Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Physarum_20polycephalum_20[genbank_20GCA_5F000413255.3_202014-06-30]
69,687 sequences; 205,175,886 total letters
Query= NC_010240.1
Length=169794
Score E
Sequences producing significant alignments: (Bits) Value
seq6776 122 9e-23
seq146 98.7 1e-15
seq22 89.7 6e-13
>seq6776
Length=2740
Score = 122 bits (134), Expect = 9e-23
Identities = 156/215 (73%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 41994 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 42053
|||| ||||| |||| ||| |||||| || || ||||| || | || || || |
Sbjct 1427 CGCAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCC 1368
Query 42054 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTG 42113
|| || |||||||| || ||||| || || ||||||||||| | || | || |||||||
Sbjct 1367 TCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTG 1308
Query 42114 TCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATG 42173
||| ||| || || | || | | ||||||||||| ||||| || | || |||
Sbjct 1307 TCCTGGATCTTGGCCTTCACATTCTCGATCGTGTCGCTCGGCTCCACCTCCAGCGCGATC 1248
Query 42174 GTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208
|| ||||| || |||||||| || ||||| |||||
Sbjct 1247 GTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCAT 1213
>seq146
Length=178297
Score = 98.7 bits (108), Expect = 1e-15
Identities = 152/213 (71%), Gaps = 8/213 (4%)
Strand=Plus/Plus
Query 41999 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 42058
|||||| || | ||| |||||| ||||||||||| || || || || |||| ||
Sbjct 157699 CACCAAGTGGAGGGTGGACTCCTTCTGAATATTGTAGTCGCTGAGGGTGCGTCCGTCCTC 157758
Query 42059 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCAT 42118
|| ||||| |||||||| ||||| ||||| ||||| | || | | |||||||| | |
Sbjct 157759 GAGTTGCTTTCCAGCGAAGATGAGGCGCTGTTGGTCAGGGGGAATTCCCTCCTTGT-CTT 157817
Query 42119 GATTTTTTGT-TTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGG 42174
|| | ||||| |||| || | | ||||| |||| || || || | ||||||||
Sbjct 157818 GAATCTTTGTCTTGACGCTCTCGATGGTGTCAGAGCTC---TCGACCTCCAACGTGATGG 157874
Query 42175 TTTTGCCCGTTAGCGTCTTTACAAAGATTTGCA 42207
| || || || || || || ||||| || ||||
Sbjct 157875 TCTTTCCAGTGAGTGTTTTCACAAAAATCTGCA 157907
>seq22
Length=338851
Score = 89.7 bits (98), Expect = 6e-13
Identities = 149/214 (70%), Gaps = 6/214 (3%)
Strand=Plus/Plus
Query 41999 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 42058
|||||| ||||| ||| |||||||||||||||||| || | || || || | || ||
Sbjct 331320 CACCAAGTGCAAGGTGGACTCCTTTTGAATATTGTAGTCGGAGAGGGTGCGTCCATCCTC 331379
Query 42059 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCAT 42118
|| ||||| || ||||| || || || || ||||| | || | | ||||||||
Sbjct 331380 GAGTTGCTTTCCGGCGAAGATAAGGCGTTGTTGGTCAGGGGGGATTCCTTCCTTGTCTTG 331439
Query 42119 GATTTTTTGTTTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGT 42175
||| ||| || | || | | || || |||| || || || | ||||||||
Sbjct 331440 GATCTTTGTCTTCACGCTCTCGATGGTATCAGAGCTC---TCGACCTCCAAGGTGATGGT 331496
Query 42176 TTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 42209
|| || || || ||||| || ||||||||||||
Sbjct 331497 CTTTCCGGTGAGGGTCTTGACGAAGATTTGCATT 331530
Score = 87.8 bits (96), Expect = 2e-12
Identities = 146/210 (70%), Gaps = 6/210 (3%)
Strand=Plus/Plus
Query 41999 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 42058
|||||| ||||| |||||||||||||| || ||||| || | || || || |||| ||
Sbjct 330912 CACCAAGTGCAAGGTGCTCTCCTTTTGGATGTTGTAGTCGGAGAGGGTGCGTCCGTCCTC 330971
Query 42059 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCAT 42118
|||||||| || ||||| || | || || ||||| | || | | |||||||||
Sbjct 330972 GAGCTGCTTTCCGGCGAAGATCAAGCGTTGTTGGTCAGGGGGGATTCCTTCCTTGTCCTG 331031
Query 42119 GATTTTTTGTTTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGT 42175
||| || || | || | | || || |||| || || |||| ||||||||
Sbjct 331032 GATCTTGGTCTTCACACTCTCGATGGTATCGGAGCTC---TCTACTTCGAGGGTGATGGT 331088
Query 42176 TTTGCCCGTTAGCGTCTTTACAAAGATTTG 42205
||||| || | ||||| || ||||| ||
Sbjct 331089 CTTGCCAGTCAAGGTCTTCACGAAGATCTG 331118
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 542739614120080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |