Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physarum_20polycephalum_20[genbank_20GCA_5F000413255.3_202014-06-30] 69,687 sequences; 205,175,886 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq146 118 9e-22 seq22 116 3e-21 seq2782 111 1e-19 seq6776 95.1 1e-14 seq62579 82.4 6e-11 >seq146 Length=178297 Score = 118 bits (130), Expect = 9e-22 Identities = 152/207 (73%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 22222 CAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGAT 22281 || || || ||||| || | || || || || | ||||| ||||| || | | | || Sbjct 157585 CAGATCTTCGTTAAGACCCTCACTGGCAAGACTATTACTCTCGAAGTCGAGAGCTCTGAC 157526 Query 22282 ACCGTGGACGATATCAAACAAAAA-ATTCAAGACAAGGAGGGTATTCCACCCGATCAACA 22340 ||| | || || ||| | || ||||||||||||||||| ||||| || || ||||| Sbjct 157525 ACCATTGA-GAGCGTAAAGACTAAGATTCAAGACAAGGAGGGAATTCCCCCTGACCAACA 157467 Query 22341 ACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAACAT 22400 ||| || || || ||||| || || | |||||| |||||| ||||||| |||||||| Sbjct 157466 ACGCCTCATCTTCGCCGGAAAGCAACTCGAGGATGGACGCACCCTCTCCGACTACAACAT 157407 Query 22401 TCAAAAAGAATCCACCATACATTTAGT 22427 |||||| || |||||| | || || || Sbjct 157406 TCAAAAGGAGTCCACCCTCCACTTGGT 157380 Score = 96.9 bits (106), Expect = 3e-15 Identities = 146/208 (70%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 22220 TGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCG 22279 |||| |||||||| ||||| | || || || || |||| | || || || | | | | Sbjct 157907 TGCAGATTTTTGTGAAAACACTCACTGGAAAGACCATCACGTTGGAGGTCGAGAGCTCTG 157848 Query 22280 ATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAAC 22339 | ||| | || |||| ||| ||||||||||||||||| ||||| || || |||| Sbjct 157847 ACACCATCGAGAGCGTCAAGACAAAGATTCAAGACAAGGAGGGAATTCCCCCTGACCAAC 157788 Query 22340 AACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAACA 22399 | || || || || || || || || | ||||| |||||| || ||| ||||| | Sbjct 157787 AGCGCCTCATCTTCGCTGGAAAGCAACTCGAGGACGGACGCACCCTCAGCGACTACAATA 157728 Query 22400 TTCAAAAAGAATCCACCATACATTTAGT 22427 |||| || || |||||| | || || || Sbjct 157727 TTCAGAAGGAGTCCACCCTCCACTTGGT 157700 >seq22 Length=338851 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| || || || || | ||||| || || |||| | || || || | | | Sbjct 331529 ATGCAAATCTTCGTCAAGACCCTCACCGGAAAGACCATCACCTTGGAGGTCGAGAGCTCT 331470 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | || | || ||| || ||||||||||| || || || || || ||| Sbjct 331469 GATACCATCGAGAGCGTGAAGACAAAGATCCAAGACAAGGAAGGAATCCCCCCTGACCAA 331410 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||||| ||||| || ||||| || || | |||||| |||||| ||||||| ||||| Sbjct 331409 CAACGCCTTATCTTCGCCGGAAAGCAACTCGAGGATGGACGCACCCTCTCCGACTACAAT 331350 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 |||||||| || |||||| | || || || | || | |||||||| Sbjct 331349 ATTCAAAAGGAGTCCACCTTGCACTTGGTGCTTCGCCTTCGCGGAGG 331303 Score = 100 bits (110), Expect = 2e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 22225 ATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACC 22284 ||||| || || || || ||||| || || ||||| | || || || | | | |||||| Sbjct 331751 ATTTTCGTCAAGACCTTGACCGGAAAGACCATCACTTTAGAGGTCGAGAGCTCTGATACC 331692 Query 22285 GTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGT 22344 | || | || || || |||||||||||||| || || ||||| ||||| ||| Sbjct 331691 ATCGAGAGCGTGAAGACCAAGATCCAAGACAAGGAGGGCATCCCCCCCGACCAACAGCGT 331632 Query 22345 CTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAA 22404 | || |||||||| || ||| | |||||| |||||| | ||| |||||||| || Sbjct 331631 TTGATCTTTGCCGGAAAGCAGCTTGAGGATGGACGCACCTTGAGCGACTACAACATCCAG 331572 Query 22405 AAAGAATCCACCATACATTTAGT 22427 || || |||||| | || || || Sbjct 331571 AAGGAGTCCACCCTCCACTTGGT 331549 Score = 98.7 bits (108), Expect = 8e-16 Identities = 108/144 (75%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 22302 AAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAA 22361 ||| || ||||||||||| || || || || || |||||||| ||||| || || ||||| Sbjct 332010 AAAGATCCAAGACAAGGAAGGAATCCCCCCTGACCAACAACGCCTTATCTTCGCTGGCAA 331951 Query 22362 ACAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACA 22421 ||| | |||||| |||||| ||||||| |||||||| || || || || ||| | || Sbjct 331950 GCAGCTCGAGGATGGTCGCACCCTCTCCGACTACAACATCCAGAAGGAGTCTACCCTTCA 331891 Query 22422 TTTAGTTTTGCGATTGCGCGGAGG 22445 || || | || | || ||||| Sbjct 331890 CTTGGTGCTCCGCCTTCGTGGAGG 331867 >seq2782 Length=10868 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | || || || || |||| || || ||||| | | | Sbjct 9990 ATGCAGATCTTCGTGAAGACACTCACTGGCAAGACCATCACCCTCGAGGTGGAGAGCTCA 9931 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || | || || || || |||||||| || ||||| || || ||| Sbjct 9930 GACACCATCGAGTCCGTGAAGACCAAGATCCAGGACAAGGAAGGAATTCCCCCTGACCAA 9871 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||||||||||| ||||||||||| || |||||||| || ||| |||| ||||||||| Sbjct 9870 CAACGTCTTATCTTTGCCGGCAAGCAACTAGAGGATGGACGTACCCTCTCTGATTACAAC 9811 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGT 22427 || || || || |||||| | || || || Sbjct 9810 ATCCAGAAGGAGTCCACCCTTCACTTGGT 9782 Score = 100 bits (110), Expect = 2e-16 Identities = 97/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 || || || |||||||| || || || || || ||||||||| | || ||||||||||| Sbjct 8965 AAGATCCAGGACAAGGAAGGAATCCCCCCTGACCAACAACGTTTGATCTTTGCCGGCAAG 8906 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACAT 22422 ||| | |||||| |||||| ||||||| |||||||| || || || |||||| | || Sbjct 8905 CAGCTCGAGGATGGACGCACCCTCTCCGACTACAACATCCAGAAGGAGTCCACCCTCCAC 8846 Query 22423 TTAGT 22427 || || Sbjct 8845 TTGGT 8841 Score = 86.0 bits (94), Expect = 5e-12 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 || || || |||||||| || || || || || |||||||| || || ||||| || || Sbjct 9286 AAGATCCAGGACAAGGAAGGAATCCCCCCTGACCAACAACGCCTCATCTTTGCTGGAAAG 9227 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACAT 22422 || ||||||| || ||| | || |||||||||||||| ||||| |||||| | || Sbjct 9226 CAACTAGAGGACGGACGTACCCTTTCTGATTACAACATTCAGAAAGAGTCCACCCTTCAC 9167 Query 22423 TTAGT 22427 || || Sbjct 9166 TTGGT 9162 >seq6776 Length=2740 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | ||||| || ||| || | || || ||||| | | | Sbjct 1213 ATGCAGATCTTCGTGAAGACGCTGACCGGCAAGACGATCGCGCTGGAGGTGGAGCCGAGC 1272 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || || | || || || || ||||||||||| || || || || || Sbjct 1273 GACACGATCGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCGCCGGACCAG 1332 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || || |||||||| ||| | ||||| |||||| |||| || |||||| Sbjct 1333 CAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGAGGGCCGCACGCTCTCGGACTACAAC 1392 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 || || || || ||||| | || | || |||| ||||||| || Sbjct 1393 ATCCAGAAGGAGTCCACGCTGCACCTGGTGCTGCGCCTGCGCGGCGG 1439 >seq62579 Length=228 Score = 82.4 bits (90), Expect = 6e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 || || || ||||||||||| || || || || || || || || || || |||||||| Sbjct 219 AAGATCCAGGACAAGGAGGGCATCCCGCCGGACCAGCAGCGCCTGATCTTCGCCGGCAAG 160 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACAT 22422 ||| | ||||| |||||| |||| || |||||||| || || || ||||| | || Sbjct 159 CAGCTGGAGGAGGGCCGCACGCTCTCGGACTACAACATCCAGAAGGAGTCCACGCTGCAC 100 Query 22423 TTAGTTTTGCGATTGCGCGGAGG 22445 | || |||| ||||||| || Sbjct 99 CTGGTGCTGCGCCTGCGCGGCGG 77 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419371520681155