Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physarum_20polycephalum_20[genbank_20GCA_5F000413255.3_202014-06-30] 69,687 sequences; 205,175,886 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq59190 105 6e-18 seq146 105 6e-18 seq66879 87.8 2e-12 seq2782 82.4 6e-11 >seq59190 Length=243 Score = 105 bits (116), Expect = 6e-18 Identities = 145/200 (73%), Gaps = 2/200 (1%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || || ||||| |||||||| || | |||||| ||| || || || || ||| Sbjct 228 GTGGACTCCTTTTGGATGTTGTAGTCAGAAAGAGTACGTCCATCCTCGAGCTGCTTTCCA 169 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 ||| ||||||||||||||||||| ||||| || || |||||||| ||| || || || Sbjct 168 GCGAAGATGAGACGCTGTTGGTCGGGAGGGATTCCCTCTTTGTCTTGGATC-TTGGTCTT 110 Query 114306 AGCTGT-TCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGT 114364 | | || | ||||| | ||| ||||| || | ||| | || || || || || || Sbjct 109 GACACTCTCGATAGTGTCAGAGGACTCGACCTCAAGGGTAATTGTCTTACCCGTGAGGGT 50 Query 114365 TTTTACAAAAATCTGCATGG 114384 || || ||||||||||||| Sbjct 49 CTTGACGAAAATCTGCATGG 30 >seq146 Length=178297 Score = 105 bits (116), Expect = 6e-18 Identities = 163/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || || ||||| || | | || || || | || || || || ||||| ||||| ||| Sbjct 157679 ATTCCACCACGAAGGCGGAGCACCAAGTGGAGGGTGGACTCCTTCTGAATATTGTAGTCG 157738 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || | || || || || ||||| || |||||| ||||||| ||||||||||| || Sbjct 157739 CTGAGGGTGCGTCCGTCCTCGAGTTGCTTTCCAGCGAAGATGAGGCGCTGTTGGTCAGGG 157798 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTT-TGTTTTAGCTGTTCAACGGTGTCGGTGGATTC 114331 ||||| || || ||||| ||||||| | || ||| || | |||||| | | || Sbjct 157799 GGAATTCCCTCCTTGTCTTGAATCTTTGTCTTGACGCT-CTCGATGGTGTCAGAGCTCTC 157857 Query 114332 GACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCA 114381 ||| |||| || | || || || || || ||||| ||||||||||||| Sbjct 157858 GACCTCCAACGTGATGGTCTTTCCAGTGAGTGTTTTCACAAAAATCTGCA 157907 Score = 89.7 bits (98), Expect = 4e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || || ||||| || | | || || || | || || || |||||||||||||| ||| Sbjct 157359 ATGCCACCACGAAGGCGGAGCACCAAGTGGAGGGTGGACTCCTTTTGAATGTTGTAGTCG 157418 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | || || ||| || ||||| || || ||| ||||||| || |||||||| || Sbjct 157419 GAGAGGGTGCGTCCATCCTCGAGTTGCTTTCCGGCGAAGATGAGGCGTTGTTGGTCAGGG 157478 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTT-TTGTTTTAGCTGTTCAACGGTGTCGGTGGATTC 114331 ||||| || || ||||| |||||| | ||| ||| |||| |||||| | | || Sbjct 157479 GGAATTCCCTCCTTGTCTTGAATCTTAGTCTTTACGCT-CTCAATGGTGTCAGAGCTCTC 157537 Query 114332 GACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTG 114379 ||| || | || | || ||||| || || || || || || ||||| Sbjct 157538 GACTTCGAGAGTAATAGTCTTGCCAGTGAGGGTCTTAACGAAGATCTG 157585 >seq66879 Length=210 Score = 87.8 bits (96), Expect = 2e-12 Identities = 78/98 (80%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 114192 TCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAG 114251 || ||||| |||||||| ||||||| ||| ||| ||| || | || || |||||| || Sbjct 103 TCCTTTTGGATGTTGTAGTCGCTCAAAGTGCGACCATCCTCCAACTGCTTTCCAGCGAAG 162 Query 114252 ATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTC 114289 || | |||||||||||| || || || ||||||||||| Sbjct 163 ATCAAACGCTGTTGGTCAGGGGGGATTCCTTCTTTGTC 200 >seq2782 Length=10868 Score = 82.4 bits (90), Expect = 6e-11 Identities = 159/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || || |||||||| | | || || || | || || || || || ||||||||||| Sbjct 9761 ATGCCACCACGTAGACGGAGCACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAATCA 9820 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | ||||| ||| || ||||| || || || |||| ||||| |||||||| || Sbjct 9821 GAGAGGGTACGTCCATCCTCTAGTTGCTTGCCGGCAAAGATAAGACGTTGTTGGTCAGGG 9880 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTG-TTCAACGGTGTCGGTGGATTC 114331 ||||| ||||| ||||| ||| || || || | | || | |||||| | | || Sbjct 9881 GGAATTCCTTCCTTGTCCTGGATC-TTGGTCTTCACGGACTCGATGGTGTCTGAGCTCTC 9939 Query 114332 GACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 114383 || || | ||| | || ||||| || || || || || || ||||||||| Sbjct 9940 CACCTCGAGGGTGATGGTCTTGCCAGTGAGTGTCTTCACGAAGATCTGCATG 9991 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419777575521444