Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physarum_20polycephalum_20[genbank_20GCA_5F000413255.3_202014-06-30] 69,687 sequences; 205,175,886 total letters Query= NC_009236.1 Length=36690 Score E Sequences producing significant alignments: (Bits) Value seq2320 1003 0.0 >seq2320 Length=11620 Score = 1003 bits (1112), Expect = 0.0 Identities = 1467/2072 (71%), Gaps = 79/2072 (4%) Strand=Plus/Minus Query 3141 CCGCGCAA--CGAAATCAGCGACGAGCAGCACAAGCGCATCATCGAAGCGTTCCGCGATT 3198 |||||||| ||| |||||||||||||| | |||| | ||| || || | |||| Sbjct 9680 CCGCGCAAAACGAGTTCAGCGACGAGCAGGCCGAGCGGCTTCGCGAGGCCTTTCTTGATT 9621 Query 3199 CGCTGTTCGACTATCAGAAAGTCTGGTATCGGAACGGCGATCAGCGCACGCGCAACATCC 3258 |||||||||||||||| || |||||||||||| | || ||||||||||||||||||| | Sbjct 9620 CGCTGTTCGACTATCAAAAGGTCTGGTATCGGCAAGGGCATCAGCGCACGCGCAACATTC 9561 Query 3259 TGAAATCGCGGCAGATCGGTGCGACGTGGTACTTCGCGCGCGAGGCGCTCGTCGACGCCC 3318 | || |||||||||||||| ||||||||||| ||||| || ||||| || | |||||| Sbjct 9560 TCAAGTCGCGGCAGATCGGCGCGACGTGGTATTTCGCACGAGAGGCACTGGACGACGCGA 9501 Query 3319 TCGACACCGACCGTAATCAAATCTTCCTGTCGGCGAGCAAGGCTCAGGCGCACGTCTTCA 3378 || |||| ||| |||| || || |||||||| |||||||| || |||||||| |||| Sbjct 9500 TCACGACCGGCCGCGATCAGATTTTTCTGTCGGCCAGCAAGGCACACGCGCACGTTTTCA 9441 Query 3379 AGCAGTACATCACGCAGTTCGCGCGCGCGGCGGCCGACATCGAGCTCACGGGCGATCCGA 3438 ||||||||| ||||| ||||||| ||| ||||| ||||||| || ||||| |||| Sbjct 9440 CGCAGTACATTTGCCAGTTTGCGCGCGAGGCCGCCGATGTCGAGCTAACAGGCGACCCGA 9381 Query 3439 TCATCTTGCCGAGCGGCGCGACGCTGTACTTCCTGGGGACGAACGCGCGCACCGCGCAGT 3498 |||||||||||| | |||||| | ||| || || ||||||||||||||||| ||| Sbjct 9380 TCATCTTGCCGAATGAGGCGACGTTACGCTTTCTAGGCACGAACGCGCGCACCGCACAGA 9321 Query 3499 CGTACCACGGCAACTTCTACTTCGACGAATACTTTTGGGTTC-CGAAGTTCCGCGAGCTG 3557 || |||||||| ||||| |||||||||||||||||| | || | ||| |||||||| Sbjct 9320 GCTATCACGGCAATTTCTATTTCGACGAATACTTTTGGACTGGCGGATTTC-GCGAGCTG 9262 Query 3558 AACAAGGTCGCCTCCGGCATGGCGATGCAC-AAGCGCTGGCGCAAGACTTACTTCAGCAC 3616 || |||||||| || ||||||||||||||| || ||| | || || || ||| ||| Sbjct 9261 AATAAGGTCGCGTCGGGCATGGCGATGCACAAAAAAATGGAGAAAAACCTATTTCTCCAC 9202 Query 3617 GCCGTCCAGCGTCACGCACGAGGCGTACGCGTTCTGGAGCGGCGCGCACGCGAACCGCGG 3676 |||||| ||| | || | || || | |||||||| |||| |||| ||||| || Sbjct 9201 GCCGTCGAGCATTGGACATGCCGCCTATACCTTCTGGAGTGGCGAGCACTTCAACCGAGG 9142 Query 3677 CCGCGCCGCGGGCGAGC----GCATCCAGATCGACACGAGCCACGAGGCGCTCGTGCGCG 3732 |||||| || ||| | ||||| || || ||| | | ||||||||| ||| Sbjct 9141 CCGCGCAAAGGTCGATCATCTGCATCTGGA-CGTAACG---CGCAAGGCGCTCGCCGGCG 9086 Query 3733 GCATGTTGTGCGAGGACGCGCAGTGGCGGCAGATCGTGACCGTGCTCGATGCGATGGCGG 3792 || | |||||||| ||| ||||| |||||||||||||| ||||| | || | Sbjct 9085 GCCGTCTCTGCGAGGATAGGCAATGGCGCCAGATCGTGACCGTCGAGGATGCCGTCGCCG 9026 Query 3793 GCGGCTGCGACCTGTTCGACATCGACGAGCTGCGCCGCGAGTACAGCGCCGAGGAATTCG 3852 |||| |||||||||||||| |||| |||||| || | || |||||||| |||||| || Sbjct 9025 GCGGGTGCGACCTGTTCGATATCGGCGAGCTACGTCTTGAATACAGCGCGCAGGAATACG 8966 Query 3853 CGAATCTGCTCATGTGCCAGTTCATCGACGATTCGCTGTCGGTGTTCAAGCTGTCGGACC 3912 | |||||| | ||||||||||| ||||||||| | |||| | ||| ||| |||| Sbjct 8965 CCAATCTGTTGATGTGCCAGTTTATCGACGATACAGCGTCGATTTTCCCGCTCGCGGATT 8906 Query 3913 TGCAACGCTGCATGGTCGACTCGTGGGAAGAATGGGCGGACGACTTCTCGCNNNNNNNNN 3972 | || || ||||||||||| | || | ||| Sbjct 8905 TACAGCGTTGCATGGTCGATT--------------GC---------CCCGC--------- 8878 Query 3973 NNNNNNCGTTCGGCTATCGCGAGGTGTGGGTCGGCTACGATCCGGCGCTCACGGGCGACT 4032 | |||||||||||| | ||||||||||||| || || ||||| |||| |||| Sbjct 8877 -----CCTTTCGGCTATCGCCCGCTGTGGGTCGGCTATGACCCAGCGCTATCGGGTGACT 8823 Query 4033 CGGCGGGGCTCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCTTCCGCGTGCT-C 4091 |||| || | || |||||||| | Sbjct 8822 CGGCCGGCTTGAGCGTCGTCGCACCGCCGGCGGTGCCTGGGGGCAAGTTTCGCGTGCTGC 8763 Query 4092 GAACGTCATCAGTTCCGCGGCAACGACTTTGAGGAACAGGCCGCGGCAATCGAGGCGATC 4151 | || || | ||||||| || || |||| |||||||| ||| || |||||| Sbjct 8762 ACAAGT-GCCAATGGCGCGGCATGGATTTCGAGGCACAGGCCGAGGCGATACGCGCGATC 8704 Query 4152 ACGCAGCGCTACAACGTCGGCTACATCGCGATCGACACCACGGGCATGGGGCAAGGCGTC 4211 ||||||| |||||||||| ||| || |||||||| || || ||||| || || |||||| Sbjct 8703 ACGCAGCAATACAACGTCGCCTATATGGCGATCGATACGACAGGCATCGGCCAGGGCGTC 8644 Query 4212 TACCAGCTCGTGCGCAAGTTCTTCCCGGCCGCCGTCGCGCTGAACTACTCGCCCGAGGTG 4271 || |||||||| | |||||| ||| ||| |||||||| ||||| ||||| || || Sbjct 8643 TATCAGCTCGTCAGGCAGTTCTATCCGAACGCGGTCGCGCTCAACTATTCGCCAGAAGTT 8584 Query 4272 AAAACCCGCCTCGTGCTCAAGGGCCAGTCCGTCGTCCGGAACGGCCGCCTGCAATTCGAC 4331 || |||||| |||||||| ||| ||| || || | || ||||| || ||||||| Sbjct 8583 AAGGGCCGCCTGGTGCTCAAAGGCTTGTCGGTGATCGGTAAGGGCCGGCTCGAATTCGAT 8524 Query 4332 GCGGGCTGGACCGATCTGGCGGCGGCGTTCATGGCGAT---CAAACAGACGATGACGGCG 4388 || || ||||| || | ||| ||||||||||||| |||| || ||||||||| Sbjct 8523 GCCGGATGGACAGACTTAGCGCAATCGTTCATGGCGATTCGCAAA---ACCATGACGGCG 8467 Query 4389 AGCGGCCGTCAGGCGACCTACACCGCTGGCCGTACCGACGAGACGGGCCACGCCGACCTG 4448 ||||| | | || || || |||||| ||| | || || ||||| ||||| Sbjct 8466 AGCGGAAAGAAAGTCACTTATGAAGCGAGCCGTAACGAGCAAACAGGACACGCGGACCTT 8407 Query 4449 GCGTGGGCGTGCCTGCACGCGATCGACCGCGAGCCGCTCGCCGGCG--GCGGCATTCATT 4506 || |||||||||||||||||| ||| | ||| ||| | | |||| | || || | Sbjct 8406 GCCTGGGCGTGCCTGCACGCGCTCGGCAACGAACCGTTAGAAGGCGTCACCGCCAACAAT 8347 Query 4507 CATCTTCATTCACGGAGTTTTACGCATGAGCAAgcgccgatcgcgcgcgccgcgcacgtt 4566 | | | || | |||||| | ||||||||||| | | || |||||| | Sbjct 8346 -ACCGGC-TTTATGGAGTTCTCAAATTGAGCAAGCGC--AACATGCACGCCGCAC----- 8296 Query 4567 cgcggccgcgcccaatccga--gcgccggcagcgccg-cgccggcgcgcgccgAGGTCTT 4623 || |||| | ||| ||| | || || || ||||| || | ||||||| ||| Sbjct 8295 --CGCCCGCAC---TGTCGACTGCGGCCGCCCCGTCGACGCCGCCGAGGGCCGAGGCCTT 8241 Query 4624 CACGTTCGACGATCCGACGCCCGTCATGAACCGGGCCGAGATTCTCGATTACGTCGAGTG 4683 ||| |||| ||| || ||| || ||| |||| ||||||||||| || |||||||| Sbjct 8240 CACCTTCGGCGACGCGGTGCCAGTAATGGACCGCGCCGAGATTCTTGACTACGTCGAAAC 8181 Query 4684 CTGGTCGAACGGCGAATGGTTCGAGCCGCCGGTCAGCTTCGCCGGCCTGGCGAAATCGTT 4743 |||||| |||| | ||||||||||||||||| | | |||||||| ||| | || Sbjct 8180 GTGGTCGGCCGGCAACTGGTTCGAGCCGCCGGTGTCGTGGTCGGGCCTGGCTAAAACATT 8121 Query 4744 TCGCGCGAGCACGCACCATAGCTCGGCGCTGTTCTTCAAGGCGAACGTGCTGGCGTCGAC 4803 ||||| || || || |||||||| | | |||||| |||||||| || |||| Sbjct 8120 CCGCGCCGGCGTCCATCACGGCTCGGCGATCTACTTCAAACGTAACGTGCTATCGGCGAC 8061 Query 4804 ATTCCGCCCGCACCGCTGGCTGTCGCGGCACGCGTTCGAGCGGTGGGCGCTCGATTTCCT 4863 ||| |||||| | | ||| |||| | | |||||| |||||||||||||||||| Sbjct 8060 GTTCATTCCGCACAGGTTGCTCACGCGCGAAGTGTTCGATAAGTGGGCGCTCGATTTCCT 8001 Query 4864 GACGTTCGGCAACGGCTATCTGGAACGCCGCCGCAACATGGTCGGCGGCACGCTGCGGCT 4923 ||||||||||| || ||||| || | || ||| | | ||||| |||| | | Sbjct 8000 CACGTTCGGCAATGGGTATCTTGAGCTGCGAAAGAACCGGCTAGGCGGGCCGCTTGCGTT 7941 Query 4924 CGAGCCCGCGCTCGCGAAGTACGTACGGCGCAAGGCGGA-TTTCAGCGGCTTCGTGTACG 4982 ||||| |||| || |||||| | || ||| | |||| | |||| ||||| | | Sbjct 7940 CGAGCGTGCGCCAGCCAAGTACATGCGCCGCGCGACGGACCTACAGC-GCTTCTATCAGG 7882 Query 4983 TGAACGGCTGGCAGGAGCGGCACGAGTTCGCGCCCGACAGCGTGTTCCAGCTCGTGCGGC 5042 | ||||| ||||||| | ||||||||||||| ||| | |||| || | || | Sbjct 7881 TCAACGGGTGGCAGGCGTCGCACGAGTTCGCGGCCGGGACCGTGCATCACTTGATGGAAC 7822 Query 5043 CGGACATCAATCAGGAGGTCTATGGCCTGCCCGAGTATCTGAGCTCGCTGCACTCGGCCT 5102 ||||||| ||||||||||| |||||| ||||||| ||||| || | |||||| |||| | Sbjct 7821 CGGACATTAATCAGGAGGTGTATGGCTTGCCCGAATATCTCGGCGCCCTGCACGCGGCAT 7762 Query 5103 GGCTGAACGAATCGTCGACGCTGTTCCGGCGCAAGTATTACGAGAACGGCAGCCACGCCG 5162 || ||||||| ||| ||||||| || || || |||||||||||| || ||||| | Sbjct 7761 GGTTGAACGAGTCGGCGACGCTATTTCGCCGGCGGTATTACGAGAATGGTTCGCACGCGG 7702 Query 5163 GCTTCATCCTGTACATGACCGACGCCGCGCAG 5194 |||| |||||||||||||| || || |||||| Sbjct 7701 GCTTTATCCTGTACATGACGGATGCGGCGCAG 7670 Score = 214 bits (236), Expect = 4e-51 Identities = 202/258 (78%), Gaps = 0/258 (0%) Strand=Plus/Minus Query 5284 CGGGAAGAAGGACGGCATCCAGCTCATTCCCGTGTCCGAGGTCGCCGCGAAGGACGAGTT 5343 ||| ||||| ||||| ||||||||||||||||| ||||||||| | ||||| |||||||| Sbjct 7580 CGGCAAGAAAGACGGTATCCAGCTCATTCCCGTTTCCGAGGTCACGGCGAAAGACGAGTT 7521 Query 5344 CTTCAACATCAAGAACGTGACGCGCGATGACCTGCTCGCCGCACACCGCGTGCCGCCGCA 5403 ||||| |||||||| || |||||||| ||| ||||||| || || ||| | || ||||| Sbjct 7520 TTTCAATATCAAGAATGTCACGCGCGACGACTTGCTCGCGGCGCATCGCATCCCCCCGCA 7461 Query 5404 GTTGCTCGGCATCGTGCCGAGCAATTCGGGCGGGTTCGGCACGCCGGATACCGCTGCACG 5463 | | | || ||||||||||||||| | ||||| || ||| || | || || || || Sbjct 7460 GCTCATGGGGATCGTGCCGAGCAATACCGGCGGATTTGGCGCGGCCGACACGGCCGCCGA 7401 Query 5464 CGTGTTCGGGCGCAACGAAATCAGGCCGCTACAGGCACGCTTCGCCGAGCTGAACGACTG 5523 || |||||||| || |||||| || || || || |||||| |||| || ||||| Sbjct 7400 GGTATTCGGGCGTAATGAAATCGAACCCCTGCAACGGCGGTTCGCCCAGCTCAATGACTG 7341 Query 5524 GCTCGGCGACGAGGTCGT 5541 | ||||||||||||| || Sbjct 7340 GATCGGCGACGAGGTTGT 7323 Score = 131 bits (144), Expect = 4e-26 Identities = 244/355 (69%), Gaps = 4/355 (1%) Strand=Plus/Minus Query 19365 ATGTGCGCGATCAGGACCTTCGCGAGCGCGTCGCCGACGATCGGCGCCAGCGAGTAGCGC 19424 || ||||||||| || |||||||| |||||| ||| |||| || || || Sbjct 10035 ATATGCGCGATCGCGATTTTCGCGAGGGCGTCGGCGATCGCCGGCTTGAGGCTGTGCCGG 9976 Query 19425 CCGGCGATCGCGTGGACGATCGAGCCGATCGTCTGTCGATGCCAGCTCTTCTCGCGGCGC 19484 ||||||||| | | ||||||| ||||| ||| | | ||||||||| ||| || Sbjct 9975 CCGGCGATCTTGCGCACGATCGGGCCGAGCGTTTCGCCGTGCCAGCTCGCCTCCTTTCGT 9916 Query 19485 TCCTGCATGCCGCTCGTCATCGCGGCCGAGCGCGCGCGGATGGTGACGATGTCCGGCGCG 19544 || | |||| | | ||||||| |||||||||||| || ||||||| ||| |||| || Sbjct 9915 TCGTCCATGTCCTTGGTCATCGAGGCCGAGCGCGCCCGAATGGTGAGGATATCCGCGCCG 9856 Query 19545 CCGCTGTGCTCGACTTCGTTCACAACGAAGCTGCCCTTGTCGACGA-GCGGCTCGCCGGC 19603 ||||||||||| || |||| || ||| |||||||||||||| || | | ||| Sbjct 9855 CCGCTGTGCTCTACCTCGTCGACGGTAAAGGCGCCCTTGTCGACGACGCCGGT-ATCGGA 9797 Query 19604 CCATCCGATCGACGCCTTGATCGTCGCGCCGCGCTTCGGAATGTCCAGATCGTTTTTCGA 19663 ||| |||| |||| | | | |||||||||| || || | || | | | Sbjct 9796 CCAGCCGAACGACACGCGCAGCACGGCGCCGCGCTCGGGGATCGCAAGCCGGCCGTCTGC 9737 Query 19664 GTCGTCGAGCACGATATCGATGGTGTCCGCCTCGT--CGGAGCGCGATTCCGAAA 19716 || | || |||||||||| |||| || |||| || |||||| || |||| Sbjct 9736 ATCATTGACGACGATATCGAGCATGTCGGCTTCGTCGCGCCGCGCGACTCGGAAA 9682 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 117189341618888