Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physarum_20polycephalum_20[genbank_20GCA_5F000413255.3_202014-06-30] 69,687 sequences; 205,175,886 total letters Query= NC_009234.1 Length=35741 Score E Sequences producing significant alignments: (Bits) Value seq2320 1014 0.0 seq1165 288 2e-73 >seq2320 Length=11620 Score = 1014 bits (1124), Expect = 0.0 Identities = 1475/2084 (71%), Gaps = 79/2084 (4%) Strand=Plus/Minus Query 3092 AACGAAATCAGCGACGAACAGCACAAGCGCATCATCGAAGCGTTCCGCGATTCGCTGTTC 3151 ||||| |||||||||| ||| | |||| | ||| || || | |||||||||||| Sbjct 9672 AACGAGTTCAGCGACGAGCAGGCCGAGCGGCTTCGCGAGGCCTTTCTTGATTCGCTGTTC 9613 Query 3152 GACTATCAGAAAGTCTGGTATCGGAACGGCGATCAGCGCACGCGCAACATCCTGAAATCG 3211 |||||||| || |||||||||||| | || ||||||||||||||||||| || || ||| Sbjct 9612 GACTATCAAAAGGTCTGGTATCGGCAAGGGCATCAGCGCACGCGCAACATTCTCAAGTCG 9553 Query 3212 CGGCAGATCGGTGCGACGTGGTACTTCGCGCGCGAGGCGCTCGTCGACGCGCTCGACACC 3271 ||||||||||| ||||||||||| ||||| || ||||| || | ||||||| || ||| Sbjct 9552 CGGCAGATCGGCGCGACGTGGTATTTCGCACGAGAGGCACTGGACGACGCGATCACGACC 9493 Query 3272 GACCGCAATCAGATCTTCCTATCGGCCAGCAAGGCGCAGGCGCACGTCTTCAAGCAATAC 3331 | |||| ||||||| || || |||||||||||||| || |||||||| |||| ||| ||| Sbjct 9492 GGCCGCGATCAGATTTTTCTGTCGGCCAGCAAGGCACACGCGCACGTTTTCACGCAGTAC 9433 Query 3332 ATCACGCAGTTCGCGCGCGATGCCGCCGACGTCGAGCTCACGGGCGACCCGATCATCTTG 3391 || ||||| |||||||| |||||||| |||||||| || |||||||||||||||||| Sbjct 9432 ATTTGCCAGTTTGCGCGCGAGGCCGCCGATGTCGAGCTAACAGGCGACCCGATCATCTTG 9373 Query 3392 CCGAGCGGTGCGACGCTGTACTTCCTGGGGACGAACGCGCGTACCGCGCAGTCGTATCAC 3451 |||| | |||||| | ||| || || ||||||||||| ||||| ||| |||||| Sbjct 9372 CCGAATGAGGCGACGTTACGCTTTCTAGGCACGAACGCGCGCACCGCACAGAGCTATCAC 9313 Query 3452 GGCAACTTCTATTTCGACGAATACTTTTGGGTTC-CGAAGTTCCGCGAGTTGAACAAGGT 3510 ||||| |||||||||||||||||||||||| | || | ||| ||||| |||| ||||| Sbjct 9312 GGCAATTTCTATTTCGACGAATACTTTTGGACTGGCGGATTTC-GCGAGCTGAATAAGGT 9254 Query 3511 TGCGTCGGGCATGGCGATGCAC-AAGCGCTGGCGCAAGACCTACTTCAGCACGCCGTCGA 3569 ||||||||||||||||||||| || ||| | || ||||| ||| ||||||||||| Sbjct 9253 CGCGTCGGGCATGGCGATGCACAAAAAAATGGAGAAAAACCTATTTCTCCACGCCGTCGA 9194 Query 3570 GTGTCACGCACGAGGCGTTCGCGTTCTGGAGCGGCGCGCACGCGAACCGCGGCCGCGCCG 3629 | | || | || | | |||||||| |||| |||| ||||| |||||||| Sbjct 9193 GCATTGGACATGCCGCCTATACCTTCTGGAGTGGCGAGCACTTCAACCGAGGCCGCGCAA 9134 Query 3630 CGGGCGAGC----GCATCCAGATCGACACGAGCCACGAGGCGCTCGTGCGCGGCATGTTG 3685 || ||| | ||||| || || ||| | | ||||||||| ||||| | Sbjct 9133 AGGTCGATCATCTGCATCTGGA-CGTAACG---CGCAAGGCGCTCGCCGGCGGCCGTCTC 9078 Query 3686 TGCGAGGACGCGCAGTGGCGGCAGATCGTGACCGTGCTCGACGCGATGGCGGGCGGCTGC 3745 |||||||| ||| ||||| |||||||||||||| || || | || ||||| ||| Sbjct 9077 TGCGAGGATAGGCAATGGCGCCAGATCGTGACCGTCGAGGATGCCGTCGCCGGCGGGTGC 9018 Query 3746 AACCTGTTCGACATCGACGAGCTGCGCCGCGAATACAGCGCCGAGGAATTCGCGAACCTG 3805 |||||||||| |||| |||||| || | ||||||||||| |||||| ||| || ||| Sbjct 9017 GACCTGTTCGATATCGGCGAGCTACGTCTTGAATACAGCGCGCAGGAATACGCCAATCTG 8958 Query 3806 CTGATGTGCCACTTCATCGACGATTCGCTGTCGGTGTTCAAGCTGTCGGACCTGCAACGC 3865 |||||||||| || ||||||||| | |||| | ||| ||| |||| | || || Sbjct 8957 TTGATGTGCCAGTTTATCGACGATACAGCGTCGATTTTCCCGCTCGCGGATTTACAGCGT 8898 Query 3866 TGCATGGTCGACTCGTGGGAGGAATGGGCGGACGACTTTTCGCCGCTGCTGCTGCGTCCG 3925 ||||||||||| || | |||| || Sbjct 8897 TGCATGGTCGA--------------------------TTGCCCCGC-----------CCT 8875 Query 3926 TTCGGTCATCGCGAGGTGTGGGTCGGCTACGATCCGGCGCTCACGGGCGACTCGGCGGGG 3985 ||||| ||||| | ||||||||||||| || || ||||| |||| |||||||| || Sbjct 8874 TTCGGCTATCGCCCGCTGTGGGTCGGCTATGACCCAGCGCTATCGGGTGACTCGGCCGGC 8815 Query 3986 CTCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCTTCCGCGTGCT-CGAACGTCA 4044 | || |||||||| | | || Sbjct 8814 TTGAGCGTCGTCGCACCGCCGGCGGTGCCTGGGGGCAAGTTTCGCGTGCTGCACAAGT-G 8756 Query 4045 CCAGTTCCGCGGCAACGACTTTGAGGAACAGGCCGCGGCAATCGAGGCGATCACGCAGCG 4104 ||| | ||||||| || || |||| |||||||| ||| || ||||||||||||| Sbjct 8755 CCAATGGCGCGGCATGGATTTCGAGGCACAGGCCGAGGCGATACGCGCGATCACGCAGCA 8696 Query 4105 CTACAACGTCGGCTACATCGCGATCGACACCACGGGCATGGGGCAAGGCGTCTACCAGCT 4164 |||||||||| ||| || |||||||| || || ||||| || || |||||||| ||||| Sbjct 8695 ATACAACGTCGCCTATATGGCGATCGATACGACAGGCATCGGCCAGGGCGTCTATCAGCT 8636 Query 4165 CGTGCGCAAGTTCTTCCCGGCCGCCGTCGCGCTGAACTACTCGCCCGAGGTGAAAACCCG 4224 ||| | |||||| ||| ||| |||||||| ||||| ||||| || || || ||| Sbjct 8635 CGTCAGGCAGTTCTATCCGAACGCGGTCGCGCTCAACTATTCGCCAGAAGTTAAGGGCCG 8576 Query 4225 CCTCGTGCTCAAGGGCCAGTCCGTCGTCCGGAACGGCCGCCTGCAATTCGACGCGGGCTG 4284 ||| |||||||| ||| ||| || || | || ||||| || ||||||| || || || Sbjct 8575 CCTGGTGCTCAAAGGCTTGTCGGTGATCGGTAAGGGCCGGCTCGAATTCGATGCCGGATG 8516 Query 4285 GACCGATCTGGCGGCGGCGTTCATGGCGAT---CAAACAGACGATGACGGCGAGCGGCCG 4341 ||| || | ||| ||||||||||||| |||| || |||||||||||||| Sbjct 8515 GACAGACTTAGCGCAATCGTTCATGGCGATTCGCAAA---ACCATGACGGCGAGCGGAAA 8459 Query 4342 CCAGGCGACCTACACCGCCGGCCGTACCGAGGAAACCGGCCACGCCGATCTGGCGTGGGC 4401 | | || || || |||||| |||| |||| || ||||| || || || ||||| Sbjct 8458 GAAAGTCACTTATGAAGCGAGCCGTAACGAGCAAACAGGACACGCGGACCTTGCCTGGGC 8399 Query 4402 CTGCCTGCACGCAATCGACCGCGAGCCGCTCGCCGGCG---GCGGCATTCATTCTTCTTC 4458 ||||||||||| ||| | ||| ||| | | |||| || || || | | | Sbjct 8398 GTGCCTGCACGCGCTCGGCAACGAACCGTTAGAAGGCGTCACCGCCAACAATAC--CGGC 8341 Query 4459 TTTCACGGAGTTTTACGCATGAGCAAgcgccgatcgcgcgcgccgcgcacgttcgcggcc 4518 ||| | |||||| | ||||||||||| | | || |||||| | || || Sbjct 8340 TTT-ATGGAGTTCTCAAATTGAGCAAGCGC--AACATGCACGCCGCAC-------CGCCC 8291 Query 4519 gcgcccaatccga--gcgccggcagcgccg-cgccggcgcgtgccgAGGTCTTCACGTTC 4575 || | ||| ||| | || || || ||||| || | ||||||| |||||| ||| Sbjct 8290 GCAC---TGTCGACTGCGGCCGCCCCGTCGACGCCGCCGAGGGCCGAGGCCTTCACCTTC 8234 Query 4576 GACGATCCGACGCCCGTCATGAACCGGGCCGAGATTCTCGATTACGTCGAGTGCTGGTCG 4635 | ||| || ||| || ||| |||| ||||||||||| || |||||||| |||||| Sbjct 8233 GGCGACGCGGTGCCAGTAATGGACCGCGCCGAGATTCTTGACTACGTCGAAACGTGGTCG 8174 Query 4636 AACGGCGAATGGTTCGAGCCGCCGGTCAGCTTCGCCGGCCTGGCGAAATCGTTTCGCGCG 4695 |||| | ||||||||||||||||| | | |||||||| ||| | || ||||| Sbjct 8173 GCCGGCAACTGGTTCGAGCCGCCGGTGTCGTGGTCGGGCCTGGCTAAAACATTCCGCGCC 8114 Query 4696 AGCACGCACCATAGCTCGGCGCTGTTCTTCAAGGCGAACGTGCTGGCGTCGACGTTCCGC 4755 || || || |||||||| | | |||||| |||||||| || |||||||| Sbjct 8113 GGCGTCCATCACGGCTCGGCGATCTACTTCAAACGTAACGTGCTATCGGCGACGTTCATT 8054 Query 4756 CCGCACCGCTGGCTGTCGCGGCACGCGTTCGAGCGGTGGGCGCTCGATTTCCTGACGTTC 4815 |||||| | | ||| |||| | | |||||| |||||||||||||||||| |||||| Sbjct 8053 CCGCACAGGTTGCTCACGCGCGAAGTGTTCGATAAGTGGGCGCTCGATTTCCTCACGTTC 7994 Query 4816 GGCAACGGCTATCTGGAACGCCGCCGCAACATGGTCGGCGGCACGCTGCGGCTCGAGCCC 4875 ||||| || ||||| || | || ||| | | ||||| |||| | |||||| Sbjct 7993 GGCAATGGGTATCTTGAGCTGCGAAAGAACCGGCTAGGCGGGCCGCTTGCGTTCGAGCGT 7934 Query 4876 GCGCTCGCGAAGTACGTCCGGCGCAAGGCCGA-TTTCAGCGGCTTCGTGTACGTGAACGG 4934 |||| || |||||| | || ||| | | || | |||| ||||| | || ||||| Sbjct 7933 GCGCCAGCCAAGTACATGCGCCGCGCGACGGACCTACAGC-GCTTCTATCAGGTCAACGG 7875 Query 4935 CTGGCAGGAGCGGCACGAGTTCGAGCCCGACAGCGTGTTCCAGCTCGTGCGGCCGGACAT 4994 ||||||| | ||||||||||| | ||| | |||| || | || |||||||| Sbjct 7874 GTGGCAGGCGTCGCACGAGTTCGCGGCCGGGACCGTGCATCACTTGATGGAACCGGACAT 7815 Query 4995 CAATCAGGAGGTCTATGGCCTGCCCGAGTATCTGAGCTCGCTGCACTCGGCCTGGCTGAA 5054 ||||||||||| |||||| ||||||| ||||| || | |||||| |||| ||| |||| Sbjct 7814 TAATCAGGAGGTGTATGGCTTGCCCGAATATCTCGGCGCCCTGCACGCGGCATGGTTGAA 7755 Query 5055 CGAATCGTCGACGCTGTTCCGGCGCAAGTATTACGAGAACGGCAGCCACGCCGGCTTCAT 5114 ||| ||| ||||||| || || || |||||||||||| || ||||| ||||| || Sbjct 7754 CGAGTCGGCGACGCTATTTCGCCGGCGGTATTACGAGAATGGTTCGCACGCGGGCTTTAT 7695 Query 5115 CCTGTACATGACCGACGCCGCGCAGAAGCAGGACGACGTGGACA 5158 |||||||||||| || || |||||| ||| ||| || |||| Sbjct 7694 CCTGTACATGACGGATGCGGCGCAGTCGCAAACCGATGTCGACA 7651 Score = 226 bits (250), Expect = 6e-55 Identities = 205/258 (79%), Gaps = 0/258 (0%) Strand=Plus/Minus Query 5229 CGGGAAGAAGGACGGCATCCAGCTCATTCCCGTGTCCGAGGTCGCCGCGAAGGACGAGTT 5288 ||| ||||| ||||| ||||||||||||||||| ||||||||| | ||||| |||||||| Sbjct 7580 CGGCAAGAAAGACGGTATCCAGCTCATTCCCGTTTCCGAGGTCACGGCGAAAGACGAGTT 7521 Query 5289 CTTCAACATCAAGAACGTGACGCGCGACGATCTGCTCGCCGCGCACCGCGTGCCGCCGCA 5348 ||||| |||||||| || ||||||||||| ||||||| ||||| ||| | || ||||| Sbjct 7520 TTTCAATATCAAGAATGTCACGCGCGACGACTTGCTCGCGGCGCATCGCATCCCCCCGCA 7461 Query 5349 GTTGCTCGGCATCGTGCCGAGCAATTCGGGCGGGTTCGGCACGCCGGATACCGCCGCGCG 5408 | | | || ||||||||||||||| | ||||| || ||| || | || || ||||| Sbjct 7460 GCTCATGGGGATCGTGCCGAGCAATACCGGCGGATTTGGCGCGGCCGACACGGCCGCCGA 7401 Query 5409 TGTGTTCGGGCGCAACGAAATCAGGCCGCTACAGGCGCGCTTCGCCGAGCTGAACGACTG 5468 || |||||||| || |||||| || || || ||| |||||| |||| || ||||| Sbjct 7400 GGTATTCGGGCGTAATGAAATCGAACCCCTGCAACGGCGGTTCGCCCAGCTCAATGACTG 7341 Query 5469 GCTCGGCGACGAGGTCGT 5486 | ||||||||||||| || Sbjct 7340 GATCGGCGACGAGGTTGT 7323 Score = 134 bits (148), Expect = 3e-27 Identities = 245/355 (69%), Gaps = 4/355 (1%) Strand=Plus/Minus Query 18361 ATGTGCGCGATCAGGACCTTCGCGAGCGCGTCGCCGACGATCGGCGCCAGCGAGTAGCGC 18420 || ||||||||| || |||||||| |||||| ||| |||| || || || Sbjct 10035 ATATGCGCGATCGCGATTTTCGCGAGGGCGTCGGCGATCGCCGGCTTGAGGCTGTGCCGG 9976 Query 18421 CCGGCGATCGCGTGGACGATCGAGCCGATCGTCTGTCGATGCCAGCTCTTCTCGCGGCGC 18480 ||||||||| | | ||||||| ||||| ||| | | ||||||||| ||| || Sbjct 9975 CCGGCGATCTTGCGCACGATCGGGCCGAGCGTTTCGCCGTGCCAGCTCGCCTCCTTTCGT 9916 Query 18481 TCCTGCATGCCGCTCGTCATCGCGGCCGAGCGCGCGCGGATGGTGACGATGTCCGGCGCG 18540 || | |||| | | ||||||| |||||||||||| || ||||||| ||| |||| || Sbjct 9915 TCGTCCATGTCCTTGGTCATCGAGGCCGAGCGCGCCCGAATGGTGAGGATATCCGCGCCG 9856 Query 18541 CCGCTGTGCTCGACTTCGTTCACAACGAAGCTGCCCTTGTCGACGA-GCGGCTCGCCGGC 18599 ||||||||||| || |||| || ||| |||||||||||||| || | | ||| Sbjct 9855 CCGCTGTGCTCTACCTCGTCGACGGTAAAGGCGCCCTTGTCGACGACGCCGGT-ATCGGA 9797 Query 18600 CCATCCGATCGACGCCTTGATCGTCGCGCCGCGCTTCGGAATGTCCAGATCGTTTTTCGA 18659 ||| |||| |||| | | | |||||||||| || || | || | | | Sbjct 9796 CCAGCCGAACGACACGCGCAGCACGGCGCCGCGCTCGGGGATCGCAAGCCGGCCGTCTGC 9737 Query 18660 GTCGTCGAGCACGATATCGATGGTGTCCGCCTCGT--CGGAGCGCGACTCCGAAA 18712 || | || |||||||||| |||| || |||| || ||||||||| |||| Sbjct 9736 ATCATTGACGACGATATCGAGCATGTCGGCTTCGTCGCGCCGCGCGACTCGGAAA 9682 Score = 120 bits (132), Expect = 7e-23 Identities = 217/313 (69%), Gaps = 7/313 (2%) Strand=Plus/Minus Query 16050 GCCAGCCGCAGGAGAAAAAGAAAAC--AATGGATCAGAAGTTCAGTGGTGAGGTCGGGCA 16107 ||||||||| ||| || |||| |||| | ||||| |||| || | ||||||| Sbjct 11615 GCCAGCCGCGTTGGAAGAATAAAAAGTAATGCAACAGAAATTCAACGGGAACATCGGGCA 11556 Query 16108 GGTTGCCGGCCGGGACGTTAAAAACAGCGGTGCACAAGCAAGCGTCAACATTCACCTGCA 16167 ||||| ||||| | || || | | | || ||| | | ||| | | | || | || Sbjct 11555 AGTTGCAGGCCGCCATGTCAAGACGAATAGCGCGCAATCCAACGTAAGCGTGCATATCCA 11496 Query 16168 CAACGGGGTGGAATCAAAGCGGTATATCAGTGATCGCCAACGACGTGCGATTGGCGCGAA 16227 ||||| | || | | | || ||||| ||||| || || ||||||| | | || | Sbjct 11495 CAACGAACCGAAACCGA---GTTACATCAGCGATCGTCAGCGTAGTGCGATCG-CACGCA 11440 Query 16228 AGTCTT-TGAGCTTGAAGCAAAGACGGGCGTCGAAAAGCTGATGGTGTACCGGCGTTTGA 16286 || | | | || | |||| |||||| ||| ||||||||||| || ||||| |||| Sbjct 11439 AGGCGTATCAGATCCAAGCCAAGACGCAGACCGACAAGCTGATGGTCTATCGGCGCTTGA 11380 Query 16287 TGACCAGATTCAAGTTCCGGAGCATGGACGAGATGCCGCGCGAACTGTTCGAGCGGGTGA 16346 ||||| |||||||| | || ||||||||||||||||||||| ||| | |||| | | Sbjct 11379 TGACCGTGTTCAAGTTTCCGAACATGGACGAGATGCCGCGCGACGTGTACCAGCGTGCAA 11320 Query 16347 TGCGGTATCTCGA 16359 || |||||||| Sbjct 11319 TGTCATATCTCGA 11307 >seq1165 Length=30767 Score = 288 bits (318), Expect = 2e-73 Identities = 314/416 (75%), Gaps = 2/416 (0%) Strand=Plus/Minus Query 7034 CAGCAAGTACGGCGCCAACGGAGCGAGCTTTATCGAATTTTCTTCTACGATTGCCCGCCG 7093 |||| ||||| | | ||| | || ||||| || ||| |||||||||||||||| ||| Sbjct 30095 CAGCGCGTACGAGGTGAGCGGCGGGACCTTTAGCGCATTCTCTTCTACGATTGCCCACCG 30036 Query 7094 TTGGACAAGAAAATGCACAATCCGATCAGCAAACAAGCGATCGATTTTGGCAAGTCTACC 7153 ||||| |||||||| |||||||| ||||||||||| || | |||||||||||||| | Sbjct 30035 TTGGAGAAGAAAATACACAATCCAATCAGCAAACAGGCAGTGGATTTTGGCAAGTCCGCA 29976 Query 7154 GAAGCCGCATTTCGGCTCGCACTTCATCAGCACTTGCGCGGGATGCGTAAGGTCGCCCTT 7213 ||||| ||||||| || | | | || ||| |||| || ||||| || || || ||| Sbjct 29975 GAAGCGACATTTCGACTGGAATTGCACGGGCATCTGCGGGGCATGCGCAAAGTTGCGCTT 29916 Query 7214 CGCCTTGGGCACCTCTCGGCCTTCACTCAATGGGCGATAAAGCCCGACAAAGTTGGTCTC 7273 || || |||||||| ||||| | || || ||| | || ||||| | ||||| | Sbjct 29915 CGGCTCGGGCACCTTTCGGCGT--ACACAGTGGACCATCAAGCCAGCTAAAGTCGCGGAA 29858 Query 7274 TTGCTCGCAGGCAAGATGCAGATGGCTGACCTCACCCCTGAAGATGTGATGGTTGATGTT 7333 | || | |||| ||| ||||||| || || | || |||||| ||| || || || Sbjct 29857 CTACTGTCGGGCAGGATTCAGATGGGCGATCTGTCGCCGGAAGATATGACAGTAGACATT 29798 Query 7334 CGACAGAAGGGCGTCGACATGCGCATCGGACTGGACGTCTCATCGTTGGCGTTCAAGAAG 7393 || ||||||||||| |||||||| ||||| ||||||| || || ||||||||||| | Sbjct 29797 CGCCAGAAGGGCGTAGACATGCGTATCGGTGTGGACGTGTCGTCCTTGGCGTTCAAAAGA 29738 Query 7394 CAGGTGGATCAGATCGTATTGATTGCCGGCGACGCGGATTTCGTGCCGGCCGCAAA 7449 ||||| || ||||| |||||||| ||||||||||| ||||| || ||||| || || Sbjct 29737 CAGGTAGACCAGATTGTATTGATCGCCGGCGACGCCGATTTTGTTCCGGCAGCCAA 29682 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 114155054671482