Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physarum_20polycephalum_20[genbank_20GCA_5F000413255.3_202014-06-30] 69,687 sequences; 205,175,886 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq612 107 2e-18 seq1429 104 3e-17 >seq612 Length=73199 Score = 107 bits (118), Expect = 2e-18 Identities = 297/455 (65%), Gaps = 3/455 (1%) Strand=Plus/Plus Query 62747 GCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCA 62806 |||| ||| || || || || || || ||||| | | | | |||| |||||||| Sbjct 23705 GCAATAGACGCAAGGTTGCACACAGCAACCTCGTCTGGCGCGGTGTATTCGATTATCTCT 23764 Query 62807 GTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACAC 62866 ||||| || || ||||| |||||| || | ||||| ||||| ||| |||| | Sbjct 23765 GTGCAGAGGTTGCTACAAGAGATGGTCCCAAGGTTTTGCTGATTCGACTTCCTGTTGGCC 23824 Query 62867 GCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTC 62926 | ||||| || || ||| | ||| |||| || || || |||| || | || || | Sbjct 23825 GAGTCCTTGTACAGCATGTACGGATTACCGGTCTCTATTTGAGCCTCGAGGATGGCAAAC 23884 Query 62927 CAGACGACTCGAGCCTTTATTATAGATTTGT---ATCTCTTTTCTCTTTCGTATAGTGTA 62983 || | || | ||||| ||| | || | | || | ||| || || Sbjct 23885 CACAAATCTTGGGCCTTCATTGTCTTCCTGGCCAAGCCCTCAGTTTGTTCATACTTGGTG 23944 Query 62984 TACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAGTCCAGGACATTCATCCGGACAC 63043 ||||| ||||| | |||||||| || | | ||||| | ||| | || || Sbjct 23945 TACAACTCCTCGAATTGTTCTCCCCAGACCTCAGCAAGTCCTTTAGCTTCGTTGGGGCAG 24004 Query 63044 ATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGA 63103 | | ||||| || || | |||| ||| || ||||| |||||||| || | |||||| Sbjct 24005 AAGAGGGACCAGTCACCATTTTCCTCCACACGCTTCATGAAGAGATCTGGGACCCAAAGT 24064 Query 63104 GCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGG 63163 || |||| |||| | | || ||||| || || || ||||| |||||||||| Sbjct 24065 GCGTAGAATAAGTCTCGCGCGCGATTCTCCTCCTTGCCGGTGTTCTTGCGAAGATCGAGG 24124 Query 63164 AACGCCATAATATCAGAATGCCACGGTTCCAAGTA 63198 || | ||||| |||| |||||| ||||||| ||| Sbjct 24125 AAAGATATAATGTCAGCATGCCAGGGTTCCAGGTA 24159 >seq1429 Length=23345 Score = 104 bits (114), Expect = 3e-17 Identities = 127/171 (74%), Gaps = 3/171 (2%) Strand=Plus/Plus Query 32781 ATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCATGTATC 32840 || || ||||| || ||||| || | ||||||||| || || | | || | |||||| Sbjct 7528 ATACCCTCTACCGCTGCAAATGCTACAAGTCTCTCAGCA-AAGCTTCCCTCT--TGTATC 7584 Query 32841 CACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAG 32900 ||| | | |||||||| |||||||| || |||||||| |||||||| |||||||| || Sbjct 7585 CACCTCAGTGCCCAATCAGCCTTCTTCTTCACACAAGGGATTGTCTCAATAGCATTGAAC 7644 Query 32901 AGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTA 32951 || || |||||| | | ||| | ||||| || |||||||||||| Sbjct 7645 AGTCTGTCTTTTTCTTGTGGGTTTTTGATGTATGTGTCGATCAAAAGACTA 7695 Score = 91.5 bits (100), Expect = 2e-13 Identities = 99/129 (77%), Gaps = 2/129 (2%) Strand=Plus/Minus Query 32958 TCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCTCGGTAATC 33017 || || ||||| || |||||||| ||||| ||||| || ||||| | |||||| | ||| Sbjct 7476 TCGGAGTGAATATTCTCAATGGCGATTTGGAATCCATAAAAGCAGCGAGCCTCAGGGATC 7417 Query 33018 TGTACTTCTGTACA-AAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGC 33076 ||||||||| | || || || ||| | || |||||||| ||||| |||||||| || Sbjct 7416 TGTACTTCT-TGCATGAAACGAGTTGCAAGGTTCTCATTCACAATTCCATCACTGGCAGC 7358 Query 33077 AAAAAACGC 33085 ||| || || Sbjct 7357 AAAGAAAGC 7349 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633080051085200