Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physarum_20polycephalum_20[genbank_20GCA_5F000413255.3_202014-06-30] 69,687 sequences; 205,175,886 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq2782 131 1e-25 seq22 127 2e-24 seq30454 118 9e-22 seq146 105 6e-18 seq59190 91.5 1e-13 seq66879 86.0 5e-12 >seq2782 Length=10868 Score = 131 bits (144), Expect = 1e-25 Identities = 156/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| | || || || ||||||| |||| |||||| || Sbjct 9990 ATGCAGATCTTCGTGAAGACACTCACTGGCAAGACCATCACCCTCGAGGTGGAGAGCTCA 9931 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| |||||||| ||||| || ||| ||||| ||||| ||||| ||||||||| Sbjct 9930 GACACCATCGAGTCCGTGAAGACCAAGATCCAGGACAAGGAAGGAATTCCCCCTGACCAA 9871 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 || || |||| ||||||||||| ||| |||| |||| || || | |||||||| Sbjct 9870 CAACGTCTTATCTTTGCCGGCAAGCAACTAGAGGATGGACGTACCCTCTCTGATTACAAC 9811 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || || || ||||| || || || ||||| Sbjct 9810 ATCCAGAAGGAGTCCACCCTTCACTTGGTGCT 9779 Score = 105 bits (116), Expect = 6e-18 Identities = 147/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 25005 ATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCTGACACT 25064 || || || ||||| | || |||||| |||| || | || || ||| |||||||| Sbjct 9043 ATTTTCGTCAAGACCCTCACTGGTAAAACCATTACCTTGGAGGTCGAGAGCTCTGACACC 8984 Query 25065 ATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAACAGCGG 25124 || ||||| ||||| || ||| ||||| ||||| || || ||||||||||| || Sbjct 8983 ATTGAGTCCGTGAAGACGAAGATCCAGGACAAGGAAGGAATCCCCCCTGACCAACAACGT 8924 Query 25125 ATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAATATTCAA 25184 | || ||||||||||| || | || |||| ||||| | ||| ||||| || || Sbjct 8923 TTGATCTTTGCCGGCAAGCAGCTCGAGGATGGACGCACCCTCTCCGACTACAACATCCAG 8864 Query 25185 AAAGAATCCACGCTACATTTAGTGCT 25210 || || ||||| || || || ||||| Sbjct 8863 AAGGAGTCCACCCTCCACTTGGTGCT 8838 Score = 93.3 bits (102), Expect = 4e-14 Identities = 144/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 25005 ATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCTGACACT 25064 || || || ||||| | || ||||| | || || | || || ||| ||||| || Sbjct 9364 ATTTTCGTCAAGACCCTCACTGGTAAGACAATTACCTTGGAGGTCGAGAGCTCTGATACC 9305 Query 25065 ATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAACAGCGG 25124 |||||||| | ||| || ||| ||||| ||||| || || ||||||||||| || Sbjct 9304 ATCGAGTCCGTAAAGACTAAGATCCAGGACAAGGAAGGAATCCCCCCTGACCAACAACGC 9245 Query 25125 ATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAATATTCAA 25184 | || ||||| || || ||| |||| || | || || | |||||||| ||||| Sbjct 9244 CTCATCTTTGCTGGAAAGCAACTAGAGGACGGACGTACCCTTTCTGATTACAACATTCAG 9185 Query 25185 AAAGAATCCACGCTACATTTAGTGCT 25210 ||||| ||||| || || || ||||| Sbjct 9184 AAAGAGTCCACCCTTCACTTGGTGCT 9159 >seq22 Length=338851 Score = 127 bits (140), Expect = 2e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||||| || || ||||| | ||||| || ||||||| | || || ||| || Sbjct 331530 AATGCAAATCTTCGTCAAGACCCTCACCGGAAAGACCATCACCTTGGAGGTCGAGAGCTC 331471 Query 25058 TGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||| || |||||| ||||| ||| ||| ||||| ||||| || || |||||||| Sbjct 331470 TGATACCATCGAGAGCGTGAAGACAAAGATCCAAGACAAGGAAGGAATCCCCCCTGACCA 331411 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||| || |||| || ||||| || ||| | || |||| ||||| | ||| ||||| Sbjct 331410 ACAACGCCTTATCTTCGCCGGAAAGCAACTCGAGGATGGACGCACCCTCTCCGACTACAA 331351 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 ||||||||| || ||||| | || || ||||| | || | ||||||| Sbjct 331350 TATTCAAAAGGAGTCCACCTTGCACTTGGTGCTTCGCCTTCGCGGAGGAA 331301 Score = 105 bits (116), Expect = 6e-18 Identities = 147/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 25005 ATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCTGACACT 25064 || || || ||||| |||||||| || ||||||| | || || ||| ||||| || Sbjct 331751 ATTTTCGTCAAGACCTTGACCGGAAAGACCATCACTTTAGAGGTCGAGAGCTCTGATACC 331692 Query 25065 ATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAACAGCGG 25124 |||||| ||||| || ||| ||||| || || || || || ||||||||||| Sbjct 331691 ATCGAGAGCGTGAAGACCAAGATCCAAGACAAGGAGGGCATCCCCCCCGACCAACAGCGT 331632 Query 25125 ATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAATATTCAA 25184 | || |||||||| || || | || |||| ||||| || |||| ||||| || || Sbjct 331631 TTGATCTTTGCCGGAAAGCAGCTTGAGGATGGACGCACCTTGAGCGACTACAACATCCAG 331572 Query 25185 AAAGAATCCACGCTACATTTAGTGCT 25210 || || ||||| || || || ||||| Sbjct 331571 AAGGAGTCCACCCTCCACTTGGTGCT 331546 Score = 93.3 bits (102), Expect = 4e-14 Identities = 156/226 (69%), Gaps = 0/226 (0%) Strand=Plus/Minus Query 25002 CAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCTGAC 25061 || || || || |||||| | || || || | || || | || || ||| ||||| Sbjct 332090 CAGATCTTCGTCAAGACTCTCACTGGCAAGACTATAACGTTGGAGGTCGAGAGCTCTGAT 332031 Query 25062 ACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAACAG 25121 || |||||| ||||| ||| ||| ||||| ||||| || || ||||||||||| Sbjct 332030 ACCATCGAGAGCGTGAAGACAAAGATCCAAGACAAGGAAGGAATCCCCCCTGACCAACAA 331971 Query 25122 CGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAATATT 25181 || |||| || || ||||| || | || |||| |||||| | ||| ||||| || Sbjct 331970 CGCCTTATCTTCGCTGGCAAGCAGCTCGAGGATGGTCGCACCCTCTCCGACTACAACATC 331911 Query 25182 CAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 || || || || || || || || ||||| | || | ||||||| Sbjct 331910 CAGAAGGAGTCTACCCTTCACTTGGTGCTCCGCCTTCGTGGAGGAA 331865 Score = 86.0 bits (94), Expect = 5e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 25002 CAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCTGAC 25061 || || || || ||||| ||||| || || ||||||| ||||||| ||| || || Sbjct 331118 CAGATCTTCGTGAAGACCTTGACTGGCAAGACCATCACCCTCGAAGTAGAGAGCTCCGAT 331059 Query 25062 ACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAACAG 25121 || |||||| ||||| || ||| ||||| ||||| || || ||||||||||| Sbjct 331058 ACCATCGAGAGTGTGAAGACCAAGATCCAGGACAAGGAAGGAATCCCCCCTGACCAACAA 330999 Query 25122 CGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAATATT 25181 || | || || ||||| || || | || || | ||||| | ||| ||||| || Sbjct 330998 CGCTTGATCTTCGCCGGAAAGCAGCTCGAGGACGGACGCACCCTCTCCGACTACAACATC 330939 Query 25182 CAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAAATTA 25231 ||||| || ||| | || || ||||| | || | ||||| || || Sbjct 330938 CAAAAGGAGAGCACCTTGCACTTGGTGCTCCGCCTTCGTGGAGGCAACTA 330889 Score = 82.4 bits (90), Expect = 7e-11 Identities = 152/223 (68%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 25005 ATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCTGACACT 25064 || || || |||||| | || || || |||| || | || || ||| ||||||||| Sbjct 332422 ATTTTCGTGAAGACTCTCACAGGAAAGACCATTACTTTGGAGGTCGAGAGCTCTGACACT 332363 Query 25065 ATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAACAGCGG 25124 |||||| | ||| || ||| ||||| || || || || ||||||||||| || Sbjct 332362 ATCGAGAGTGTCAAGACTAAGATCCAGGACAAGGAGGGAATCCCCCCTGACCAACAACGT 332303 Query 25125 ATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAATATTCAA 25184 | ||||| || ||||| ||| | || |||| | || | || ||||| ||||| Sbjct 332302 CTCATTTTCGCTGGCAAGCAACTCGAGGATGGAAGGACCCTTTCTGACTACAACATTCAG 332243 Query 25185 AAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 || || ||||| || || | ||||| | || | ||||||| Sbjct 332242 AAGGAGTCCACCCTTCACCTTGTGCTCCGCCTTCGTGGAGGAA 332200 >seq30454 Length=461 Score = 118 bits (130), Expect = 9e-22 Identities = 152/207 (73%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 25005 ATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCTGACACT 25064 || || || ||||| | || ||||| | || || | || || ||| ||||||||| Sbjct 234 ATCTTCGTCAAGACCCTCACTGGTAAGACTATTACCCTTGAGGTTGAGAGCTCTGACACT 175 Query 25065 ATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAACAGCG 25123 ||||||||| | ||| | || | ||| ||||| ||||| ||||| ||||||||||| || Sbjct 174 ATCGAGTCAGTAAAGACCAAGATTCAG-GACAAGGAAGGAATTCCCCCTGACCAACAACG 116 Query 25124 GATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAATATTCA 25183 | || ||||| ||||| || | || |||| ||||| | ||| ||||||||||| Sbjct 115 TTTGATCTTTGCTGGCAAGCAGCTCGAGGATGGACGCACCCTCTCCGACTACAATATTCA 56 Query 25184 AAAAGAATCCACGCTACATTTAGTGCT 25210 ||| || ||||| || || || ||||| Sbjct 55 AAAGGAGTCCACCCTTCACTTGGTGCT 29 >seq146 Length=178297 Score = 105 bits (116), Expect = 6e-18 Identities = 152/212 (72%), Gaps = 2/212 (1%) Strand=Plus/Minus Query 25000 TGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCTG 25059 |||| || ||||| || || | || || || ||||||| | || || ||| |||| Sbjct 157907 TGCAGATTTTTGTGAAAACACTCACTGGAAAGACCATCACGTTGGAGGTCGAGAGCTCTG 157848 Query 25060 ACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 |||| |||||| | ||| |||| | ||| ||||| || || ||||| ||||||||| Sbjct 157847 ACACCATCGAGAGCGTCAAGACAAAGATTCAA-GACAAGGAGGGAATTCCCCCTGACCAA 157789 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || || || || || ||| | || || | ||||| | |||| |||||| Sbjct 157788 CAGCGCCTCATCTTCGCTGGAAAGCAACTCGAGGACGGACGCACCCTCAGCGACTACAAT 157729 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||||| || || ||||| || || || ||||| Sbjct 157728 ATTCAGAAGGAGTCCACCCTCCACTTGGTGCT 157697 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 25002 CAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCTGAC 25061 || || || || ||||| | || || || ||||||| | || || ||| || || Sbjct 156848 CAGATCTTCGTCAAGACCCTCACTGGAAAGACCATCACTCTTGAGGTAGAGAGCTCCGAT 156789 Query 25062 ACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAACAG 25121 || |||||||| | ||| || ||| ||||| ||||| || || ||||||||||| Sbjct 156788 ACCATCGAGTCTGTCAAGACCAAGATCCAGGACAAGGAAGGAATCCCCCCTGACCAACAA 156729 Query 25122 CGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAATATT 25181 || | || || || ||||| ||| |||| |||| ||||| | ||| ||||| || Sbjct 156728 CGTTTGATCTTCGCTGGCAAGCAACTAGAGGATGGACGCACCCTCTCCGACTACAACATC 156669 Query 25182 CAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || || ||||| || || || ||||| Sbjct 156668 CAGAAGGAGTCCACCCTCCACTTGGTGCT 156640 Score = 93.3 bits (102), Expect = 4e-14 Identities = 148/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 25002 CAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCTGAC 25061 || || || || ||||| | || || || | || || ||||||| ||| |||||| Sbjct 157585 CAGATCTTCGTTAAGACCCTCACTGGCAAGACTATTACTCTCGAAGTCGAGAGCTCTGAC 157526 Query 25062 ACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAACA 25120 || || ||| | ||| | || | ||| ||||| || || ||||| ||||||||||| Sbjct 157525 ACCATTGAGAGCGTAAAGACTAAGATTCAA-GACAAGGAGGGAATTCCCCCTGACCAACA 157467 Query 25121 GCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAATAT 25180 || | || || ||||| || ||| | || |||| ||||| | ||| ||||| || Sbjct 157466 ACGCCTCATCTTCGCCGGAAAGCAACTCGAGGATGGACGCACCCTCTCCGACTACAACAT 157407 Query 25181 TCAAAAAGAATCCACGCTACATTTAGTGCT 25210 |||||| || ||||| || || || ||||| Sbjct 157406 TCAAAAGGAGTCCACCCTCCACTTGGTGCT 157377 >seq59190 Length=243 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 24996 ACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCG 25055 || ||||| || || || ||||| | || ||||| | || || | || || ||||| Sbjct 29 ACCATGCAGATTTTCGTCAAGACCCTCACGGGTAAGACAATTACCCTTGAGGTCGAGTCC 88 Query 25056 TCTGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 ||||||||||||||| | ||| || ||| |||||||| || || || || ||| Sbjct 89 TCTGACACTATCGAGAGTGTCAAGACCAAGATCCAAGACAAAGAGGGAATCCCTCCCGAC 148 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 |||||||| | || || || || || || | || |||| || ||| | || ||| Sbjct 149 CAACAGCGTCTCATCTTCGCTGGAAAGCAGCTCGAGGATGGACGTACTCTTTCTGACTAC 208 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || ||||| || ||||| || || | ||||| Sbjct 209 AACATCCAAAAGGAGTCCACCCTCCACCTCGTGCT 243 >seq66879 Length=210 Score = 86.0 bits (94), Expect = 5e-12 Identities = 106/144 (74%), Gaps = 1/144 (1%) Strand=Plus/Minus Query 25082 AAAAATCACTGACAAAGAAGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCAA 25141 |||| ||| ||||||||||| || || |||||||||||||| | || || || || || Sbjct 209 AAAATTCAG-GACAAAGAAGGAATCCCCCCTGACCAACAGCGTTTGATCTTCGCTGGAAA 151 Query 25142 ACAATTAGAAGATGATCGCACTGTGGGCGATTACAATATTCAAAAAGAATCCACGCTACA 25201 || || || |||| ||||||| || |||| ||||| || ||||| || ||| || || Sbjct 150 GCAGTTGGAGGATGGTCGCACTTTGAGCGACTACAACATCCAAAAGGAGAGCACACTGCA 91 Query 25202 TTTAGTGCTAAGGCTAAGAGGAGG 25225 | || || | | |||||||| Sbjct 90 CCTTGTCCTCCGCTTGAGAGGAGG 67 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 432959970060905