Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physarum_20polycephalum_20[genbank_20GCA_5F000413255.3_202014-06-30] 69,687 sequences; 205,175,886 total letters Query= NC_007497.1 Length=44856 Score E Sequences producing significant alignments: (Bits) Value seq2996 363 4e-96 seq6053 215 1e-51 seq1282 116 1e-21 >seq2996 Length=8617 Score = 363 bits (402), Expect = 4e-96 Identities = 1185/1826 (65%), Gaps = 104/1826 (6%) Strand=Plus/Plus Query 42666 GCGGATTGAGCGCCATGAGCGAGACTGCGTTAAACAGCGCCATCAGCGGGTCGATCTTGG 42725 |||| ||||| || | ||| || |||||||| || |||||||||||||||||||||| Sbjct 5778 GCGGGTTGAGGCTGATCAACGACACGGCGTTAAAAAGTGCCATCAGCGGGTCGATCTTGG 5837 Query 42726 CGGTCCCGCTCACCTGCTTGGTGATGTTCACTGCGTTCCCGACCGGAACGACTCGCGCAT 42785 | | ||||| |||| || || || | ||| || ||| ||| |||| ||||||| Sbjct 5838 CCGATCCGCTTGCCTGTTTCGTAATCAGGATTGCATTGCCGCGCGGCTCGACGCGCGCAT 5897 Query 42786 TTCCAACTGCCCACGTCAACAGTGGTTGGCCGCCGTGATACAACGCCCCGTCAGGGGCTT 42845 | || || ||| | || || ||||||||||||| || ||| Sbjct 5898 TGCCGACGCACCAGGCCATCATGCGTTGGCCGCCGTGCAGCAGCGC-------------- 5943 Query 42846 CGTCGCCTTCGATACGCTGCCCCGACGCCGCCGCGATGCGGCGTTCCGTCGTCTTGATGG 42905 ||| ||| ||||| | ||| || ||||||||||| | Sbjct 5944 ----GCCCTCG---------------------GCGATCCTGCGCTCGGTCGTCTTGATTG 5978 Query 42906 CTCCCGAGAGCTTCCAGCCTTGCGAGATACCAATCACCTTGTCTTCCGGAACCCGCGCTG 42965 | ||| |||||||||||| ||||| || || ||||||||||| || ||||| | || Sbjct 5979 CACCCCCGAGCTTCCAGCCCTGCGAAATGCCGATCACCTTGTCCTCTGGAACACCAGCAT 6038 Query 42966 CCGCGAGTGCGTCGAGGATAGCCCCGATACCGGCCGGGTCGACGCCGGCCTTGTATAGAA 43025 | | || |||||||| | || ||||| |||||||||||||| ||| |||||| || | Sbjct 6039 CGACCAGCGCGTCGAGCACCGCGCCGATGCCGGCCGGGTCGACACCGACCTTGTCGAGCA 6098 Query 43026 GCCCAGCGCGCTCGATGCGAGCGACATACTCTGCCGCCTGTACAACGTCCTCGCCGATCC 43085 | || | |||| | ||| || || | | | |||||||||||||| Sbjct 6099 GACCCGACGACTCGCACTGGCTGACGAGATCCGCGACATCGGCGACGTCCTCGCCGATGT 6158 Query 43086 GAGAGACGATCGTCAGATCCCCCGCCTTCTCGAAATCGTGAA---GCGCCGG--CGCAAT 43140 | ||| | |||||| || || | | ||||||| || | |||| || | Sbjct 6159 GCTCGACCAGCGTCAGGTCGCCGTCGTCAGAAAAATCGTTAAAACGTGCCGCTTCGGA-- 6216 Query 43141 CTCTTTGCGGCGCTCCAGCACGGACGGGTGCGCCCAAGNNNNNNNNNNNNNNNNCCAGTT 43200 |||| || ||||| ||||||||||| |||||||| | |||||| Sbjct 6217 --CTTT-CGCCGCTCGAGCACGGACGGATGCGCCCAGGCATGCGACCACGCTAGCCAGTT 6273 Query 43201 CC----GCCCACCTCTTACGCGGCCCACCGCACTGAGCCCCAATAAGTCGTCAAGGCCGC 43256 | ||| |||| || |||||| || | ||| | | ||| || ||||||| Sbjct 6274 GCCGGTGCCGCGCTCT----CGACCCACCACAGCAAACCCGAGCAGGTCATCGAGGCCGC 6329 Query 43257 CGCCATCGATACCAGCGGCGATCACCTCACATTGTTCGATCAGGTCGAGAAGCGTCACGC 43316 |||| || || ||| || ||| |||||| || | | | ||| ||| ||||| ||| Sbjct 6330 CGCCGTCAATCCCAACGTCGACCACCTCGCAGCGCGCAAGCAGTTCGTCTAGCGTG-CGC 6388 Query 43317 GCTCCGGCAACCCTGCATTGATCCAGAAGTCTGCGCCGGCCCACCGGTCGGACCGGAGGT 43376 | ||| | || || ||||||||| || |||||||| || || || || || Sbjct 6389 GTCCCGCGCGCGGCGCCTTC--CCAGAAGTCCGCACCGGCCCAGCGATCCGAGCGCAGTG 6446 Query 43377 TCATGCCGATCTCGACGTTGAGGTGCTTCGCGATGAA-CTGCTGGAACGA---TCCGTCA 43432 || ||||||||||||||| |||||||| | ||| | || ||||||| | || | Sbjct 6447 CCAGGCCGATCTCGACGTTCGCATGCTTCGCAAGGAAGCCGC-GGAACGACTCTTCGCCC 6505 Query 43433 GTCTTGGTGCGGATCTTGTTGAGCTGGTCCTCCAGCCATTCGGCACTGACCGACCGC--- 43489 || || | || |||| | || | ||| || || || | ||| |||| | Sbjct 6506 GT-TTCCTTCGC--CTTGCGAAACTCGCGCTCGAG--ATACGCC--TGATCGACGGAAAA 6558 Query 43490 -CCGAGATTCGGATTCGTGATGTAGTAGTTGGCCGGATCGAGGTAGGCTTTCGACTTCAC 43548 |||| ||||| || || | ||| | | |||| | || | Sbjct 6559 TCCGAAGTTCGGGTTGACCATCGCGAGGTTTTCGACCTTCAGGTGCTCCTTGCTGGCGAT 6618 Query 43549 CATCTCTTCCGGAAACTCGTACAGCACGCCGAGCGACTTCCGG-TCGACGATTTTGCCGT 43607 ||| || |||| |||| | | ||| | | ||| ||| ||||| || ||||||| Sbjct 6619 CATTTCGGGCGGATGCTCGAAGATCAC-CGGCACGAAGCACGGGTCGACAATCTTGCCGT 6677 Query 43608 CACGCACGTCGCGGTAGTACTGCAACTTCTCTTTGAACACACCGGCCGGCGGCTCGTCGC 43667 | ||||||||||| ||| | | ||| | |||||||| || ||||| |||| Sbjct 6678 CGCGCACGTCGCGCGCGTATCGAAGCTTTTGCAGAAACACACCTGCAGGCGGGTCGTTCG 6737 Query 43668 TTTGCGTTGTCAGGATGATGACCCACCCTTCATCCCGCGACACCTGGCCTCCGGTCGCCT 43727 ||||| |||||| ||||| | ||||| ||||| || | || |||||||||| Sbjct 6738 ACTGCGTCGTCAGGTATATGACGAAGCCTTCCGGGCGCGAAGCCAGACCACCGGTCGCCT 6797 Query 43728 CCATGAACATCGCTTCTGCGTTCGCCCTCTTGCCGAAGACCCAGTGCTCGTCGATAAGAA 43787 | | ||| | || || | || | |||||||| | ||| |||||||||| || Sbjct 6798 CGCGCAGCATGTCCTCAGCATCCGGCTGTTTGCCGAAAAGCCACAGCTCGTCGATCAG-- 6855 Query 43788 TCTTTCCTGAC----TTCTTGCCCGATACCGTGTCAGTGTCGGCCGCAACCACCTTCAAC 43843 | | || ||| ||||| || || ||||||| | || ||||| || ||||||| | Sbjct 6856 -CGTGCC-GACGCTCTTCTTACCGGAAACCGTGTTCGAATCAGCCGCGACGACCTTCAGC 6913 Query 43844 GACGCTCGACTGACGCGGTGCGTTATCGTGCGGATGTGATCTTGGACATGAAACAGCTCG 43903 ||| | || ||||||||| ||||| |||||| | || || || || || ||| Sbjct 6914 ATCGCGCCGCTCGTGCGGTGCGTGATCGTCTTGATGTGTGCCTGCACCTGGAAGAGGTCG 6973 Query 43904 GACAGCTCTGCATCGGCCCGGATCATCCCCGCCGC-CGGTTTGAAGCTGTTGTCCGCGAC 43962 ||||| | ||| | | ||| | || | ||| ||||||||| | ||||| Sbjct 6974 TCGAGCTCGTCCTCGTGCTTCACCATGTC-GCGACTCGGCGCGAAGCTGTTATTGGCGAC 7032 Query 43963 CTCCTTCGTCGGGGCGAGAATCAGGTGCTCTTCTTCCTCGCGCCAACACAAAATGACCGC 44022 ||| |||| || ||||||||| || || | | ||||||| || || | || Sbjct 7033 CTCGATCGTTGGCGCGAGAATCGCGTATTCCGCCGACATGCGCCAATTCAGGATCATGGC 7092 Query 44023 CGTCAGCATGATTCCGGCCGCGATCGTCGATTTCGTATTCTTCTTGCTGATCAGCAGA-- 44080 ||||| ||||||||| || || | ||||||||| | ||||||||| ||| ||||| Sbjct 7093 CGTCATCATGATTCCTGCGGCCAGCGTCGATTTGCTGTTCTTCTTGGGGAT--GCAGACG 7150 Query 44081 AAGAACTCGCGGATCAGTTGCTTGCCGGTTTCGGCATCGTAGGCACCGAAAATGGCCGCG 44140 || |||| |||||| | ||| | || || ||||| || ||||| || | |||| Sbjct 7151 AACCACTCTGTGATCAGGCGACGCCCGTTCTCAGCGTCGTATGCGCCGAAGATCGACGCG 7210 Query 44141 ACGAAATCGAAGACCCACTGC-TCGCTGCATTCGCCGAAGGTCGGCTTTCCCGGTAGGT- 44198 || | |||||||||||| ||| || || | |||||||| ||||| | ||||| || Sbjct 7211 ACCAGATCGAAGACCCATTGCGCCGATG-ACTCGCCGAACGTCGGGCTACCCGGCGCGTC 7269 Query 44199 CACAGACCCGCAGTTCCTTGAAGATCGCGACTGCCTGCTCAGCCTGATCCGGGAAAATCG 44258 |||| | | || ||||||||| | || | |||||||| ||||| || ||||| || | Sbjct 7270 CACA-ATCTTCAATTCCTTGAACACAGCAAGCGCCTGCTCTGCCTGCTCGGGGAAGATTG 7328 Query 44259 GCGGCGGAATGATCGACTCGCGCGCAATCAGCCGCCTTTCCCAGTCGGGACATGCCGTTG 44318 |||| |||||||||||| | || | ||||| |||| |||||||| || || | Sbjct 7329 GCGGTGGAATGATCGACCGCCCCGTCTTGAGCCGTTCGGCCCAATCGGGACAAGCAGTCG 7388 Query 44319 TCCACTCCATCACTCGACCTTCTTGCCGCCGTTGGCGATCAACCGCGGCGGTGCCGCCGG 44378 ||| ||||| | || || | | |||| | | | | |||| || || || Sbjct 7389 ACCATTCCAT------GCGTTATTTC--CTGTTGACCAGCTTCAGCGGTGGCGCGAGCGC 7440 Query 44379 AGCAAACCGGCTTGCCGCCTTCTTCGCAGCTTCGTCACGCTGTTCCTTCTTGCCGCCCTC 44438 | | ||| ||| || || |||| ||| ||| | ||| ||||| || ||||| || Sbjct 7441 ACCGAACTTGCTCGCAGCTTTCTGCGCCCGGTCGGCCTGCTCATCCTTTTTCCCGCCTTC 7500 Query 44439 GCCCAGCCGCTTGTGGACGAAAGGCA 44464 |||| || || || |||||||| Sbjct 7501 GCCCTTCCTGGCGTAGAGGAAAGGCA 7526 >seq6053 Length=3316 Score = 215 bits (238), Expect = 1e-51 Identities = 499/742 (67%), Gaps = 44/742 (6%) Strand=Plus/Plus Query 604 CCAGAACAGCCA--TGCGAACTCCGGAGCGGAAACGAAAAAGCCCGCGAGGCTTTCACCT 661 ||| |||||| | |||||| | | | || ||||||||||||||| | |||| || Sbjct 925 CCACAACAGCAAACTGCGAAACCAGCAACGCCAACGAAAAAGCCCGCTGGCTTTTCGGCT 984 Query 662 -AGCGGGCTCTGGACGCACTGATCACGTGTATCGAATGT-GTGTGATTATTGTGGGTCAA 719 |||||||| ||| ||||| || ||||||||||||| ||| |||||||||| || Sbjct 985 CAGCGGGCTTTGGTCGCACGTATGACGTGTATCGAATACAGTG-GATTATTGTGCACGAA 1043 Query 720 ACACACATTGTCAAGCAATCTCGCAATTTTTTAGCAGTCCTGCGGTCGATAGCTTGC-GC 778 | ||| ||||||| || || | | | |||| || | ||| | || || Sbjct 1044 ATGCACCGCGTCAAGCCGTCACGGCAGTCTCCAGCAATCGAA-GTTCGCCAAAACGCCGC 1102 Query 779 TCGATTGCAGCCCATGCGGCATCGATCACGCCGA---------------CGGCGCC---- 819 || ||||||||||| ||| | || ||||| || ||| Sbjct 1103 TCCATTGCAGCCCACGCGACCTCTTCGACGCCTTTTTCCTCGCTTTTCTCGTTGCCTTTC 1162 Query 820 ----CGTCT-TGCTGTTTCCTTCGAGCCACTTCCGAACCGCGGCGTTCTGCTTGCTGACC 874 || || | ||| | || |||| |||| | || || || | ||||| |||||| Sbjct 1163 CGGCCGGCTCTCCTGCTGCCCTCGATCCACCTGCGTACTGCTGAATTCTGGGCACTGACC 1222 Query 875 GTGTTCACGTGCGCGTCGCAATCCTCTGCCACGTCAGCCAGGCTG---CGCT------TC 925 |||||| ||| || |||| || || || | ||| |||||| |||| || Sbjct 1223 GTGTTCCGGTGAGCACCGCACTCGTCAGCGATGTCGTTCAGGCTCTTCCGCTGCTTTTTC 1282 Query 926 ACCCCGAAGACGCCTTCGATGATCGCGCGCCGTACGCGGTAATGGCTGAAGCCCGAGCAG 985 | ||||| | |||||||||| || || ||||||||||| ||||||||| | Sbjct 1283 GCGGTGAAGATGTTCTCGATGATCGTACGGCGCACGCGGTAATGCGAGAAGCCCGACACG 1342 Query 986 TACGCGGCCGACGCATCCGTGAGCCAGCTGATAGCCGCATCCCATTCCGGGTTCGGCTGG 1045 |||||| ||||| || || |||||| |||| ||||| ||| ||| |||||| || Sbjct 1343 AACGCGGTGGACGCCTCGGTAAGCCAGGTGATTGCCGCGCGCCACTCCTCGTTCGGACGG 1402 Query 1046 CTGCCAGAA-CAGCACGACTTGCCACACGAGCACGGCAGGTCACGAGGGGCAGCGCGCGC 1104 | || | ||||| | | ||| || |||||| ||| | || || | || || Sbjct 1403 C-GCTTGCTGCAGCATGGCCGGCCGCAGCTGCACGGGGTGTCGTGCGGTGCTGTTCGGGC 1461 Query 1105 GATGATCACTGCACGGTGAAGCTCCGGCAGCTCCCACACCT-TCGCGCGGATCATGCCGG 1163 ||| | ||| || | || || || ||||||||||||| | ||| ||||||| |||| Sbjct 1462 GATCAGCACCGCGAGATGCAGATCAGGCAGCTCCCACATTTCTCG-GCGGATCTGACCGG 1520 Query 1164 CCTGCCCAGCACCATCGACCCCGACGAGGCCCATCCCCGATCCGAGCGATTCACCCCGCA 1223 ||| || ||||| || | ||||||||| ||||| ||| ||| ||| || ||| || Sbjct 1521 ACTGGCCCGCACCGTCCAGCCCGACGAGCCCCATGCCCTTCTCGACCGACTCGCCCTTCA 1580 Query 1224 GGCGCTTCGCCATCATCGTTTCGCCGTACTGCTGCGTCGAGTACGCCAGCGCGAACCGCA 1283 | ||||| ||||||||||||||||| || ||||||||||| || |||||||| |||| Sbjct 1581 GTCGCTTGGCCATCATCGTTTCGCCATATTGCTGCGTCGAATAGCAAAGCGCGAATCGCA 1640 Query 1284 CTGCATCAAATGCCGACTTGAA 1305 | || || || || |||||| Sbjct 1641 CCGCGTCGAACGCGCTCTTGAA 1662 >seq1282 Length=26080 Score = 116 bits (128), Expect = 1e-21 Identities = 181/257 (70%), Gaps = 4/257 (2%) Strand=Plus/Plus Query 3503 CGGGTATTGATCCGCCGCGACCTTCACCTTCACGCGCGCGTCGTCTTGCC--AATGCCCC 3560 ||||||||| |||||| ||| | ||||||| |||||| || | | ||| ||| Sbjct 22995 CGGGTATTGCGAAGCCGCGCTCTTGATCTTCACGTTCGCGTCTTCCTCCATGAAT--CCC 23052 Query 3561 TTCACCTCGTGCGCCTCGAGCTGGCCGTTCGCGAGCATCACCGTGAAATCGGGCGTGTAG 3620 || ||||||| |||||| |||| |||||| ||||||| ||| |||||||||||| Sbjct 23053 TTGCACTCGTGCAGTTCGAGCGCGCCGCTCGCGACGATCACCGCGAAGTCGGGCGTGTAG 23112 Query 3621 AACGTGTTGTCGGCGAGACGGAACTTGATGCCCTCGAATCGATACCAGACGATTTCGCCG 3680 |||||| ||| || || ||||| || | || ||||| ||| |||| | || ||||| Sbjct 23113 AACGTGCGGTCAGCAAGCCGGAATTTCAGACCTTCGAAGCGAAACCACAGGACGTCGCCC 23172 Query 3681 GCCTGCTTCCGCGCCTCCAGATGGTCGGCGTAGCGCTGCTCGGTCTTGTTCATCGCGCCG 3740 | || | || || || ||| ||||||| |||| || | |||||||| ||| Sbjct 23173 CCATGTCGCAGCATGTCGAGGTGGGCGGCGTAACGCTTTTCCAGCCCGTTCATCGTTCCG 23232 Query 3741 GCCTTCAGTCGACCGAG 3757 | || |||||||| Sbjct 23233 CCACCAAGGCGACCGAG 23249 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143298917185292