Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Physarum_20polycephalum_20[genbank_20GCA_5F000413255.3_202014-06-30]
69,687 sequences; 205,175,886 total letters
Query= NC_009234.1
Length=35741
Score E
Sequences producing significant alignments: (Bits) Value
seq2320 1014 0.0
seq1165 288 2e-73
>seq2320
Length=11620
Score = 1014 bits (1124), Expect = 0.0
Identities = 1475/2084 (71%), Gaps = 79/2084 (4%)
Strand=Plus/Minus
Query 3092 AACGAAATCAGCGACGAACAGCACAAGCGCATCATCGAAGCGTTCCGCGATTCGCTGTTC 3151
||||| |||||||||| ||| | |||| | ||| || || | ||||||||||||
Sbjct 9672 AACGAGTTCAGCGACGAGCAGGCCGAGCGGCTTCGCGAGGCCTTTCTTGATTCGCTGTTC 9613
Query 3152 GACTATCAGAAAGTCTGGTATCGGAACGGCGATCAGCGCACGCGCAACATCCTGAAATCG 3211
|||||||| || |||||||||||| | || ||||||||||||||||||| || || |||
Sbjct 9612 GACTATCAAAAGGTCTGGTATCGGCAAGGGCATCAGCGCACGCGCAACATTCTCAAGTCG 9553
Query 3212 CGGCAGATCGGTGCGACGTGGTACTTCGCGCGCGAGGCGCTCGTCGACGCGCTCGACACC 3271
||||||||||| ||||||||||| ||||| || ||||| || | ||||||| || |||
Sbjct 9552 CGGCAGATCGGCGCGACGTGGTATTTCGCACGAGAGGCACTGGACGACGCGATCACGACC 9493
Query 3272 GACCGCAATCAGATCTTCCTATCGGCCAGCAAGGCGCAGGCGCACGTCTTCAAGCAATAC 3331
| |||| ||||||| || || |||||||||||||| || |||||||| |||| ||| |||
Sbjct 9492 GGCCGCGATCAGATTTTTCTGTCGGCCAGCAAGGCACACGCGCACGTTTTCACGCAGTAC 9433
Query 3332 ATCACGCAGTTCGCGCGCGATGCCGCCGACGTCGAGCTCACGGGCGACCCGATCATCTTG 3391
|| ||||| |||||||| |||||||| |||||||| || ||||||||||||||||||
Sbjct 9432 ATTTGCCAGTTTGCGCGCGAGGCCGCCGATGTCGAGCTAACAGGCGACCCGATCATCTTG 9373
Query 3392 CCGAGCGGTGCGACGCTGTACTTCCTGGGGACGAACGCGCGTACCGCGCAGTCGTATCAC 3451
|||| | |||||| | ||| || || ||||||||||| ||||| ||| ||||||
Sbjct 9372 CCGAATGAGGCGACGTTACGCTTTCTAGGCACGAACGCGCGCACCGCACAGAGCTATCAC 9313
Query 3452 GGCAACTTCTATTTCGACGAATACTTTTGGGTTC-CGAAGTTCCGCGAGTTGAACAAGGT 3510
||||| |||||||||||||||||||||||| | || | ||| ||||| |||| |||||
Sbjct 9312 GGCAATTTCTATTTCGACGAATACTTTTGGACTGGCGGATTTC-GCGAGCTGAATAAGGT 9254
Query 3511 TGCGTCGGGCATGGCGATGCAC-AAGCGCTGGCGCAAGACCTACTTCAGCACGCCGTCGA 3569
||||||||||||||||||||| || ||| | || ||||| ||| |||||||||||
Sbjct 9253 CGCGTCGGGCATGGCGATGCACAAAAAAATGGAGAAAAACCTATTTCTCCACGCCGTCGA 9194
Query 3570 GTGTCACGCACGAGGCGTTCGCGTTCTGGAGCGGCGCGCACGCGAACCGCGGCCGCGCCG 3629
| | || | || | | |||||||| |||| |||| ||||| ||||||||
Sbjct 9193 GCATTGGACATGCCGCCTATACCTTCTGGAGTGGCGAGCACTTCAACCGAGGCCGCGCAA 9134
Query 3630 CGGGCGAGC----GCATCCAGATCGACACGAGCCACGAGGCGCTCGTGCGCGGCATGTTG 3685
|| ||| | ||||| || || ||| | | ||||||||| ||||| |
Sbjct 9133 AGGTCGATCATCTGCATCTGGA-CGTAACG---CGCAAGGCGCTCGCCGGCGGCCGTCTC 9078
Query 3686 TGCGAGGACGCGCAGTGGCGGCAGATCGTGACCGTGCTCGACGCGATGGCGGGCGGCTGC 3745
|||||||| ||| ||||| |||||||||||||| || || | || ||||| |||
Sbjct 9077 TGCGAGGATAGGCAATGGCGCCAGATCGTGACCGTCGAGGATGCCGTCGCCGGCGGGTGC 9018
Query 3746 AACCTGTTCGACATCGACGAGCTGCGCCGCGAATACAGCGCCGAGGAATTCGCGAACCTG 3805
|||||||||| |||| |||||| || | ||||||||||| |||||| ||| || |||
Sbjct 9017 GACCTGTTCGATATCGGCGAGCTACGTCTTGAATACAGCGCGCAGGAATACGCCAATCTG 8958
Query 3806 CTGATGTGCCACTTCATCGACGATTCGCTGTCGGTGTTCAAGCTGTCGGACCTGCAACGC 3865
|||||||||| || ||||||||| | |||| | ||| ||| |||| | || ||
Sbjct 8957 TTGATGTGCCAGTTTATCGACGATACAGCGTCGATTTTCCCGCTCGCGGATTTACAGCGT 8898
Query 3866 TGCATGGTCGACTCGTGGGAGGAATGGGCGGACGACTTTTCGCCGCTGCTGCTGCGTCCG 3925
||||||||||| || | |||| ||
Sbjct 8897 TGCATGGTCGA--------------------------TTGCCCCGC-----------CCT 8875
Query 3926 TTCGGTCATCGCGAGGTGTGGGTCGGCTACGATCCGGCGCTCACGGGCGACTCGGCGGGG 3985
||||| ||||| | ||||||||||||| || || ||||| |||| |||||||| ||
Sbjct 8874 TTCGGCTATCGCCCGCTGTGGGTCGGCTATGACCCAGCGCTATCGGGTGACTCGGCCGGC 8815
Query 3986 CTCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCTTCCGCGTGCT-CGAACGTCA 4044
| || |||||||| | | ||
Sbjct 8814 TTGAGCGTCGTCGCACCGCCGGCGGTGCCTGGGGGCAAGTTTCGCGTGCTGCACAAGT-G 8756
Query 4045 CCAGTTCCGCGGCAACGACTTTGAGGAACAGGCCGCGGCAATCGAGGCGATCACGCAGCG 4104
||| | ||||||| || || |||| |||||||| ||| || |||||||||||||
Sbjct 8755 CCAATGGCGCGGCATGGATTTCGAGGCACAGGCCGAGGCGATACGCGCGATCACGCAGCA 8696
Query 4105 CTACAACGTCGGCTACATCGCGATCGACACCACGGGCATGGGGCAAGGCGTCTACCAGCT 4164
|||||||||| ||| || |||||||| || || ||||| || || |||||||| |||||
Sbjct 8695 ATACAACGTCGCCTATATGGCGATCGATACGACAGGCATCGGCCAGGGCGTCTATCAGCT 8636
Query 4165 CGTGCGCAAGTTCTTCCCGGCCGCCGTCGCGCTGAACTACTCGCCCGAGGTGAAAACCCG 4224
||| | |||||| ||| ||| |||||||| ||||| ||||| || || || |||
Sbjct 8635 CGTCAGGCAGTTCTATCCGAACGCGGTCGCGCTCAACTATTCGCCAGAAGTTAAGGGCCG 8576
Query 4225 CCTCGTGCTCAAGGGCCAGTCCGTCGTCCGGAACGGCCGCCTGCAATTCGACGCGGGCTG 4284
||| |||||||| ||| ||| || || | || ||||| || ||||||| || || ||
Sbjct 8575 CCTGGTGCTCAAAGGCTTGTCGGTGATCGGTAAGGGCCGGCTCGAATTCGATGCCGGATG 8516
Query 4285 GACCGATCTGGCGGCGGCGTTCATGGCGAT---CAAACAGACGATGACGGCGAGCGGCCG 4341
||| || | ||| ||||||||||||| |||| || ||||||||||||||
Sbjct 8515 GACAGACTTAGCGCAATCGTTCATGGCGATTCGCAAA---ACCATGACGGCGAGCGGAAA 8459
Query 4342 CCAGGCGACCTACACCGCCGGCCGTACCGAGGAAACCGGCCACGCCGATCTGGCGTGGGC 4401
| | || || || |||||| |||| |||| || ||||| || || || |||||
Sbjct 8458 GAAAGTCACTTATGAAGCGAGCCGTAACGAGCAAACAGGACACGCGGACCTTGCCTGGGC 8399
Query 4402 CTGCCTGCACGCAATCGACCGCGAGCCGCTCGCCGGCG---GCGGCATTCATTCTTCTTC 4458
||||||||||| ||| | ||| ||| | | |||| || || || | | |
Sbjct 8398 GTGCCTGCACGCGCTCGGCAACGAACCGTTAGAAGGCGTCACCGCCAACAATAC--CGGC 8341
Query 4459 TTTCACGGAGTTTTACGCATGAGCAAgcgccgatcgcgcgcgccgcgcacgttcgcggcc 4518
||| | |||||| | ||||||||||| | | || |||||| | || ||
Sbjct 8340 TTT-ATGGAGTTCTCAAATTGAGCAAGCGC--AACATGCACGCCGCAC-------CGCCC 8291
Query 4519 gcgcccaatccga--gcgccggcagcgccg-cgccggcgcgtgccgAGGTCTTCACGTTC 4575
|| | ||| ||| | || || || ||||| || | ||||||| |||||| |||
Sbjct 8290 GCAC---TGTCGACTGCGGCCGCCCCGTCGACGCCGCCGAGGGCCGAGGCCTTCACCTTC 8234
Query 4576 GACGATCCGACGCCCGTCATGAACCGGGCCGAGATTCTCGATTACGTCGAGTGCTGGTCG 4635
| ||| || ||| || ||| |||| ||||||||||| || |||||||| ||||||
Sbjct 8233 GGCGACGCGGTGCCAGTAATGGACCGCGCCGAGATTCTTGACTACGTCGAAACGTGGTCG 8174
Query 4636 AACGGCGAATGGTTCGAGCCGCCGGTCAGCTTCGCCGGCCTGGCGAAATCGTTTCGCGCG 4695
|||| | ||||||||||||||||| | | |||||||| ||| | || |||||
Sbjct 8173 GCCGGCAACTGGTTCGAGCCGCCGGTGTCGTGGTCGGGCCTGGCTAAAACATTCCGCGCC 8114
Query 4696 AGCACGCACCATAGCTCGGCGCTGTTCTTCAAGGCGAACGTGCTGGCGTCGACGTTCCGC 4755
|| || || |||||||| | | |||||| |||||||| || ||||||||
Sbjct 8113 GGCGTCCATCACGGCTCGGCGATCTACTTCAAACGTAACGTGCTATCGGCGACGTTCATT 8054
Query 4756 CCGCACCGCTGGCTGTCGCGGCACGCGTTCGAGCGGTGGGCGCTCGATTTCCTGACGTTC 4815
|||||| | | ||| |||| | | |||||| |||||||||||||||||| ||||||
Sbjct 8053 CCGCACAGGTTGCTCACGCGCGAAGTGTTCGATAAGTGGGCGCTCGATTTCCTCACGTTC 7994
Query 4816 GGCAACGGCTATCTGGAACGCCGCCGCAACATGGTCGGCGGCACGCTGCGGCTCGAGCCC 4875
||||| || ||||| || | || ||| | | ||||| |||| | ||||||
Sbjct 7993 GGCAATGGGTATCTTGAGCTGCGAAAGAACCGGCTAGGCGGGCCGCTTGCGTTCGAGCGT 7934
Query 4876 GCGCTCGCGAAGTACGTCCGGCGCAAGGCCGA-TTTCAGCGGCTTCGTGTACGTGAACGG 4934
|||| || |||||| | || ||| | | || | |||| ||||| | || |||||
Sbjct 7933 GCGCCAGCCAAGTACATGCGCCGCGCGACGGACCTACAGC-GCTTCTATCAGGTCAACGG 7875
Query 4935 CTGGCAGGAGCGGCACGAGTTCGAGCCCGACAGCGTGTTCCAGCTCGTGCGGCCGGACAT 4994
||||||| | ||||||||||| | ||| | |||| || | || ||||||||
Sbjct 7874 GTGGCAGGCGTCGCACGAGTTCGCGGCCGGGACCGTGCATCACTTGATGGAACCGGACAT 7815
Query 4995 CAATCAGGAGGTCTATGGCCTGCCCGAGTATCTGAGCTCGCTGCACTCGGCCTGGCTGAA 5054
||||||||||| |||||| ||||||| ||||| || | |||||| |||| ||| ||||
Sbjct 7814 TAATCAGGAGGTGTATGGCTTGCCCGAATATCTCGGCGCCCTGCACGCGGCATGGTTGAA 7755
Query 5055 CGAATCGTCGACGCTGTTCCGGCGCAAGTATTACGAGAACGGCAGCCACGCCGGCTTCAT 5114
||| ||| ||||||| || || || |||||||||||| || ||||| ||||| ||
Sbjct 7754 CGAGTCGGCGACGCTATTTCGCCGGCGGTATTACGAGAATGGTTCGCACGCGGGCTTTAT 7695
Query 5115 CCTGTACATGACCGACGCCGCGCAGAAGCAGGACGACGTGGACA 5158
|||||||||||| || || |||||| ||| ||| || ||||
Sbjct 7694 CCTGTACATGACGGATGCGGCGCAGTCGCAAACCGATGTCGACA 7651
Score = 226 bits (250), Expect = 6e-55
Identities = 205/258 (79%), Gaps = 0/258 (0%)
Strand=Plus/Minus
Query 5229 CGGGAAGAAGGACGGCATCCAGCTCATTCCCGTGTCCGAGGTCGCCGCGAAGGACGAGTT 5288
||| ||||| ||||| ||||||||||||||||| ||||||||| | ||||| ||||||||
Sbjct 7580 CGGCAAGAAAGACGGTATCCAGCTCATTCCCGTTTCCGAGGTCACGGCGAAAGACGAGTT 7521
Query 5289 CTTCAACATCAAGAACGTGACGCGCGACGATCTGCTCGCCGCGCACCGCGTGCCGCCGCA 5348
||||| |||||||| || ||||||||||| ||||||| ||||| ||| | || |||||
Sbjct 7520 TTTCAATATCAAGAATGTCACGCGCGACGACTTGCTCGCGGCGCATCGCATCCCCCCGCA 7461
Query 5349 GTTGCTCGGCATCGTGCCGAGCAATTCGGGCGGGTTCGGCACGCCGGATACCGCCGCGCG 5408
| | | || ||||||||||||||| | ||||| || ||| || | || || |||||
Sbjct 7460 GCTCATGGGGATCGTGCCGAGCAATACCGGCGGATTTGGCGCGGCCGACACGGCCGCCGA 7401
Query 5409 TGTGTTCGGGCGCAACGAAATCAGGCCGCTACAGGCGCGCTTCGCCGAGCTGAACGACTG 5468
|| |||||||| || |||||| || || || ||| |||||| |||| || |||||
Sbjct 7400 GGTATTCGGGCGTAATGAAATCGAACCCCTGCAACGGCGGTTCGCCCAGCTCAATGACTG 7341
Query 5469 GCTCGGCGACGAGGTCGT 5486
| ||||||||||||| ||
Sbjct 7340 GATCGGCGACGAGGTTGT 7323
Score = 134 bits (148), Expect = 3e-27
Identities = 245/355 (69%), Gaps = 4/355 (1%)
Strand=Plus/Minus
Query 18361 ATGTGCGCGATCAGGACCTTCGCGAGCGCGTCGCCGACGATCGGCGCCAGCGAGTAGCGC 18420
|| ||||||||| || |||||||| |||||| ||| |||| || || ||
Sbjct 10035 ATATGCGCGATCGCGATTTTCGCGAGGGCGTCGGCGATCGCCGGCTTGAGGCTGTGCCGG 9976
Query 18421 CCGGCGATCGCGTGGACGATCGAGCCGATCGTCTGTCGATGCCAGCTCTTCTCGCGGCGC 18480
||||||||| | | ||||||| ||||| ||| | | ||||||||| ||| ||
Sbjct 9975 CCGGCGATCTTGCGCACGATCGGGCCGAGCGTTTCGCCGTGCCAGCTCGCCTCCTTTCGT 9916
Query 18481 TCCTGCATGCCGCTCGTCATCGCGGCCGAGCGCGCGCGGATGGTGACGATGTCCGGCGCG 18540
|| | |||| | | ||||||| |||||||||||| || ||||||| ||| |||| ||
Sbjct 9915 TCGTCCATGTCCTTGGTCATCGAGGCCGAGCGCGCCCGAATGGTGAGGATATCCGCGCCG 9856
Query 18541 CCGCTGTGCTCGACTTCGTTCACAACGAAGCTGCCCTTGTCGACGA-GCGGCTCGCCGGC 18599
||||||||||| || |||| || ||| |||||||||||||| || | | |||
Sbjct 9855 CCGCTGTGCTCTACCTCGTCGACGGTAAAGGCGCCCTTGTCGACGACGCCGGT-ATCGGA 9797
Query 18600 CCATCCGATCGACGCCTTGATCGTCGCGCCGCGCTTCGGAATGTCCAGATCGTTTTTCGA 18659
||| |||| |||| | | | |||||||||| || || | || | | |
Sbjct 9796 CCAGCCGAACGACACGCGCAGCACGGCGCCGCGCTCGGGGATCGCAAGCCGGCCGTCTGC 9737
Query 18660 GTCGTCGAGCACGATATCGATGGTGTCCGCCTCGT--CGGAGCGCGACTCCGAAA 18712
|| | || |||||||||| |||| || |||| || ||||||||| ||||
Sbjct 9736 ATCATTGACGACGATATCGAGCATGTCGGCTTCGTCGCGCCGCGCGACTCGGAAA 9682
Score = 120 bits (132), Expect = 7e-23
Identities = 217/313 (69%), Gaps = 7/313 (2%)
Strand=Plus/Minus
Query 16050 GCCAGCCGCAGGAGAAAAAGAAAAC--AATGGATCAGAAGTTCAGTGGTGAGGTCGGGCA 16107
||||||||| ||| || |||| |||| | ||||| |||| || | |||||||
Sbjct 11615 GCCAGCCGCGTTGGAAGAATAAAAAGTAATGCAACAGAAATTCAACGGGAACATCGGGCA 11556
Query 16108 GGTTGCCGGCCGGGACGTTAAAAACAGCGGTGCACAAGCAAGCGTCAACATTCACCTGCA 16167
||||| ||||| | || || | | | || ||| | | ||| | | | || | ||
Sbjct 11555 AGTTGCAGGCCGCCATGTCAAGACGAATAGCGCGCAATCCAACGTAAGCGTGCATATCCA 11496
Query 16168 CAACGGGGTGGAATCAAAGCGGTATATCAGTGATCGCCAACGACGTGCGATTGGCGCGAA 16227
||||| | || | | | || ||||| ||||| || || ||||||| | | || |
Sbjct 11495 CAACGAACCGAAACCGA---GTTACATCAGCGATCGTCAGCGTAGTGCGATCG-CACGCA 11440
Query 16228 AGTCTT-TGAGCTTGAAGCAAAGACGGGCGTCGAAAAGCTGATGGTGTACCGGCGTTTGA 16286
|| | | | || | |||| |||||| ||| ||||||||||| || ||||| ||||
Sbjct 11439 AGGCGTATCAGATCCAAGCCAAGACGCAGACCGACAAGCTGATGGTCTATCGGCGCTTGA 11380
Query 16287 TGACCAGATTCAAGTTCCGGAGCATGGACGAGATGCCGCGCGAACTGTTCGAGCGGGTGA 16346
||||| |||||||| | || ||||||||||||||||||||| ||| | |||| | |
Sbjct 11379 TGACCGTGTTCAAGTTTCCGAACATGGACGAGATGCCGCGCGACGTGTACCAGCGTGCAA 11320
Query 16347 TGCGGTATCTCGA 16359
|| ||||||||
Sbjct 11319 TGTCATATCTCGA 11307
>seq1165
Length=30767
Score = 288 bits (318), Expect = 2e-73
Identities = 314/416 (75%), Gaps = 2/416 (0%)
Strand=Plus/Minus
Query 7034 CAGCAAGTACGGCGCCAACGGAGCGAGCTTTATCGAATTTTCTTCTACGATTGCCCGCCG 7093
|||| ||||| | | ||| | || ||||| || ||| |||||||||||||||| |||
Sbjct 30095 CAGCGCGTACGAGGTGAGCGGCGGGACCTTTAGCGCATTCTCTTCTACGATTGCCCACCG 30036
Query 7094 TTGGACAAGAAAATGCACAATCCGATCAGCAAACAAGCGATCGATTTTGGCAAGTCTACC 7153
||||| |||||||| |||||||| ||||||||||| || | |||||||||||||| |
Sbjct 30035 TTGGAGAAGAAAATACACAATCCAATCAGCAAACAGGCAGTGGATTTTGGCAAGTCCGCA 29976
Query 7154 GAAGCCGCATTTCGGCTCGCACTTCATCAGCACTTGCGCGGGATGCGTAAGGTCGCCCTT 7213
||||| ||||||| || | | | || ||| |||| || ||||| || || || |||
Sbjct 29975 GAAGCGACATTTCGACTGGAATTGCACGGGCATCTGCGGGGCATGCGCAAAGTTGCGCTT 29916
Query 7214 CGCCTTGGGCACCTCTCGGCCTTCACTCAATGGGCGATAAAGCCCGACAAAGTTGGTCTC 7273
|| || |||||||| ||||| | || || ||| | || ||||| | ||||| |
Sbjct 29915 CGGCTCGGGCACCTTTCGGCGT--ACACAGTGGACCATCAAGCCAGCTAAAGTCGCGGAA 29858
Query 7274 TTGCTCGCAGGCAAGATGCAGATGGCTGACCTCACCCCTGAAGATGTGATGGTTGATGTT 7333
| || | |||| ||| ||||||| || || | || |||||| ||| || || ||
Sbjct 29857 CTACTGTCGGGCAGGATTCAGATGGGCGATCTGTCGCCGGAAGATATGACAGTAGACATT 29798
Query 7334 CGACAGAAGGGCGTCGACATGCGCATCGGACTGGACGTCTCATCGTTGGCGTTCAAGAAG 7393
|| ||||||||||| |||||||| ||||| ||||||| || || ||||||||||| |
Sbjct 29797 CGCCAGAAGGGCGTAGACATGCGTATCGGTGTGGACGTGTCGTCCTTGGCGTTCAAAAGA 29738
Query 7394 CAGGTGGATCAGATCGTATTGATTGCCGGCGACGCGGATTTCGTGCCGGCCGCAAA 7449
||||| || ||||| |||||||| ||||||||||| ||||| || ||||| || ||
Sbjct 29737 CAGGTAGACCAGATTGTATTGATCGCCGGCGACGCCGATTTTGTTCCGGCAGCCAA 29682
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 114155054671482
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