Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physarum_20polycephalum_20[genbank_20GCA_5F000413255.3_202014-06-30] 69,687 sequences; 205,175,886 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq6776 122 9e-23 seq146 98.7 1e-15 seq22 89.7 6e-13 >seq6776 Length=2740 Score = 122 bits (134), Expect = 9e-23 Identities = 156/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 41994 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 42053 |||| ||||| |||| ||| |||||| || || ||||| || | || || || | Sbjct 1427 CGCAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCC 1368 Query 42054 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTG 42113 || || |||||||| || ||||| || || ||||||||||| | || | || ||||||| Sbjct 1367 TCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTG 1308 Query 42114 TCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATG 42173 ||| ||| || || | || | | ||||||||||| ||||| || | || ||| Sbjct 1307 TCCTGGATCTTGGCCTTCACATTCTCGATCGTGTCGCTCGGCTCCACCTCCAGCGCGATC 1248 Query 42174 GTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || ||||| || |||||||| || ||||| ||||| Sbjct 1247 GTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCAT 1213 >seq146 Length=178297 Score = 98.7 bits (108), Expect = 1e-15 Identities = 152/213 (71%), Gaps = 8/213 (4%) Strand=Plus/Plus Query 41999 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 42058 |||||| || | ||| |||||| ||||||||||| || || || || |||| || Sbjct 157699 CACCAAGTGGAGGGTGGACTCCTTCTGAATATTGTAGTCGCTGAGGGTGCGTCCGTCCTC 157758 Query 42059 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCAT 42118 || ||||| |||||||| ||||| ||||| ||||| | || | | |||||||| | | Sbjct 157759 GAGTTGCTTTCCAGCGAAGATGAGGCGCTGTTGGTCAGGGGGAATTCCCTCCTTGT-CTT 157817 Query 42119 GATTTTTTGT-TTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGG 42174 || | ||||| |||| || | | ||||| |||| || || || | |||||||| Sbjct 157818 GAATCTTTGTCTTGACGCTCTCGATGGTGTCAGAGCTC---TCGACCTCCAACGTGATGG 157874 Query 42175 TTTTGCCCGTTAGCGTCTTTACAAAGATTTGCA 42207 | || || || || || || ||||| || |||| Sbjct 157875 TCTTTCCAGTGAGTGTTTTCACAAAAATCTGCA 157907 >seq22 Length=338851 Score = 89.7 bits (98), Expect = 6e-13 Identities = 149/214 (70%), Gaps = 6/214 (3%) Strand=Plus/Plus Query 41999 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 42058 |||||| ||||| ||| |||||||||||||||||| || | || || || | || || Sbjct 331320 CACCAAGTGCAAGGTGGACTCCTTTTGAATATTGTAGTCGGAGAGGGTGCGTCCATCCTC 331379 Query 42059 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCAT 42118 || ||||| || ||||| || || || || ||||| | || | | |||||||| Sbjct 331380 GAGTTGCTTTCCGGCGAAGATAAGGCGTTGTTGGTCAGGGGGGATTCCTTCCTTGTCTTG 331439 Query 42119 GATTTTTTGTTTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGT 42175 ||| ||| || | || | | || || |||| || || || | |||||||| Sbjct 331440 GATCTTTGTCTTCACGCTCTCGATGGTATCAGAGCTC---TCGACCTCCAAGGTGATGGT 331496 Query 42176 TTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 42209 || || || || ||||| || |||||||||||| Sbjct 331497 CTTTCCGGTGAGGGTCTTGACGAAGATTTGCATT 331530 Score = 87.8 bits (96), Expect = 2e-12 Identities = 146/210 (70%), Gaps = 6/210 (3%) Strand=Plus/Plus Query 41999 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 42058 |||||| ||||| |||||||||||||| || ||||| || | || || || |||| || Sbjct 330912 CACCAAGTGCAAGGTGCTCTCCTTTTGGATGTTGTAGTCGGAGAGGGTGCGTCCGTCCTC 330971 Query 42059 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCAT 42118 |||||||| || ||||| || | || || ||||| | || | | ||||||||| Sbjct 330972 GAGCTGCTTTCCGGCGAAGATCAAGCGTTGTTGGTCAGGGGGGATTCCTTCCTTGTCCTG 331031 Query 42119 GATTTTTTGTTTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGT 42175 ||| || || | || | | || || |||| || || |||| |||||||| Sbjct 331032 GATCTTGGTCTTCACACTCTCGATGGTATCGGAGCTC---TCTACTTCGAGGGTGATGGT 331088 Query 42176 TTTGCCCGTTAGCGTCTTTACAAAGATTTG 42205 ||||| || | ||||| || ||||| || Sbjct 331089 CTTGCCAGTCAAGGTCTTCACGAAGATCTG 331118 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 542739614120080