Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physarum_20polycephalum_20[genbank_20GCA_5F000413255.3_202014-06-30] 69,687 sequences; 205,175,886 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq6776 111 2e-19 seq22 102 8e-17 seq59190 98.7 1e-15 seq146 98.7 1e-15 seq2782 96.9 3e-15 seq62579 87.8 2e-12 seq30454 86.0 6e-12 >seq6776 Length=2740 Score = 111 bits (122), Expect = 2e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 |||||||||| | ||||| || || | ||| || || || || |||||||| || | | Sbjct 1439 CCGCCGCGCAGGCGCAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCCGAG 1380 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | ||||| | || || |||||||||||||| | || || ||||||||||| || || Sbjct 1379 AGCGTGCGGCCCTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGCGGG 1320 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCAC-CGGCGTCCAC 64395 || || || || || || || || ||| ||| ||| | || || | |||| ||||| Sbjct 1319 ATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCGATCGTGTCGCTCGGC-TCCAC 1261 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | | | ||||||||||||| || || ||||| || ||||| Sbjct 1260 CTCCAGCGCGATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCAT 1213 >seq22 Length=338851 Score = 102 bits (112), Expect = 8e-17 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || || || || || |||||||| || | |||||| | || ||||||||||| ||| Sbjct 331561 GTGGACTCCTTCTGGATGTTGTAGTCGCTCAAGGTGCGTCCATCCTCAAGCTGCTTTCCG 331620 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| | || | ||||| |||||||| || || || || || ||||| || || ||| Sbjct 331621 GCAAAGATCAAACGCTGTTGGTCGGGGGGGATGCCCTCCTTGTCTTGGATCTTGGTCTTC 331680 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 || ||| | |||||| | || || |||| ||| | |||||| |||||||| || Sbjct 331681 ACGCTCTCGATGGTATCAGAGCTCTCGACCTCTAAAGTGATGGTCTTTCCGGTCAAGGTC 331740 Query 64427 TTTACGAAAAT 64437 || |||||||| Sbjct 331741 TTGACGAAAAT 331751 Score = 98.7 bits (108), Expect = 1e-15 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||| | |||| || || || || || |||||||| || | || |||||| | || Sbjct 331882 AGCACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGACCATCC 331941 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || ||||||||||| || | || || || || ||||| || || |||||||| || ||| Sbjct 331942 TCGAGCTGCTTGCCAGCGAAGATAAGGCGTTGTTGGTCAGGGGGGATTCCTTCCTTGTCT 332001 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || ||| ||| || ||| | |||||| | || || || | |||| ||| Sbjct 332002 TGGATCTTTGTCTTCACGCTCTCGATGGTATCAGAGCTCTCGACCTCCAACGTTATAGTC 332061 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTG 64440 ||||| || | ||| || ||||| || || Sbjct 332062 TTGCCAGTGAGAGTCTTGACGAAGATCTG 332090 Score = 87.8 bits (96), Expect = 2e-12 Identities = 143/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||| || |||| || || || || ||||||||||| || | | ||| | | || Sbjct 332217 AGCACAAGGTGAAGGGTGGACTCCTTCTGAATGTTGTAGTCAGAAAGGGTCCTTCCATCC 332276 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || || |||||||| || ||||||| || || ||||| || || ||||| || || || Sbjct 332277 TCGAGTTGCTTGCCAGCGAAAATGAGACGTTGTTGGTCAGGGGGGATTCCCTCCTTGTCC 332336 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || ||| ||| ||| | || ||| | || || || | ||| | |||| Sbjct 332337 TGGATCTTAGTCTTGACACTCTCGATAGTGTCAGAGCTCTCGACCTCCAAAGTAATGGTC 332396 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAAT 64437 || || || | ||| || |||||||| Sbjct 332397 TTTCCTGTGAGAGTCTTCACGAAAAT 332422 >seq59190 Length=243 Score = 98.7 bits (108), Expect = 1e-15 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||| || || | || || || ||||| |||||||| || | | || || | || Sbjct 243 AGCACGAGGTGGAGGGTGGACTCCTTTTGGATGTTGTAGTCAGAAAGAGTACGTCCATCC 184 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || |||||||| || || | ||||| ||||| ||||||||||| ||||| ||||| ||| Sbjct 183 TCGAGCTGCTTTCCAGCGAAGATGAGACGCTGTTGGTCGGGAGGGATTCCCTCTTTGTCT 124 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || ||| ||| ||| | || ||| || || || || | || | ||| Sbjct 123 TGGATCTTGGTCTTGACACTCTCGATAGTGTCAGAGGACTCGACCTCAAGGGTAATTGTC 64 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || || || | || || |||||||| ||||| Sbjct 63 TTACCCGTGAGGGTCTTGACGAAAATCTGCAT 32 >seq146 Length=178297 Score = 98.7 bits (108), Expect = 1e-15 Identities = 138/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || || || |||||||||||||| || | || |||||| | || || || ||||| ||| Sbjct 157392 GTGGACTCCTTTTGAATGTTGTAGTCGGAGAGGGTGCGTCCATCCTCGAGTTGCTTTCCG 157451 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 || | ||||| || || ||||| || |||||||| || || ||||| || || |||| Sbjct 157452 GCGAAGATGAGGCGTTGTTGGTCAGGGGGAATTCCCTCCTTGTCTTGAATCTTAGTCTTT 157511 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 || ||| | || ||| | || ||||| | ||| | |||||||| || | || Sbjct 157512 ACGCTCTCAATGGTGTCAGAGCTCTCGACTTCGAGAGTAATAGTCTTGCCAGTGAGGGTC 157571 Query 64427 TTTACGAAAATTTG 64440 || ||||| || || Sbjct 157572 TTAACGAAGATCTG 157585 >seq2782 Length=10868 Score = 96.9 bits (106), Expect = 3e-15 Identities = 152/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290 |||||| | |||| || || ||||| |||||||||||||| | | ||| || |||| Sbjct 9158 AAGCACCAAGTGAAGGGTGGACTCTTTCTGAATGTTGTAATCAGAAAGGGTACGTCCGTC 9217 Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350 || || ||||| || ||| | ||||| || || ||||| || || |||||||| || || Sbjct 9218 CTCTAGTTGCTTTCCAGCAAAGATGAGGCGTTGTTGGTCAGGGGGGATTCCTTCCTTGTC 9277 Query 64351 TTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410 || || || |||||| ||| | |||||| | || || || | || | || Sbjct 9278 CTGGATCTTAGTCTTTACGGACTCGATGGTATCAGAGCTCTCGACCTCCAAGGTAATTGT 9337 Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTTAA 64448 ||| || || | || || |||||||| | || |||| Sbjct 9338 CTTACCAGTGAGGGTCTTGACGAAAATCTAAATATTAA 9375 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||| | |||| || || || || || ||||||||||| | || ||| || | || Sbjct 9779 AGCACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAATCAGAGAGGGTACGTCCATCC 9838 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || || |||||||||||| | || || || || ||||| || ||||||||||| || || Sbjct 9839 TCTAGTTGCTTGCCGGCAAAGATAAGACGTTGTTGGTCAGGGGGAATTCCTTCCTTGTCC 9898 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || ||| || ||| | || || | ||||| || | || | |||| Sbjct 9899 TGGATCTTGGTCTTCACGGACTCGATGGTGTCTGAGCTCTCCACCTCGAGGGTGATGGTC 9958 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||||| || | || || ||||| || ||||| Sbjct 9959 TTGCCAGTGAGTGTCTTCACGAAGATCTGCAT 9990 >seq62579 Length=228 Score = 87.8 bits (96), Expect = 2e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 |||||||||| | ||||| || || | ||| || || || || |||||||| || | | Sbjct 77 CCGCCGCGCAGGCGCAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCCGAG 136 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | ||||| | || || |||||||||||||| | || || ||||||||||| || || Sbjct 137 AGCGTGCGGCCCTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGCGGG 196 Query 64337 ATTCCTTCTTTTTCTTGTATTTT 64359 || || || || || || || || Sbjct 197 ATGCCCTCCTTGTCCTGGATCTT 219 >seq30454 Length=461 Score = 86.0 bits (94), Expect = 6e-12 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||| | |||| || || || |||||||| ||||| || | || |||||| | || Sbjct 29 AGCACCAAGTGAAGGGTGGACTCCTTTTGAATATTGTAGTCGGAGAGGGTGCGTCCATCC 88 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || ||||||||||| ||| | || | || || ||||| || ||||||||||| || || Sbjct 89 TCGAGCTGCTTGCCAGCAAAGATCAAACGTTGTTGGTCAGGGGGAATTCCTTCCTTGTCC 148 Query 64352 TGTATTTTTTGCTTTAC 64368 || || || |||||| Sbjct 149 TGAATCTTGGTCTTTAC 165 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499209565660280