Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physarum_20polycephalum_20[genbank_20GCA_5F000413255.3_202014-06-30] 69,687 sequences; 205,175,886 total letters Query= NC_009382.1 Length=38760 Score E Sequences producing significant alignments: (Bits) Value seq2320 536 3e-148 seq3201 161 2e-35 seq1664 96.9 9e-16 seq1359 93.3 1e-14 seq1165 86.0 2e-12 seq2851 84.2 5e-12 seq1360 84.2 5e-12 >seq2320 Length=11620 Score = 536 bits (594), Expect = 3e-148 Identities = 1042/1526 (68%), Gaps = 70/1526 (5%) Strand=Plus/Plus Query 2968 GAACCGCACCACCTCGTCACCGATCCAATCGTTGA--TTGCCAACAGGCGGTCCTGCAGG 3025 ||| || || |||||||| |||||||| || |||| | | | | || || |||||| Sbjct 7316 GAAGCGAACAACCTCGTCGCCGATCCAGTCATTGAGCTGGGCGAACCGCCGT--TGCAGG 7373 Query 3026 GGCTTCACCTCGTTGCGCGCGAACACCATCGCCGCCTTCTCCACGTCGCCGAATCCGCCG 3085 || | | || || ||| |||| ||| || ||| | || | |||| ||||||||| Sbjct 7374 GGTTCGATTTCATTACGCCCGAATACCTCGGCGGCCGTGTCGGCCGCGCCAAATCCGCCG 7433 Query 3086 GTGTTGTTCGGAATGATGCCCATGAGCTGCGGCGGTACGCGGTGCGCGGCGAGCTGGTCG 3145 || ||| |||| | ||| |||||||||||||| || | ||| ||||| |||||| |||| Sbjct 7434 GTATTGCTCGGCACGATCCCCATGAGCTGCGGGGGGATGCGATGCGCCGCGAGCAAGTCG 7493 Query 3146 TCGCGCGTGACGTTCTTGATGTTCCAGAACTCGTCCTTCGCGGCCACCTCGGACACCGGT 3205 ||||||||||| |||||||| || | |||||||| ||||| | |||||||| || || Sbjct 7494 TCGCGCGTGACATTCTTGATATTGAAAAACTCGTCTTTCGCCGTGACCTCGGAAACGGGA 7553 Query 3206 AGCAACTGGATCCCATCCTTCTTGCCATTGGGCGCGTACATGAACAGGTTGCGGAAATTG 3265 | | |||||| || || |||||||| || |||||||||||||||||||| ||||||||| Sbjct 7554 ATGAGCTGGATACCGTCTTTCTTGCCGTTCGGCGCGTACATGAACAGGTTTCGGAAATTG 7613 Query 3266 CCCGGCCCCTTGGCACTCTTCATCGCCTCGCGCAGCGTGTCGACGTCCTCCTGCTTCTGC 3325 || ||||||||| | |||| ||||||||||| ||||||| || ||| |||| Sbjct 7614 CCTGGCCCCTTGCTGTTTTTCAACGCCTCGCGCATGTTGTCGACATCGGTTTGCGACTGC 7673 Query 3326 GCCGCATCGGTCATGTACAGGATGAAGCCGGCGTGCGAGCCGTTCTTGTAGTACCGGCGC 3385 |||||||| |||||||||||||| ||||| |||||||| || |||| ||| ||||| || Sbjct 7674 GCCGCATCCGTCATGTACAGGATAAAGCCCGCGTGCGAACCATTCTCGTAATACCGCCGG 7733 Query 3386 CGGAACAGCGTGGCCGATTCGTTCAACCACGTGGCGTTCAGCGCGGACAGGTATTCCGGC 3445 || || ||||| ||||| ||||||||||| | |||| ||| ||| || ||||| ||| Sbjct 7734 CGAAATAGCGTCGCCGACTCGTTCAACCATGCCGCGTGCAGGGCGCCGAGATATTCGGGC 7793 Query 3446 AGGCCGTACACCTCCTGATTGATGTCCGGTTCCTGGAGGTGGAACACCGAGCCGGCGGCG 3505 | ||| |||||||||||||| |||||||||||| | ||| ||| | ||||| ||| Sbjct 7794 AAGCCATACACCTCCTGATTAATGTCCGGTTCCATCAAGTGATGCACGGTCCCGGCCGCG 7853 Query 3506 AA--GGTG-TACGGCTGCTGCCAGTT---CTGCACaaaaaaaTAGGTGTTCAGGTCGAGC 3559 || ||| ||| |||| || ||| ||| | | || | ||| ||||| | Sbjct 7854 AACTCGTGCGACGCCTGCCACCCGTTGACCTG----ATAGAAGCGCTGT--AGGTCCGTC 7907 Query 3560 CCGCGCCGAACGTACTTGGCCAGAGGCGTGTCGAGCCGGATTGTCCCGCCCAACACGTTT 3619 |||| || | ||||||||| | | |||| | | | |||||| | | ||| Sbjct 7908 GCGCGGCGCATGTACTTGGCTGGCGCACGCTCGAACGCAAGCGGCCCGCCTAGCCGGTTC 7967 Query 3620 TCGCGGCGCTCCAGGTACGCATTGCCGAACACCTGCCAGTCCAGCACCAGGCGCTCGAAC 3679 | || |||| || ||| ||||||||||| | | || ||| || |||||| Sbjct 7968 TTTCGCAGCTCAAGATACCCATTGCCGAACGTGAGGAAATCGAGCGCCCACTTATCGAAC 8027 Query 3680 GTCGCGCGCGACAACAGCGGGTGCGGGATGAACGT-GCTGACCAGGATATTCCGCTTCAC 3738 |||||| | || | |||||| |||||||| || || || | || || || | Sbjct 8028 ACTTCGCGCGTGAGCAACCTGTGCGGAATGAACGTCGCCGA-TAGCACGTTACGTTTGAA 8086 Query 3739 GTAGACGGCCGAGCTGTGGTGCGCGGCGGCGCGGAACGAGCGCGCCAGGCCATCCCACGG 3798 ||||| ||||||| ||| || || |||||||||| | |||||||| ||||| Sbjct 8087 GTAGATCGCCGAGCCGTGATGGACGCCGGCGCGGAATGTTTTAGCCAGGCCCGACCACGA 8146 Query 3799 CATGGGCGGTTCATACCACTGGCCCATGCGCATGCAC---TCGACGTAATCCAGCAACTC 3855 || ||||| || |||| | ||| | | ||| |||||||| || || | ||| Sbjct 8147 CACCGGCGGCTCGAACCAGTTGCC---GGCCGACCACGTTTCGACGTAGTCAAGAATCTC 8203 Query 3856 GCGCCGGTCCAGCACTTCGACGGGATCGCCGAAAGAGAACACCTCGGCTTGCGCGGCCCG 3915 | ||||||| ||| || | |||||||| | ||| ||||||| || Sbjct 8204 GGCGCGGTCCATTACTGGCACCGCGTCGCCGAAGGTGAAGGCCTCGGC--------CC-- 8253 Query 3916 GTCGGTGTGGTGCTCGGTCGGTGCATCGGTGTTGGCGGTGCGCACGTGGGCAGATGCcgc 3975 |||| | || |||| ||| ||||| |||| || | || | Sbjct 8254 -TCGGCG----GC---GTCG-----ACGG----GGCGG-CCGCA-GTCGACA------GT 8288 Query 3976 gcgcgcggcgcggcgGGTCTTGTTGCG---GCTCA---TGAAATCTCCAGGATGCTGGTA 4029 ||| |||| |||||| | | ||||||| ||||| ||| | ||||| | || |||| Sbjct 8289 GCGGGCGGTGCGGCGTG-CATGTTGCGCTTGCTCAATTTGAGAACTCCATAAAGCCGGTA 8347 Query 4030 TTGGTGGTGGTGACGCCTTCGAGCGGTTCGTGCGAAAGCGCATGCATGCAGGCCCACGCC 4089 ||| ||| |||||||||||| | |||||||| ||||| |||| ||| ||||| || Sbjct 8348 TTGTTGGCGGTGACGCCTTCTAACGGTTCGTTGCCGAGCGCGTGCAGGCACGCCCAGGCA 8407 Query 4090 AGGTCGGCGTGGCTGGTGTCCTCCGAGCGGCCGGCCTGATAGGTGACGCGNNNNNNNNNN 4149 ||||| ||||| | || | ||| |||| || | ||| ||||| Sbjct 8408 AGGTCCGCGTGTCCTGTTTGCTCGTTACGGCTCGCTTCATAAGTGACTTTCTTTCCGCTC 8467 Query 4150 NNNNNNNNNNNNNNNNNNATGGACATGAACGACGCGGCGAAGTCCGTCCAGCCGGCGTCG 4209 || | ||||||||| || ||||| ||||| ||||| ||| Sbjct 8468 GCCGTCATGGTTTTGCGAATCGCCATGAACGATTGCGCTAAGTCTGTCCATCCGGCATCG 8527 Query 4210 AACTCCAGCCTGCCCTTGCTGATCA-CGTCGTGCGCCTTGAGCACCAGGGCGGTTTTCAC 4268 || || |||| |||||| | ||||| || | || | |||||||||||| | || || Sbjct 8528 AATTCGAGCCGGCCCTTACCGATCACCGACAAGC-CTTTGAGCACCAGGCGGCCCTTAAC 8586 Query 4269 GTCCACGGAATAGGTGAAGCCTTCGGCATCCGGACGGAACTTCTGCACCAGGCGGAACAC 4328 || |||||| ||| | | || | |||| ||||| | || || | | || Sbjct 8587 TTCTGGCGAATAGTTGAGCGCGACCGCGTTCGGATAGAACTGCCTGACGAGCTGATAGAC 8646 Query 4329 CGCATCGCCGATGCCGGTCCGGTCGATGCCCACGTAGGCGACGTCGTAGCGCTCAGCGA- 4387 | | ||||||||| ||| ||||| ||| |||||||||| ||| ||| | || Sbjct 8647 GCCCTGGCCGATGCCTGTCGTATCGATCGCCATATAGGCGACGTTGTATTGCTGCGTGAT 8706 Query 4388 CGCGCCGGATGGCGCCGGCCTGTTCCTCGTAGTCGATGCCGCGGAACTGGTGCCGCTCCA 4447 |||| || || || |||||||| ||||| | || |||||||| | ||| | | || Sbjct 8707 CGCG-CGTATCGCCTCGGCCTGTGCCTCGAAATCCATGCCGCGCCATTGGCACTTGTGCA 8765 Query 4448 GCACGCGGAACTTGCCGCCCGGTACC 4473 ||||||| |||||||| || || ||| Sbjct 8766 GCACGCGAAACTTGCCCCCAGGCACC 8791 Score = 399 bits (442), Expect = 5e-107 Identities = 531/731 (73%), Gaps = 6/731 (1%) Strand=Plus/Plus Query 4629 CGCGAGCGGAAACACCGACGCGTTGTCGTCGATGAATACGCACATGAGCAGGTTGGCGAA 4688 ||||||||| || | |||||| | |||||||| || |||||| | ||| |||||| | Sbjct 8910 CGCGAGCGGGAAAATCGACGCTGTATCGTCGATAAACTGGCACATCAACAGATTGGCGTA 8969 Query 4689 ATCGAGTTCGCTGTACTCCAGGCGCAGCTGGTCGAGGTCGAACAGGTTGCAGCCGCCGCG 4748 || | ||||||| || || || |||| | ||| |||||||||| ||| |||||| Sbjct 8970 TTCCTGCGCGCTGTATTCAAGACGTAGCTCGCCGATATCGAACAGGTCGCACCCGCCGGC 9029 Query 4749 GAGCGCATCCTCCACCGTCACGATTTGGCGCCACTGGCCGTCCGCGCAGCGCATGCCGTC 4808 || |||||||| || |||||||| |||||||| || | ||| ||||| | |||| | Sbjct 9030 GACGGCATCCTCGACGGTCACGATCTGGCGCCATTGCCTATCCTCGCAGAGACGGCCGCC 9089 Query 4809 GCGAAGCGCGGCGTGGCTCAGGTCGAGCTTGATCTGTTTGTCCTTGGCCTTGCCGCGGTT 4868 | ||||| | | | | ||| || | | || | | |||| || ||| ||||| Sbjct 9090 GGCGAGCGCCTTGCGCGTTACGTCCAGATGCAGATGATCGACCTTTGCGCGGCCTCGGTT 9149 Query 4869 GAACAGTGCGCCGGACCAGAACGGATAGGCCTCATGCGACAAGCTGGACGGCGTGGAGAA 4928 ||| | |||| |||||| | |||||| |||| | ||| |||||||||||||| Sbjct 9150 GAAGTGCTCGCCACTCCAGAAGGTATAGGCGGCATGTCCAATGCTCGACGGCGTGGAGAA 9209 Query 4929 GTAGGTCTGACGCCAGTGCTT-GTGGATCGCCATGCCGGAGGCGACCTTGCGCAGTTCCT 4987 ||||| | | ||| | || ||| ||||||||||| || |||||||| ||| || Sbjct 9210 ATAGGTTTTTCTCCATTTTTTTGTGCATCGCCATGCCCGACGCGACCTTATTCAGCTCGC 9269 Query 4988 GGAAGCGCGGCAC-CCAGAAGTATTCATCGAAGTACAGGTTGCCGTGATACGACTGCGCG 5046 | || | || || ||| |||||||| ||||| || | ||||||||||| ||| ||| Sbjct 9270 GAAATC-CGCCAGTCCAAAAGTATTCGTCGAAATAGAAATTGCCGTGATAGCTCTGTGCG 9328 Query 5047 GTGCGGGCGTTCGTGCCGAGAAAGTAGAGCGTGGCGCCGTTGGGCAGCACCATCGGATCG 5106 ||||| ||||||||||| |||||| | ||| || | || |||| | ||||| ||| Sbjct 9329 GTGCGCGCGTTCGTGCCTAGAAAGCGTAACGTCGCCTCATTCGGCAAGATGATCGGGTCG 9388 Query 5107 CCCTTCAGCTCGATCCCGGCCGCGTCCTTGGCGAACTGGATGATGTATTGCTTGAAGACG 5166 || | ||||||| |||| || || || |||||| ||||| ||| |||| ||| Sbjct 9389 CCTGTTAGCTCGACATCGGCGGCCTCGCGCGCAAACTGGCAAATGTACTGCGTGAAAACG 9448 Query 5167 TGCGCCTGCGCCTTGCTGGCCGATAGGAAAATCTGGTTGCGGCCGGTGGTCAGCGCGTCG 5226 ||||| || |||||||||||||| || |||||||| | ||||||||| || | ||||||| Sbjct 9449 TGCGCGTGTGCCTTGCTGGCCGACAGAAAAATCTGATCGCGGCCGGTCGTGATCGCGTCG 9508 Query 5227 ATGAACGCCTCGCGTGCGAAGTACCACGTCGCGCCGATCTGCCGGCTCTTGAGCAGGTTG 5286 | ||||| |||||||| ||||||||||||||||||||||| |||||| | |||| Sbjct 9509 TCCAGTGCCTCTCGTGCGAAATACCACGTCGCGCCGATCTGCCGCGACTTGAGAATGTTG 9568 Query 5287 CGGATGCGCTCGACCTGCCCAGCCTCGTACCAGACGCGCTGGTAATCGAACATCGAGTCG 5346 || |||||| || ||||| | |||||||| || || ||||||| ||| || Sbjct 9569 CGCGTGCGCT-GA--TGCCCTTGCCGATACCAGACCTTTTGATAGTCGAACAGCGAATCA 9625 Query 5347 CGGAAGGCCTC 5357 | |||||||| Sbjct 9626 AGAAAGGCCTC 9636 >seq3201 Length=8002 Score = 161 bits (178), Expect = 2e-35 Identities = 126/151 (83%), Gaps = 7/151 (5%) Strand=Plus/Minus Query 26211 GGTTCATCGAGGAATTCCGGGGAACGCGGCGCGGATCTTGAGGAAGAAGTATTCCTCGTC 26270 |||||||||||| | |||||||| |||||||||||||||||||||||||||||||| || Sbjct 3884 GGTTCATCGAGGTTTACCGGGGAATGCGGCGCGGATCTTGAGGAAGAAGTATTCCTCATC 3825 Query 26271 GCGGTACCCGTAAGCCCGACGTTTGATGACCTTGAT-------GGTGTTGTTGATGCCTT 26323 ||||||||||||| | | || |||||||||||||| |||||||||||| |||| Sbjct 3824 GCGGTACCCGTAAACTCTGCGCTTGATGACCTTGATCGTGTTCGGTGTTGTTGATCCCTT 3765 Query 26324 CGACGACGCTGGTGTTGAGCGGGTGGCGGCA 26354 | |||| ||| || ||||| || || ||||| Sbjct 3764 CAACGATGCTCGTATTGAGTGGATGACGGCA 3734 >seq1664 Length=17032 Score = 96.9 bits (106), Expect = 9e-16 Identities = 67/76 (88%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 26223 AATTCCGGGGAACGCGGCGCGGATCTTGAGGAAGAAGTATTCCTCGTCGCGGTACCCGTA 26282 ||| |||||||||||||||||||| |||||||| | ||| ||||||||||| ||||||| Sbjct 7427 AATGCCGGGGAACGCGGCGCGGATTTTGAGGAATATGTACGCCTCGTCGCGGCACCCGTA 7486 Query 26283 AGCCCGACGTTTGATG 26298 |||||| |||| |||| Sbjct 7487 AGCCCGGCGTTCGATG 7502 >seq1359 Length=23342 Score = 93.3 bits (102), Expect = 1e-14 Identities = 97/127 (76%), Gaps = 8/127 (6%) Strand=Plus/Plus Query 36831 TGGCGCGCCCGGCTGGGATCGAACCAGCAACCCCTGCCTTCGGAGTTTTGGCGACGGGCC 36890 |||||||||||||||| |||||||||||||||||||||||||||| | | | || Sbjct 23202 TGGCGCGCCCGGCTGGTATCGAACCAGCAACCCCTGCCTTCGGAG----GACTATCTGCA 23257 Query 36891 AAGACCCT----TTATAAATCAAGGCCTTGCGCAACTCGCGAACTGCAAAACCAAGGCTG 36946 || | || || ||||||| ||||| | |||||||| || | |||| |||||||| Sbjct 23258 TAGTCACTTTTCTTTAAAATCAATGCCTTACACAACTCGCAAAGTTGAAAATCAAGGCTG 23317 Query 36947 CACAAGG 36953 | || || Sbjct 23318 CGCAGGG 23324 >seq1165 Length=30767 Score = 86.0 bits (94), Expect = 2e-12 Identities = 50/52 (96%), Gaps = 0/52 (0%) Strand=Plus/Plus Query 36831 TGGCGCGCCCGGCTGGGATCGAACCAGCAACCCCTGCCTTCGGAGTTTTGGC 36882 ||||||||||||||||||||||||||||||||||||||||||||| ||| || Sbjct 29620 TGGCGCGCCCGGCTGGGATCGAACCAGCAACCCCTGCCTTCGGAGCTTTAGC 29671 >seq2851 Length=9118 Score = 84.2 bits (92), Expect = 5e-12 Identities = 46/46 (100%), Gaps = 0/46 (0%) Strand=Plus/Plus Query 36830 TTGGCGCGCCCGGCTGGGATCGAACCAGCAACCCCTGCCTTCGGAG 36875 |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1772 TTGGCGCGCCCGGCTGGGATCGAACCAGCAACCCCTGCCTTCGGAG 1817 >seq1360 Length=23310 Score = 84.2 bits (92), Expect = 5e-12 Identities = 46/46 (100%), Gaps = 0/46 (0%) Strand=Plus/Minus Query 36830 TTGGCGCGCCCGGCTGGGATCGAACCAGCAACCCCTGCCTTCGGAG 36875 |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1688 TTGGCGCGCCCGGCTGGGATCGAACCAGCAACCCCTGCCTTCGGAG 1643 Score = 84.2 bits (92), Expect = 5e-12 Identities = 46/46 (100%), Gaps = 0/46 (0%) Strand=Plus/Minus Query 36830 TTGGCGCGCCCGGCTGGGATCGAACCAGCAACCCCTGCCTTCGGAG 36875 |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 18885 TTGGCGCGCCCGGCTGGGATCGAACCAGCAACCCCTGCCTTCGGAG 18840 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 123807860039468