Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physarum_20polycephalum_20[genbank_20GCA_5F000413255.3_202014-06-30] 69,687 sequences; 205,175,886 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq3521 102 2e-16 seq207 102 2e-16 seq170 102 2e-16 seq54 102 2e-16 seq41615 98.7 2e-15 seq4912 98.7 2e-15 seq418 95.1 2e-14 seq12313 91.5 3e-13 seq2137 91.5 3e-13 seq422 91.5 3e-13 seq301 91.5 3e-13 seq28555 86.0 1e-11 >seq3521 Length=9083 Score = 102 bits (112), Expect = 2e-16 Identities = 62/66 (94%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||||||||||||||| ||||||||||||| ||||||||||||||||| Sbjct 1569 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGACTCTTAATCTTGTGGTCGTGGGTTCGAG 1510 Query 142563 CCCCAC 142568 |||||| Sbjct 1509 CCCCAC 1504 >seq207 Length=149001 Score = 102 bits (112), Expect = 2e-16 Identities = 62/66 (94%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||||||||||||||| ||||||||||||| ||||||||||||||||| Sbjct 146445 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGACTCTTAATCTTGTGGTCGTGGGTTCGAG 146386 Query 142563 CCCCAC 142568 |||||| Sbjct 146385 CCCCAC 146380 >seq170 Length=164710 Score = 102 bits (112), Expect = 2e-16 Identities = 62/66 (94%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||||||||||||||| ||||||||||||| ||||||||||||||||| Sbjct 134166 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGACTCTTAATCTTGTGGTCGTGGGTTCGAG 134107 Query 142563 CCCCAC 142568 |||||| Sbjct 134106 CCCCAC 134101 Score = 86.0 bits (94), Expect = 1e-11 Identities = 56/62 (90%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||||||||||||||| ||||||||||||| ||||||||||||| || Sbjct 128274 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGACTCTTAATCTTGTGGTCGTGGGTTTGAC 128215 Query 142563 CC 142564 || Sbjct 128214 CC 128213 >seq54 Length=256141 Score = 102 bits (112), Expect = 2e-16 Identities = 62/66 (94%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||||||||||||||| ||||||||||||| ||||||||||||||||| Sbjct 77882 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGACTCTTAATCTTGTGGTCGTGGGTTCGAG 77941 Query 142563 CCCCAC 142568 |||||| Sbjct 77942 CCCCAC 77947 >seq41615 Length=348 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||||||||||||||||||||||| | ||||||||||||| | |||| |||||||||| Sbjct 254 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGCTGTCGCGGGTTCGAGC 313 Query 142564 CCCACATCGGGC 142575 ||| |||||||| Sbjct 314 CCCGCATCGGGC 325 >seq4912 Length=4627 Score = 98.7 bits (108), Expect = 2e-15 Identities = 97/123 (79%), Gaps = 2/123 (2%) Strand=Plus/Minus Query 19716 TTCCTTGGTCGCGGGCTCCATGCACCGGTTGCCTACGAAGGCGCCCTCAAGCTCAAGGAG 19775 ||||| || ||||| || ||| ||| | || ||||||||| |||||||||||||| Sbjct 1233 TTCCTCGGGCGCGGCCTGCATTACCCGATCGCGCTCGAAGGCGCGCTCAAGCTCAAGGAA 1174 Query 19776 ATCAGTTACATCCACGCAGAGG-GTATTTCGGCAGGCGAACTTAAGCACGGGCCTCTTGC 19834 ||| ||||||||||| |||| |||| |||| |||||||| ||||||||||| || || Sbjct 1173 ATCTCGTACATCCACGCCGAGGCGTATC-CGGCGGGCGAACTCAAGCACGGGCCGCTCGC 1115 Query 19835 TCT 19837 || Sbjct 1114 GCT 1112 >seq418 Length=100115 Score = 95.1 bits (104), Expect = 2e-14 Identities = 196/287 (68%), Gaps = 6/287 (2%) Strand=Plus/Plus Query 280539 ACTTGGATTGTCCGCGAGACCCTGGAGCAGCTTGGCTTCCAAAAGCTCCTCAATGACATC 280598 || ||| | | |||||||| || ||| | | || |||| ||| ||||||| | || Sbjct 21403 ACCTGGTTGGCCCGCGAGAAGCTCGAGGAAATGGGACTCCAGAAGTTCCTCAAGATCTTC 21462 Query 280599 GACGCCAAGGATGCCGCTGCCAATGGTCTGCTAGGGAAACCTC-TGACTGCCAAGAATGT 280657 |||| |||||| ||||| | | ||||| ||| | || | |||| || || || Sbjct 21463 GACGACAAGGAGGCCGCCCGCGAGGGTCT-CTACCAACGCCCCCTGACCTCCGTCAACGT 21521 Query 280658 TGAGGACCATATGACCAAGCTG--GGTCTGGACCCCGAGTTTACAACTCACTCTCGCATT 280715 || | || ||| |||| || || || ||||||||||| | || ||||| |||||| Sbjct 21522 CCAGAAGCACATG--CAAGATGTTGGACTCGACCCCGAGTTCTCCACCCACTCCCGCATT 21579 Query 280716 CGCGGTCTTTCTGGAGGCCAGAAGGTCAAACTTGTCATCGGAGCAGCTCTGTGGCAACAC 280775 |||| || ||||| |||||||| || | || | | || || ||||| | || Sbjct 21580 GCAAGTCTCTCCGGAGGACAGAAGGTGAAGGTCGTGTTGGCCGCCGCCATGTGGGACAAC 21639 Query 280776 CCTCACGTGATCGTTCTCGACGAGCCTACCAACTATCTGGACCGCGA 280822 || ||| | |||| ||||| || || || ||||| || || ||||| Sbjct 21640 CCGCACATCGTCGTACTCGATGAACCCACTAACTACCTCGATCGCGA 21686 >seq12313 Length=1061 Score = 91.5 bits (100), Expect = 3e-13 Identities = 62/69 (90%), Gaps = 3/69 (4%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGT---CGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTC 142559 |||||| ||||||||| ||||||||||| ||||||||||||| |||||||||||||| Sbjct 358 AGCCCGTCTAGCTCAGTTTTCGGTAGAGCGCAAGACTCTTAATCTTGTGGTCGTGGGTTC 299 Query 142560 GAGCCCCAC 142568 ||||||||| Sbjct 298 GAGCCCCAC 290 >seq2137 Length=14431 Score = 91.5 bits (100), Expect = 3e-13 Identities = 62/69 (90%), Gaps = 3/69 (4%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGT---CGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTC 142559 |||||| ||||||||| ||||||||||| ||||||||||||| |||||||||||||| Sbjct 4544 AGCCCGTCTAGCTCAGTTATCGGTAGAGCGCAAGACTCTTAATCTTGTGGTCGTGGGTTC 4603 Query 142560 GAGCCCCAC 142568 ||||||||| Sbjct 4604 GAGCCCCAC 4612 >seq422 Length=105043 Score = 91.5 bits (100), Expect = 3e-13 Identities = 62/69 (90%), Gaps = 3/69 (4%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGT---CGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTC 142559 |||||| ||||||||| ||||||||||| ||||||||||||| |||||||||||||| Sbjct 18069 AGCCCGTCTAGCTCAGTTATCGGTAGAGCGCAAGACTCTTAATCTTGTGGTCGTGGGTTC 18128 Query 142560 GAGCCCCAC 142568 ||||||||| Sbjct 18129 GAGCCCCAC 18137 >seq301 Length=122670 Score = 91.5 bits (100), Expect = 3e-13 Identities = 62/69 (90%), Gaps = 3/69 (4%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGT---CGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTC 142559 |||||| ||||||||| ||||||||||| ||||||||||||| |||||||||||||| Sbjct 108817 AGCCCGTCTAGCTCAGTTTTCGGTAGAGCGCAAGACTCTTAATCTTGTGGTCGTGGGTTC 108758 Query 142560 GAGCCCCAC 142568 ||||||||| Sbjct 108757 GAGCCCCAC 108749 >seq28555 Length=487 Score = 86.0 bits (94), Expect = 1e-11 Identities = 53/57 (93%), Gaps = 0/57 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTC 142559 |||||| |||||||||||||||||||| ||||||||||||| |||||||||||||| Sbjct 302 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGACTCTTAATCTTGTGGTCGTGGGTTC 358 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1026919080816767