Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physarum_20polycephalum_20[genbank_20GCA_5F000413255.3_202014-06-30] 69,687 sequences; 205,175,886 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq2782 120 2e-22 seq22 116 2e-21 seq311 113 3e-20 seq30454 98.7 7e-16 seq2575 95.1 8e-15 seq146 89.7 3e-13 seq66879 82.4 5e-11 >seq2782 Length=10868 Score = 120 bits (132), Expect = 2e-22 Identities = 150/206 (73%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 38108 CACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTC 38167 |||||| ||||| ||| ||| || ||||| ||||||||||| | |||| |||| || Sbjct 9161 CACCAAGTGAAGGGTGGACTCTTTCTGAATGTTGTAATCAGAAAGGGTACGTCCGTCCTC 9220 Query 38168 TAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCAT 38227 || ||| ||||| ||||| || ||||||||||| || | ||||| ||||| |||||| Sbjct 9221 TAGTTGCTTTCCAGCAAAGATGAGGCGTTGTTGGTCAGGGGGGATTCCTTCCTTGTCCTG 9280 Query 38228 AATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTT 38287 || || ||| || || || ||||| || || || || || ||||| || || Sbjct 9281 GATCTTAGTCTTTACGGACTCGATGGTATCAGAGCTCTCGACCTCCAAGGTAATTGTCTT 9340 Query 38288 ACCCGTCAAGGTTTTCACGAATATCT 38313 ||| || | ||| || ||||| |||| Sbjct 9341 ACCAGTGAGGGTCTTGACGAAAATCT 9366 Score = 111 bits (122), Expect = 1e-19 Identities = 163/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 ||||| | | ||| | |||||| ||||| ||| |||||| || || ||||||||||| Sbjct 9764 CCACCACGTAGACGGAGCACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAATCAGAG 9823 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 | |||| | || |||| ||| || |||||||| || || |||||||| || | ||| Sbjct 9824 AGGGTACGTCCATCCTCTAGTTGCTTGCCGGCAAAGATAAGACGTTGTTGGTCAGGGGGA 9883 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | ||||| |||||| || || |||||| || || || ||| || || || Sbjct 9884 ATTCCTTCCTTGTCCTGGATCTTGGTCTTCACGGACTCGATGGTGTCTGAGCTCTCCACC 9943 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTTT 38321 || | || || || || || || | || |||||||| ||||||||| || Sbjct 9944 TCGAGGGTGATGGTCTTGCCAGTGAGTGTCTTCACGAAGATCTGCATGCTT 9994 >seq22 Length=338851 Score = 116 bits (128), Expect = 2e-21 Identities = 150/207 (72%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 38108 CACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTC 38167 |||||| || | |||||||||||||| || ||||| || || | ||| |||| || Sbjct 330912 CACCAAGTGCAAGGTGCTCTCCTTTTGGATGTTGTAGTCGGAGAGGGTGCGTCCGTCCTC 330971 Query 38168 TAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCAT 38227 | || |||||||| || || | ||||||||| || | ||||| ||||| |||||| Sbjct 330972 GAGCTGCTTTCCGGCGAAGATCAAGCGTTGTTGGTCAGGGGGGATTCCTTCCTTGTCCTG 331031 Query 38228 AATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTT 38287 || || ||||||| ||| || ||||| || || ||||| | || || || || Sbjct 331032 GATCTTGGTCTTCACACTCTCGATGGTATCGGAGCTCTCTACTTCGAGGGTGATGGTCTT 331091 Query 38288 ACCCGTCAAGGTTTTCACGAATATCTG 38314 || |||||||| |||||||| ||||| Sbjct 331092 GCCAGTCAAGGTCTTCACGAAGATCTG 331118 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 38108 CACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTC 38167 |||||| || | ||| |||||||||||||||||| || || | ||| | || || Sbjct 331320 CACCAAGTGCAAGGTGGACTCCTTTTGAATATTGTAGTCGGAGAGGGTGCGTCCATCCTC 331379 Query 38168 TAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCAT 38227 | ||| |||||||| || || ||||||||||| || | ||||| ||||| ||||| Sbjct 331380 GAGTTGCTTTCCGGCGAAGATAAGGCGTTGTTGGTCAGGGGGGATTCCTTCCTTGTCTTG 331439 Query 38228 AATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTT 38287 || ||| |||||| ||| || ||||| || || || || || || || || || Sbjct 331440 GATCTTTGTCTTCACGCTCTCGATGGTATCAGAGCTCTCGACCTCCAAGGTGATGGTCTT 331499 Query 38288 ACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || || | ||| || ||||| || ||||| Sbjct 331500 TCCGGTGAGGGTCTTGACGAAGATTTGCAT 331529 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 38108 CACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTC 38167 |||||| || || ||| |||||| || || ||||| || ||| ||| | || || Sbjct 331548 CACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTCAAGGTGCGTCCATCCTC 331607 Query 38168 TAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCAT 38227 | || ||||||||||| || | || ||||| |||| ||||| ||| || ||||| Sbjct 331608 AAGCTGCTTTCCGGCAAAGATCAAACGCTGTTGGTCGGGGGGGATGCCCTCCTTGTCTTG 331667 Query 38228 AATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTT 38287 || || |||||| ||| || ||||| || || || ||||| || || || || Sbjct 331668 GATCTTGGTCTTCACGCTCTCGATGGTATCAGAGCTCTCGACCTCTAAAGTGATGGTCTT 331727 Query 38288 ACCCGTCAAGGTTTTCACGAATATCTGCA 38316 || |||||||| || ||||| |||| || Sbjct 331728 TCCGGTCAAGGTCTTGACGAAAATCTACA 331756 >seq311 Length=120508 Score = 113 bits (124), Expect = 3e-20 Identities = 77/87 (89%), Gaps = 5/87 (6%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||| ||||| || |||||| | Sbjct 113803 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGGTAGGGACAGTGGGAATCTCAT 113744 Query 25957 TAATCCTTTCATGCGCGTCACTAATTA 25983 |||||| |||||||||||||| ||||| Sbjct 113743 TAATCCATTCATGCGCGTCACAAATTA 113717 Score = 113 bits (124), Expect = 3e-20 Identities = 77/87 (89%), Gaps = 5/87 (6%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||| ||||| || |||||| | Sbjct 115843 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGGTAGGGACAGTGGGAATCTCAT 115784 Query 25957 TAATCCTTTCATGCGCGTCACTAATTA 25983 |||||| |||||||||||||| ||||| Sbjct 115783 TAATCCATTCATGCGCGTCACAAATTA 115757 >seq30454 Length=461 Score = 98.7 bits (108), Expect = 7e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 38108 CACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTC 38167 |||||| ||||| ||| |||||||||||||||||| || || | ||| | || || Sbjct 31 CACCAAGTGAAGGGTGGACTCCTTTTGAATATTGTAGTCGGAGAGGGTGCGTCCATCCTC 90 Query 38168 TAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCAT 38227 | || || || ||||| || | |||||||| || | ||| | ||||| |||||| Sbjct 91 GAGCTGCTTGCCAGCAAAGATCAAACGTTGTTGGTCAGGGGGAATTCCTTCCTTGTCCTG 150 Query 38228 AATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTT 38287 ||| || ||| || || || ||| || || ||||| || | |||||||| || Sbjct 151 AATCTTGGTCTTTACTGACTCGATAGTGTCAGAGCTCTCAACCTCAAGGGTAATAGTCTT 210 Query 38288 ACCCGTCAAGGTTTTCACGAATATCTGCA 38316 ||| || | ||| || ||||| |||| || Sbjct 211 ACCAGTGAGGGTCTTGACGAAGATCTACA 239 >seq2575 Length=10330 Score = 95.1 bits (104), Expect = 8e-15 Identities = 78/95 (82%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||| ||||||||||| |||| |||||||||||||||| | ||| || |||||| | Sbjct 2772 AAGTCCGTTCCCTTGACTGTCGTTTCGCTAGATAGTAACTCGGGACAGAGGGAATCTCAT 2831 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||| |||||| || ||||| Sbjct 2832 TAATCCATTCATGCGCGTCTCTAATTGGAAGACGA 2866 >seq146 Length=178297 Score = 89.7 bits (98), Expect = 3e-13 Identities = 144/207 (70%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 38108 CACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTC 38167 |||||| || || ||| |||||||||||| ||||| || || | ||| | || || Sbjct 157379 CACCAAGTGGAGGGTGGACTCCTTTTGAATGTTGTAGTCGGAGAGGGTGCGTCCATCCTC 157438 Query 38168 TAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCAT 38227 | ||| |||||||| || || ||||||||||| || | ||| | || || ||||| Sbjct 157439 GAGTTGCTTTCCGGCGAAGATGAGGCGTTGTTGGTCAGGGGGAATTCCCTCCTTGTCTTG 157498 Query 38228 AATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTT 38287 ||| || ||| || ||| | || || || || ||||| | |||||||| || Sbjct 157499 AATCTTAGTCTTTACGCTCTCAATGGTGTCAGAGCTCTCGACTTCGAGAGTAATAGTCTT 157558 Query 38288 ACCCGTCAAGGTTTTCACGAATATCTG 38314 || || | ||| || ||||| ||||| Sbjct 157559 GCCAGTGAGGGTCTTAACGAAGATCTG 157585 >seq66879 Length=210 Score = 82.4 bits (90), Expect = 5e-11 Identities = 105/145 (72%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 |||| |||||||| || | || | || || |||||||||||||| || ||||| || Sbjct 65 TACCTCCTCTCAAGCGGAGGACAAGGTGCAGTGTGCTCTCCTTTTGGATGTTGTAGTCGC 124 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 |||| || | || || || || ||||| || || || | || ||||| || | || Sbjct 125 TCAAAGTGCGACCATCCTCCAACTGCTTTCCAGCGAAGATCAAACGCTGTTGGTCAGGGG 184 Query 38209 GGACGCCTTCTTTGTCCATAATTTT 38233 ||| |||||||||||| |||||| Sbjct 185 GGATTCCTTCTTTGTCCTGAATTTT 209 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334662725888897