Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physarum_20polycephalum_20[genbank_20GCA_5F000413255.3_202014-06-30] 69,687 sequences; 205,175,886 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq418 131 4e-25 seq1429 91.5 3e-13 >seq418 Length=100115 Score = 131 bits (144), Expect = 4e-25 Identities = 258/377 (68%), Gaps = 11/377 (3%) Strand=Plus/Minus Query 333611 CTTCATGATGGCACGGTCCTTCGAAGTGATACCCTCGAGGAACCCGGGCTCGGGGAACTT 333670 ||| | |||||| | |||||| || ||| |||||| | ||| || || || || | || Sbjct 20712 CTTGAGGATGGCTCTGTCCTTGGACTTGACACCCTCCAAGAATCCAGGGTCCGGAAGTTT 20653 Query 333671 CCACG--TGGTCTTCGTCTCGGTAAGGGCGTAGTA--ACTCGCTGATTCGGGACGCTTCT 333726 | | ||| | | || ||| || | |||||| ||| | | ||||| | ||| Sbjct 20652 GAAGGCTTGGACGT--TCGCGGAGAGCGAGTAGTAGGACTTG--GCCTCGGGGTGGGTCT 20597 Query 333727 TCACGAACTCGGACAGATTTCCCTTGTACTTCTTCAGCTTTAGGTTAGGTTCGTAATGGA 333786 |||||||||| || || || |||||||| |||| ||||| | | | ||||| |||| Sbjct 20596 TCACGAACTCCGAGAGGTTACCCTTGTAGGTCTTGAGCTTGCGCT---GCTCGTAGTGGA 20540 Query 333787 TAATAGAGGTGCAAACAGCGTCGAGGAACCCGGAGTCGTGTGACACAATCACGCACGAAA 333846 || | ||| || |||||| |||| |||||||||| ||||| || | || | | Sbjct 20539 CGATGTGCGAGCACACGTCGTCGATGAACGCGGAGTCGTGCGACACGATGATGCTTGTCA 20480 Query 333847 CGTCCTTAAGGTTGATCAGGTATTCAATCAGCCACCTCACGTTAGACACAGAAAGATGGT 333906 ||||||| || | | ||||| | | ||||| ||||| |||||| | || | Sbjct 20479 CGTCCTTCAGACCGGTGAGGTACTTGGTGAGCCAGGCGACGTTGGACACATCCAAGTGAT 20420 Query 333907 TGGTCGGCTCGTCAAGAAGTAGTAGCTTTGCGTTCAGGAGCATTGCACGTGCAAGAGCGA 333966 | || |||||||| || || || | | || | || |||||| ||||| || || ||| Sbjct 20419 TTGTGGGCTCGTCGAGGAGAAGGATATCGGCCTCCATGAGCATCGCACGGGCGAGCTCGA 20360 Query 333967 GTTTCATTTTCCACCCT 333983 | ||||||||||| ||| Sbjct 20359 GCTTCATTTTCCAACCT 20343 >seq1429 Length=23345 Score = 91.5 bits (100), Expect = 3e-13 Identities = 265/403 (66%), Gaps = 10/403 (2%) Strand=Plus/Minus Query 243327 TATTCTGTTTTCCGGGAGTTTCTGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCC 243386 |||||| ||||||| |||||||| || ||||| ||| || ||| | ||| | |||| Sbjct 8199 TATTCT--TTTCCGGCAGTTTCTGTGCTATCTTCTGGTTGAAGAAGAGAGGATTAATGCT 8142 Query 243387 TGGCCTCGGTCTGTCTAACGAGTTCATCAGTCGCGACGAGGGCCTTCACCAACAGTTCGG 243446 ||| | | | ||||| |||||||| ||||| || || || ||| | |||| Sbjct 8141 TGGATTGGCGCAATCTAATGAGTTCATTTCCCGCGATGAAGGTCTCCACTGCGACTTCGC 8082 Query 243447 TGAGCTTATGTATTCAAAGCTCCAGAACAAGCT---ACCATTCGAAACGGTCAAACAAAT 243503 | || | || || | |||| ||||| || |||| || || | ||| || Sbjct 8081 TTGCCTCCTTTACTCTATGCTCTCCAACAAACTGAAACCA---GAGACCCTAAAATCGAT 8025 Query 243504 CATCACAGAAGCAGTTGAAAACGAAAAGGAATTCATTTGCGACGCTATTCCATGCCGGCT 243563 ||| || || || | || || || || || || || | || | || Sbjct 8024 TATCTATGATGCGGTAGCCGTAGAGAAAGAGTTTATCACAGAGGCCCTACCGGTCGCCCT 7965 Query 243564 TATTGGCATGAACTCTGAACTCATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTT 243623 ||||| |||||| | ||| |||| | || |||||||||||||| || || || |||| Sbjct 7964 GATTGGAATGAACGCCGAAGCCATGAGCCAATACATCGAATTCGTCGCTGATCGACTTTT 7905 Query 243624 CATCGCGCTTGGTTATGAGAAAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAGCT 243683 | |||||||| | || || |||||| |||| ||||| || | || ||||| || Sbjct 7904 ACTGGCGCTTGGGCACCCCAAGGTCTACAACGCCAAAAACCCATTCGACTGGATGGAACT 7845 Query 243684 CATTTCGCT-TCAAGGGAAAACTAACTTCTTCGAAAAGCGTGT 243725 ||| ||| | || | | || || ||||| ||||| | ||||| Sbjct 7844 CATCTCGTTGTCCA-GAAAGACGAACTTTTTCGAGAGCCGTGT 7803 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1101895277393450