Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physarum_20polycephalum_20[genbank_20GCA_5F000413255.3_202014-06-30] 69,687 sequences; 205,175,886 total letters Query= NC_009237.1 Length=37446 Score E Sequences producing significant alignments: (Bits) Value seq2971 105 2e-18 seq1462 84.2 5e-12 >seq2971 Length=8699 Score = 105 bits (116), Expect = 2e-18 Identities = 187/270 (69%), Gaps = 2/270 (1%) Strand=Plus/Minus Query 25573 TTCACGGCGTCCTTCAACCCCTTGCCGGCCTTGAACTTCGGCGCTTTCGAC-GCTGGAAT 25631 || ||||||||||| ||| ||||||| ||| ||||||| | || | | | | || ||||| Sbjct 4474 TTGACGGCGTCCTTGAACGCCTTGCCAGCCGTGAACTT-GACGGTCTTGGCAGCGGGAAT 4416 Query 25632 CTTGATTTCTTCGCCGGTTGCGGGATTGCGTCCGGTGCGGGCGGCCCGCGCGCCCACGCT 25691 |||||| ||||||||| |||||||| || || ||||| || ||| |||| | Sbjct 4415 CTTGATGGTTTCGCCGGTCTTCGGATTGCGGCCCGTACGGGCTGCGCGCTTGCCCGAACC 4356 Query 25692 GAATACGCCGAATCCCGTCAGCGTCACCGTGTCGCCCTTGCGCAGCGACTTCGTGATGCC 25751 ||| |||||| || ||||| |||| ||| ||||| || | |||| ||| | Sbjct 4355 GAAACTGCCGAAGCCGATCAGCTGAACCGCGTCACCCTTCGACACAGCCTTCTTGACCAC 4296 Query 25752 TTCGAGAACGGCTTCCAGCGCAAAGCCGGAGTCGGCTTTCGTCAGGCCCGTTTCCGCTGC 25811 |||||| | | ||||||| ||||| | || || | |||||| | ||||| Sbjct 4295 TTCGAGGAGCGTGTCCAGCGTCTCGCCGGTTTGTGCCTTGCTAGCGCCCGTCTGTGCTGC 4236 Query 25812 CACGTGATTGATCAGGTCCGATTTGTTCAT 25841 ||| | |||||| ||| ||| ||||| Sbjct 4235 GACGGCGTCGATCAGTTCCTGTTTATTCAT 4206 >seq1462 Length=20089 Score = 84.2 bits (92), Expect = 5e-12 Identities = 118/161 (73%), Gaps = 6/161 (4%) Strand=Plus/Plus Query 25573 TTCACGGCGTCCTTCAACCCCTTGCCGGCCTTGAACTTCGGCGCT-TTCGACGCTGGAAT 25631 ||||| || ||||| ||| ||||||||||| ||||||| | || | |||| || | ||| Sbjct 17589 TTCACTGCATCCTTGAACGCCTTGCCGGCCGTGAACTT-GACGGTCTTCGCGGCGGCAAT 17647 Query 25632 CTTGATTTCTTCGCCGGTTGCGGGATTGCGTCCGGTGCGGGCGGCCCGCGCGCCCACGCT 25691 || |||||| | ||||| || ||||| || || || || ||||| || | || | Sbjct 17648 CTGGATTTCCGCACCGGTGGCTGGATTCCGCCCAGTCCGCGCGGCACGTTCACC--TGTG 17705 Query 25692 GAATACG--CCGAATCCCGTCAGCGTCACCGTGTCGCCCTT 25730 ||| ||| ||||| || ||| | |||||||||||| || Sbjct 17706 GAAAACGACCCGAAGCCGATCAACTGCACCGTGTCGCCTTT 17746 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 119606539650752