjct 23727 GTGTGCAACCTTGCGTCTATTGCGCTACCTAAGTTCGTCGAGAATGGGACGTTCAACCAC 23668 Query 364342 CAGCATCTTTATGACGTAACCTATCATGCTACTTGCAATCTCGACAAGGTTATCGACAAG 364401 ||| | |||| || | ||| | | || |||| ||| ||||| ||||||| Sbjct 23667 CAGAAGCTTTTCGAAATCACCAAGGTTATCACGCGCAACCTCAACAAGATTATCGATGGC 23608 Query 364402 AATTATTATCCAATTCCTGAAGC-CG-AGCGTTCTAATATGCGTCATCGCCCGATTGGT 364458 || || || ||| ||||||| || || | | || || ||||| || || || |||||| Sbjct 23607 AACTACTACCCAGTTCCTGAGGCTCGTAAC--TCCAACATGCGCCACCGTCCCATTGGT 23551 >seq615 Length=75640 Score = 96.9 bits (106), Expect = 9e-15 Identities = 314/469 (67%), Gaps = 29/469 (6%) Strand=Plus/Minus Query 145293 TTTTTATCGGTTCGCACTTTGATAAAACGAGGAAAACGAAGAGCAATACCCTTATTTGGG 145352 || ||||| ||| | ||| | ||||| || |||||||| ||||| || || || Sbjct 62502 TTCTTATCCTCTCGAATTTTCAGGAAACGCGGGAAACGAAGCGCAATCCCTTTGGCCGGA 62443 Query 145353 TCAACGATTCCATGTCCTGCCA-TGTGAACCGGAGAAATTGACAAATCTGCCGACAATAC 145411 ||||| |||||| ||| ||| |||| ||||||||||| || | ||| || | ||| || Sbjct 62442 TCAACTATTCCA-GTCGCACCACTGTGGACCGGAGAAATGGAAAGATCGGCGGCCAACAC 62384 Query 145412 TTCCCATACTTGAGTTGGACTAAACCAAACATCTGG-TTTAAGCGATGGTACATCTGCGA 145470 |||||||||||| | || || |||||| ||||| |||||| || | ||| || || Sbjct 62383 TTCCCATACTTGTGCGGGTTCAAGCCAAACGTCTGGTTTTAAGGTATCGGACA-CT-CG- 62327 Query 145471 CATAGTAATCA-GACGGTTTCTGT-GGTACAATATGTGGCGTAAGACTGTCGGACAATTG 145528 ||||| | ||||| ||| | || | | | ||| || || | | Sbjct 62326 ----GTAATAAGGACGGGGGTTGTCGATAGCA-AACTTCTTTAACTCT-TCTGTGTGCTT 62273 Query 145529 AATTAAATCTTCATCTGAAAATCCAGTTCCGATCTTGCATACACTTTGGAACACTTCTTC 145588 |||||| || || |||||| ||||| ||| |||| || ||||| | |||| | Sbjct 62272 TGCTAAATCCTCGTCACTAAATCCCGTTCCAATC-TGCAAACGGTTTGGTATTCTTCGTT 62214 Query 145589 GTCTGGATCATACACCGCAAGAAGGTATGCACCATATACACCAGTACGTTTTCCGCGACC 145648 ||| |||||| || | ||| | || ||||||| ||||| || ||||| ||| Sbjct 62213 GTCGTCATCATAGCATGCCAATAGGAAAGCTCCATATAAGCCAGTTCGCTTTCCTTTACC 62154 Query 145649 GGTATACC---CCGCAATTGGTACAAGATC-AC---AACTATCACCCATTCCGGCAAGAT 145701 ||||| | ||||| || || | ||| || | | | | || ||| ||| | Sbjct 62153 ---ATACCATGCAGCAATCGGAACGATATCTACTGTATCCGTAAGCCCTTC---TAAG-T 62101 Query 145702 AATCCTTTTTAAGTTTTAGCCAATTGAGAGAACGTTTCGATGGTTCATA 145750 ||||||| |||| || ||||||||| |||||| || || ||||| || Sbjct 62100 AATCCTTCTTAATCTTGAGCCAATTGTAAGAACGCTTGGAAGGTTCGTA 62052 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1302189881595234