Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physarum_20polycephalum_20[genbank_20GCA_5F000413255.3_202014-06-30] 69,687 sequences; 205,175,886 total letters Query= NC_009235.2 Length=48674 Score E Sequences producing significant alignments: (Bits) Value seq3735 601 1e-167 seq3196 147 7e-31 seq2291 122 3e-23 >seq3735 Length=6689 Score = 601 bits (666), Expect = 1e-167 Identities = 736/999 (74%), Gaps = 4/999 (0%) Strand=Plus/Minus Query 40615 ATGAGCGAGCGCCCGATCCTTCATGTCGTCTCATTGTCCGGCGGCAAGGACAGTACCGCG 40674 |||| || |||||||| || || |||||||| ||||||||||||||||||| || || Sbjct 3148 ATGATCGCGCGCCCGACACTCCACGTCGTCTCGATGTCCGGCGGCAAGGACAGCACGGCT 3089 Query 40675 ACGCTGTGCGTCGCACTCGAACAGCACGGTTCGGAGAACGTGCGTGCTGTGATGGCGGAT 40734 || | ||||||| |||||| |||||| ||||||| || ||| | || || Sbjct 3088 ACCGCGCTCGTCGCAATCGAACTGCACGGCCGGGAGAACTGCCGATTCGTGTTCGCCGAC 3029 Query 40735 ACCGGAAACGAGGATGAGCAGAACCTCGAATACGCGCTCGACTATTTGCCTCGCGCGCTC 40794 ||||| |||||| | || || || |||||||| |||||| |||| ||||| ||| Sbjct 3028 ACCGGCAACGAGCACGAATCGACATACGCCTACGCGCTGGACTATCTGCCGCGCGCACTC 2969 Query 40795 GGTATCCCGGTGGACGTAGTGCGGGCCGACTTCACTGACGAATTTGCGACAAAGCGAGCG 40854 ||||| |||| ||||| ||||| |||||||| | ||||| || || || ||||| ||| Sbjct 2968 GGTATAACGGTCGACGTGGTGCGAGCCGACTTTGCCGACGAGTTCGCAACGAAGCGCGCG 2909 Query 40855 AACCTTGCGCGGATCGCCGCCGGCGAACCTGAGTCAGCCGTGTACGGCAAGCGCGAGTTC 40914 ||||| || ||||||||||| || || || ||||| || || ||||| || |||| Sbjct 2908 AACCTCGCACGGATCGCCGCGGGTGAGCCGGAGTCGGCGGTCTACGGGCGCCGGAAGTTT 2849 Query 40915 ATGTACCGCTGGACGCCCGAGGCGGCCGCACGAGCGCTTGAAGTGCTACATCCGACCGGA 40974 ||| | |||||||| ||| |||||||| ||||| ||||| || ||||||||||| Sbjct 2848 CAGTATCACTGGACGCGGGAGCTCGCCGCACGCGCGCTGGAAGTACTGCATCCGACCGGT 2789 Query 40975 ATCCCATTCCTTGACCTTTGCCTTGTCCGCGGCGGATTTCCATCACGCAAGCGGCAGTTC 41034 || || || || || || ||| | ||||| || || ||||| || |||||||| |||||| Sbjct 2788 ATTCCGTTTCTCGATCTGTGCATGGTCCGTGGTGGCTTTCCCTCGCGCAAGCGCCAGTTC 2729 Query 41035 TGCACGCAGTACCTGAAGACCGAGCAACTTGTCGGCTACGCATTGCGTGAG-ATCGACCG 41093 || || | || ||||| ||||| | ||| || ||||| | || | | |||||| Sbjct 2728 TGTACCGAATATCTGAAAACCGAACCACTGACCGAGTACGCGCT-CGCGCGCATCGACGA 2670 Query 41094 CGGTTACGCGGTGTGGTCGTGGCAGGGCGTTCGCATTGACGAGAGCGATTCGCGTCGAGA 41153 || | ||||| ||||||||||||||||| || || || || ||||| || || || Sbjct 2669 AGGGCATGCGGTTTGGTCGTGGCAGGGCGTGCGGATAGATGAAAGCGAGTCCCGAAGATC 2610 Query 41154 GCGTCTTCAGGGTACGGGCGCGTGCGTGAAGGCATTCGAGGTGGTCGGCGGCGGCCTTTT 41213 | || |||||||| || || || || |||||||| || ||||| ||||| || | Sbjct 2609 CAGGCTGCAGGGTACCGGTGCTTGTGTCCGAGCATTCGAAGTAGTCGGAGGCGGTCTCTC 2550 Query 41214 CAATTACCGCCCCATTCTGCGCTGGAGTGCCGCCGACGTATTCGAGGCGCACGCTGCGGC 41273 || || || || |||||||| |||| | | | |||| ||||| || ||||| ||| Sbjct 2549 CATCTATCGACCGATTCTGCGTTGGAACGTGGACAACGTCTTCGAAGCTCACGCGCTGGC 2490 Query 41274 CGGCATTCGACCAAATCCGCTGTACCGGCAAGGCATGTCGCGCGTTGGCTGCATGCCATG 41333 ||| || ||| |||||||||||| ||| |||||| | ||||| ||||||||||| || Sbjct 2489 CGGTATCGAACCGAATCCGCTGTACTTGCAGGGCATGACACGCGTCGGCTGCATGCCCTG 2430 Query 41334 CATCAAC-GCCGGGAAGTTGGAACTGCGAGAGATCGCGCGCCGGTTTCCCGAGCACGTCG 41392 ||||||| || | ||| || || || | ||| ||||| || || || | ||||||| Sbjct 2429 CATCAACTGCTCGAAAGCTG-AATTGGCCGCGATTGCGCGTCGATTCCCTCATCACGTCG 2371 Query 41393 AGCGCATTGCGGAATGGGAGCGTCTCGTGTCCGAAGTCTGCCGGCCGGGTAGCCCAGTCT 41452 || | || ||||||||||| |||| || |||||||| | | | |||||| | Sbjct 2370 CACGTGTAGCCGAATGGGAGCGAATCGTCTCGCTCGTCTGCCGTCGTGATTCCCCAGTGT 2311 Query 41453 CGTTCTTTCATCAGGGCACAACGGGCCATACGGGACAGGCGTCCACGATTTGGAAGGTCG 41512 |||| || || | ||||| |||||| | || || ||| | |||||| | | |||| Sbjct 2310 CGTTTTTCCACCGAGGCACGCAGGGCCACGCCGGCCAAGCGACAACGATTCTGGATGTCG 2251 Query 41513 TCGACTGGTCGAAGACGAGCCGCGGCGGCCGTCAATACGACCTTCTCGCGGACGCAGAAC 41572 | || ||| | ||||||| ||| |||||||| ||||||||| | ||||||||||| | || Sbjct 2250 TGGAGTGGGCCAAGACGACCCGGGGCGGCCGCCAATACGACTTACTCGCGGACGCGGCAC 2191 Query 41573 CTGCGACGGCATGCTCGTCCGCATACGGGCTCTGCGAAT 41611 | |||||||||||| |||| ||||| ||||| ||||||| Sbjct 2190 CGGCGACGGCATGCGCGTCTGCATATGGGCTGTGCGAAT 2152 >seq3196 Length=8014 Score = 147 bits (162), Expect = 7e-31 Identities = 359/535 (67%), Gaps = 43/535 (8%) Strand=Plus/Plus Query 43344 ACCCGCGCGGCGTGCGCCGCGAGTTGCGTTGCATGGCGAACTGC-GATCAATCGAGCTGC 43402 ||| ||||||||||||||||||||||||||||||| ||||| | || || |||| |||| Sbjct 4156 ACCTGCGCGGCGTGCGCCGCGAGTTGCGTTGCATGCGGAACTTCTGAACA-TCGAACTGC 4214 Query 43403 CCGACTGGTTGCCCGTCGACGCGTGGCTCGACTGGTGCGAGCACCGCGAGGCGAAAGCGG 43462 | | | | || | | || ||| || |||||||| |||||||| || ||| Sbjct 4215 CTGCAAGCATCCCGTTTGCCGTTTGGGACGCATGGTGCGAACACCGCGAAGCCAAAA--- 4271 Query 43463 CGGAGAAGTCGGCGCCGTGGACACGCCCGGCGGCGAAGGTGTCGCTGCGCCGCCTCGAGA 43522 | ||| || | |||||||| || ||||| || |||||| | | ||| Sbjct 4272 --GCAAAGACG-CTCCGTGGACGCGACCGGCTGCCCGCGTGTCGAT---------CAAGA 4319 Query 43523 AGCTGAGAGAGCTTGGGCATGCC---------CCGGCGGACTGCATCGACGAAGCGGTAC 43573 || || | ||| | |||| || | || | |||||||||| || | Sbjct 4320 AGTTGGAAATGCTCGCTGCTGCCGGCCAAAGCCCTGAGGTCACGGTCGACGAAGCAGTGC 4379 Query 43574 TGCGCGGCTGGACGGGGCTGTTCCCGGTGAAGCCGGACGGCACGGCGACGAGCGGGCAGG 43633 ||||||||||||| || ||||| ||||||||| | |||| | |||||| || |||| | Sbjct 4380 TGCGCGGCTGGACCGGTCTGTTTCCGGTGAAGGCTGACG---CCGCGACG-GCCGGCACG 4435 Query 43634 AC-------GTTCCTGCCGACTGGCACAAGAGCGCGCAAG-GTGTCACTGAC-CGCGGTA 43684 | ||| | ||||||||| |||| || ||| | | ||| | || || Sbjct 4436 GCCGCCGGTGTTGCCGCCGACTGGTGGAAGA--CCGAAAGCGGCTATCTGGCTCGTGGCC 4493 Query 43685 AGCAACTCGGCATCGAGCAGCGCG-AGGGCGAAGTGTTCATGCGTTTCAAGGCGCGCGTC 43743 |||| ||||||||||| | ||||| | | | | ||| || ||||||||||||||| Sbjct 4494 AGCAGCTCGGCATCGA-CCGCGCGAAATTCCAGTTCTTCGAGCAGTTCAAGGCGCGCGTC 4552 Query 43744 GTCAAGGCGGCCGGCCCAGGCGAGGCGATGGAGGAAATGCTGCGCGAGGCTGCCCGCTTC 43803 |||||| || ||||| ||||| |||||| || | |||||| || | ||| Sbjct 4553 TGCAAGGCAGCGGGCCCGGGCGAATGGATGGAAGAGCTTCTGCGCACGGTCGGTCGCGAA 4612 Query 43804 GGGAATGAGACCTACGAGCAGTTGTACCGGTACTTCAACGACATCCCGCGCGATC 43858 | | ||| |||||| | ||||| || |||||||| |||||||||||| Sbjct 4613 AGCGAAGAGCGCTACGAAGCGCTGTACGCATATTTCAACGAAGTCCCGCGCGATC 4667 >seq2291 Length=11769 Score = 122 bits (134), Expect = 3e-23 Identities = 514/799 (64%), Gaps = 21/799 (3%) Strand=Plus/Minus Query 41648 ATGGCCAAAAACTCAATCGACGTCTACGGGGCGTCGGGCAAGGGCAACGTCCTTTCGATG 41707 ||||| |||||| ||||||| ||||| || || ||||| |||||||||| | | Sbjct 3483 ATGGCAAAAAACAGCATCGACGCGTACGGCGCATCCGGCAAAAGCAACGTCCTCTATTTC 3424 Query 41708 GACCCTGACAAGCTGACGCTCGTCACGGACCCGAAGCACCCGCTGTACGACCGGCGCGTA 41767 || ||||| | |||||||||| ||| | | ||| ||||| |||||| ||||| Sbjct 3423 GATCCTGAGGTGTTGACGCTCGTGGAGGATCAGGCGCATCCGCTTTACGACTCTCGCGTG 3364 Query 41768 CATCAGGCGCCGAACCAGAAGACGGTTCGGAACTACCGGGCGCAGGGCGTGCTCGAGCCG 41827 |||| | ||| || |||| | ||| || ||| | | || || ||||| || || Sbjct 3363 CATCTGCCGCTCGACGAGAACATGGTGCGCAACATCATGTACCAAGGTGTGCTGCAGGCG 3304 Query 41828 GTGCTCTTCTACAAAGACCCGGAGACGGGCGAGAACCTCGTGATCGAC---GGCCGTCGC 41884 | || |||| | || ||||| ||| ||| ||| ||| | ||||| | Sbjct 3303 ATCGAGGTCAACAAGAATCCCGAGACAGGC---AACGTCGAAGTCGTCATGGGCCGGCAG 3247 Query 41885 CGAGTGATTAACGCGCGCGAGCTGAACCGTCAACTGATCGATGCGGGCGAAGAGCCGAT- 41943 || || | ||| || ||| ||||| | | |||| |||||| || |||| Sbjct 3246 CGTGTCAAAAACTGCCGGGAGGCTAACCGCCGTTTACGCGATCGGGGCGAGGAACCGAAG 3187 Query 41944 CACGATTCCGGCGATC---CCAAAGCGCGTTATGCGCGACAGCGACAAGTCGTTC-GTCG 41999 | || | ||||||||| | ||| | ||| ||| ||| | || | |||| Sbjct 3186 CTCG-TGCCGGCGATCGTGCGGAAGGTGGCGGCGCGTGACCGCGCGC--TTGTGCTGTCG 3130 Query 42000 GAATG-ATGGTCAGCACGAACGAGATCCGCGAAGAAGACTCGCCGATCAACCGGGCCGAG 42058 | | || ||| |||| || ||| || | || ||||| | || ||||| Sbjct 3129 GCCGCCACGGCAAGCGAAAACGCCATTCGCCAACAGGAAAGCCCGATAACGCGCGCCGAA 3070 Query 42059 AAGATGGCTCGCATGCTCGACG-TCGGCCACACCGAGGATGCTATCGCCGTCGCGTTCGG 42117 || ||||| || || | || |||| | |||||| | ||||| || |||||| Sbjct 3069 AAAATGGCGCGGCAACT-GTCGCTCGGTCGATCCGAGGCGGATATCGGAATCTTGTTCGG 3011 Query 42118 TGTCGAGGTGCCGACCGTGCGCTCTGCTTTGAAGCTGCTCGACTGCTGCATGGCGGTGCG 42177 ||||| ||| |||||||||| | | | | |||||||| |||||| || || | Sbjct 3010 TGTCGGTCTGCAGACCGTGCGCGCGTCGCTCGAACTGCTCGAATGCTGCGCTGCCGTTCA 2951 Query 42178 TGACGCTGTTGAGGCGGAACAGATCACTGTGTCGCACGCGCTGAAGCTTGCGAAGCTGTC 42237 || ||||| || |||| || | | || | || ||| | |||| ||||| || | Sbjct 2950 GGATGCTGTCGAAGCGGGGAAGGTGAACGTTACCCATGCGAAGCAGCTCGCGAAATTGAC 2891 Query 42238 GCCCGACGAGCAACGCGCGAAGGTTCAGGCGTTGATCGATGCCGCTGACGGCAAGGAAGG 42297 |||||| || || |||||||||||| | ||||||| |||| |||||| | || Sbjct 2890 GCCCGATGACCAGCGCGCGAAGGTTGCCGAATTGATCGCGGCCGGCGACGGCGTAAATGG 2831 Query 42298 GCACGCGCGCTCGCGTGCGCAGAAGGCCGTGCTCGGCGGTACGGC--GGCACGCGTACGT 42355 ||| | |||||||| ||| ||||||| | || | ||||| | | ||| | Sbjct 2830 GCATGAACGCTCGCGCAAACAGCGGGCCGTGATGGGTG--ACGGCAAGCCGCGCATGAAG 2773 Query 42356 CCGCGTAAGCAGATCGAGGCGGCGCTCGCGGAGGCGACGGGCGAGCGCTTGGCGGCACTG 42415 |||| | |||||||| || | | | | || | ||||||||| | || ||| Sbjct 2772 ACGCGCGCGAAGATCGAGAAGGAGTTGGAGACCGCCAAGGGCGAGCGAGCAGACGCCCTG 2713 Query 42416 CGATGGGTGCTCGGTATTG 42434 || ||||| |||||| ||| Sbjct 2712 CGGTGGGTCCTCGGTCTTG 2694 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 155506406716584