Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physarum_20polycephalum_20[genbank_20GCA_5F000413255.3_202014-06-30] 69,687 sequences; 205,175,886 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq11685 179 7e-40 seq612 109 1e-18 seq1429 89.7 1e-12 >seq11685 Length=1128 Score = 179 bits (198), Expect = 7e-40 Identities = 358/521 (69%), Gaps = 7/521 (1%) Strand=Plus/Plus Query 42285 ATCGAGCACCAGGACATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCC 42344 ||| || |||| ||||||||| || ||||||| || | || || || |||||| | | Sbjct 606 ATCCAGTACCATGACATCTGGCGCAAGTACAAGGAGCAGGAGAGCTGCATCTGGACGGTC 665 Query 42345 GAGGAGATTGACCTGGCCAAGGACACGGCCGGCTGGGAGTCACTGTCTGAGAACGAAAAG 42404 |||||||| ||||||| ||| |||| | | ||||| | ||| || || | Sbjct 666 GAGGAGATCGACCTGGGCAACGACATGAAGGACTGGGCAACGCTGAACGACGGGGAGCGG 725 Query 42405 TTTTTCCTCAAAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAAC 42464 ||| |||| | | || ||||||||||||| | ||||||||||||| ||||| Sbjct 726 CACTTCATCAAGCATGTGCTCGCCTTCTTCGCCGGCAGCGACGGCATAGTCATCGAGAAT 785 Query 42465 CTGGC-CACCAGGTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTT 42523 || || || | | ||||||| || ||| || ||||||||| |||||||| || Sbjct 786 CTCGCGCAGC-GCTTCATGAGCGACGTGAAGGTGCCAGAGGCGCGCGCATTCTACGGGTT 844 Query 42524 CCAGATAGCCATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACAT 42583 |||| | || |||||| | ||||| ||| |||| | ||||| |||||||||| Sbjct 845 CCAGCTGATGATGGAGAACATCCACTCGGAGACGTACTCTGTGCTGCTGGACACGTACAT 904 Query 42584 CCTGGATCCCGTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAA 42643 | ||| || ||| ||||| | | || || ||||||| || |||||| | Sbjct 905 CACGGACAGCGAGGAGAAGCTGCGGCTGCTGCACGCGATACAGACGATCCCGTGCATCCA 964 Query 42644 GAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAG 42703 |||||||||||| ||||| | ||||||| ||| || || | | ||| | ||| | Sbjct 965 GAAGAAGGCGGAGTGGGCCGTGCGGTGGATCGGGAGCAGCG-CG-AGCTTTCAG-GAGCG 1021 Query 42704 GCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTT 42763 |||| | | |||| |||| || |||||||| ||||| || || | ||| | | | || Sbjct 1022 GCTGATCGGCTTTGCCGCGGTGGAGGGCATTTTCTTTTCCGGGTCGTTCTGCGCACTGTT 1081 Query 42764 CTGGCTCAAGCAG-AAGGTGTCGATGCCCGGACTCACCTTC 42803 |||||| ||| || ||| | |||||| || || || ||| Sbjct 1082 CTGGCTGAAGAAGCGCGGTCT-GATGCCAGGGCTGACGTTC 1121 >seq612 Length=73199 Score = 109 bits (120), Expect = 1e-18 Identities = 322/491 (66%), Gaps = 9/491 (2%) Strand=Plus/Plus Query 244688 GCCAGGTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGG 244747 || |||||||| || || ||||| || | |||||| | || ||||| ||||||||| Sbjct 23714 GCAAGGTTGCACACAGCAACCTCGTCTGGCGCGGTGTATTCGATTATCTCTGTGCAGAGG 23773 Query 244748 TTACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTG 244807 || || || |||||| || |||| || ||||| ||||| |||| | ||||||| Sbjct 23774 TTGCTACAAGAGATGGTCCCAAGGTTTTGCTGATTCGACTTCCTGTTGGCCGAGTCCTTG 23833 Query 244808 TAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAGAGGTCC 244867 || |||||| | || |||||||| | || || |||||| | ||| | || Sbjct 23834 TACAGCATGTACGGATTACCGGTCTCTATTTGAGCCTCGAGGATGGCAAACCACAAATCT 23893 Query 244868 CTAGCCTTGACCGTCCTGCGAGCCTTGCCCTC---TGCCTCGTAGCGGGTGTACAGGGCC 244924 ||||| | ||| | | ||| |||||| | || || |||||||| || Sbjct 23894 TGGGCCTTCATTGTCTTCCTGGCCAAGCCCTCAGTTTGTTCATACTTGGTGTACAACTCC 23953 Query 244925 TCGAACTCGGGGCCCCAGACCTCGTCTAGGCC--GGGGCACGACGCCGGGCACATGAGAC 244982 ||||| | ||||||||||| | || || | || | ||||| | ||| Sbjct 23954 TCGAATTGTTCTCCCCAGACCTCAGCAAGTCCTTTAGCTTCGTTG--GGGCAGAAGAGGG 24011 Query 244983 TCCACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGA 245042 ||| || || |||| || | || ||||||||| || |||| ||| || || | || Sbjct 24012 ACCAGTCACCATTTTCCTCCACACGCTTCATGAAGAGATCTGGGACCCAAAGTGCGTAGA 24071 Query 245043 AGAGGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCA-AAAAGTCA 245101 | | ||| | | | | ||| ||| ||| |||||||| | || || | |||| | Sbjct 24072 ATAAGTCTCGCGCGCGATTCTCCTCCTTGCCGGTGTTCTTGCGAAGATCGAGGAAAGATA 24131 Query 245102 AAGACGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTGCCT 245161 | | ||| | |||||||| |||| ||| || || | ||| || |||||| |||| Sbjct 24132 TA-ATGTCAGCATGCCAGGGTTCCAGGTAAACTGCAAAGGCTCCCTTTCGCTTGCCGCCT 24190 Query 245162 CCCTGGTCCAC 245172 || ||||| || Sbjct 24191 CCTTGGTCAAC 24201 >seq1429 Length=23345 Score = 89.7 bits (98), Expect = 1e-12 Identities = 99/132 (75%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 42423 CTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATG 42482 || || ||||| || ||| ||| || || || ||||||||||| || || | |||||| Sbjct 7346 CTTGCTTTCTTTGCTGCCAGTGATGGAATTGTGAATGAGAACCTTGCAACTCGTTTCATG 7405 Query 42483 AAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAAC 42542 |||| || ||| | |||||| |||||||| || || ||||| || ||||| ||||| Sbjct 7406 CAAGAAGTACAGATCCCTGAGGCTCGCTGCTTTTATGGATTCCAAATCGCCATTGAGAAT 7465 Query 42543 GTGCACTCTGAG 42554 | ||||| ||| Sbjct 7466 ATTCACTCCGAG 7477 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 943516597927120