Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Physarum_20polycephalum_20[genbank_20GCA_5F000413255.3_202014-06-30]
69,687 sequences; 205,175,886 total letters
Query= NC_009237.1
Length=37446
Score E
Sequences producing significant alignments: (Bits) Value
seq2971 105 2e-18
seq1462 84.2 5e-12
>seq2971
Length=8699
Score = 105 bits (116), Expect = 2e-18
Identities = 187/270 (69%), Gaps = 2/270 (1%)
Strand=Plus/Minus
Query 25573 TTCACGGCGTCCTTCAACCCCTTGCCGGCCTTGAACTTCGGCGCTTTCGAC-GCTGGAAT 25631
|| ||||||||||| ||| ||||||| ||| ||||||| | || | | | | || |||||
Sbjct 4474 TTGACGGCGTCCTTGAACGCCTTGCCAGCCGTGAACTT-GACGGTCTTGGCAGCGGGAAT 4416
Query 25632 CTTGATTTCTTCGCCGGTTGCGGGATTGCGTCCGGTGCGGGCGGCCCGCGCGCCCACGCT 25691
|||||| ||||||||| |||||||| || || ||||| || ||| |||| |
Sbjct 4415 CTTGATGGTTTCGCCGGTCTTCGGATTGCGGCCCGTACGGGCTGCGCGCTTGCCCGAACC 4356
Query 25692 GAATACGCCGAATCCCGTCAGCGTCACCGTGTCGCCCTTGCGCAGCGACTTCGTGATGCC 25751
||| |||||| || ||||| |||| ||| ||||| || | |||| ||| |
Sbjct 4355 GAAACTGCCGAAGCCGATCAGCTGAACCGCGTCACCCTTCGACACAGCCTTCTTGACCAC 4296
Query 25752 TTCGAGAACGGCTTCCAGCGCAAAGCCGGAGTCGGCTTTCGTCAGGCCCGTTTCCGCTGC 25811
|||||| | | ||||||| ||||| | || || | |||||| | |||||
Sbjct 4295 TTCGAGGAGCGTGTCCAGCGTCTCGCCGGTTTGTGCCTTGCTAGCGCCCGTCTGTGCTGC 4236
Query 25812 CACGTGATTGATCAGGTCCGATTTGTTCAT 25841
||| | |||||| ||| ||| |||||
Sbjct 4235 GACGGCGTCGATCAGTTCCTGTTTATTCAT 4206
>seq1462
Length=20089
Score = 84.2 bits (92), Expect = 5e-12
Identities = 118/161 (73%), Gaps = 6/161 (4%)
Strand=Plus/Plus
Query 25573 TTCACGGCGTCCTTCAACCCCTTGCCGGCCTTGAACTTCGGCGCT-TTCGACGCTGGAAT 25631
||||| || ||||| ||| ||||||||||| ||||||| | || | |||| || | |||
Sbjct 17589 TTCACTGCATCCTTGAACGCCTTGCCGGCCGTGAACTT-GACGGTCTTCGCGGCGGCAAT 17647
Query 25632 CTTGATTTCTTCGCCGGTTGCGGGATTGCGTCCGGTGCGGGCGGCCCGCGCGCCCACGCT 25691
|| |||||| | ||||| || ||||| || || || || ||||| || | || |
Sbjct 17648 CTGGATTTCCGCACCGGTGGCTGGATTCCGCCCAGTCCGCGCGGCACGTTCACC--TGTG 17705
Query 25692 GAATACG--CCGAATCCCGTCAGCGTCACCGTGTCGCCCTT 25730
||| ||| ||||| || ||| | |||||||||||| ||
Sbjct 17706 GAAAACGACCCGAAGCCGATCAACTGCACCGTGTCGCCTTT 17746
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 119606539650752
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |