Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physarum_20polycephalum_20[genbank_20GCA_5F000413255.3_202014-06-30] 69,687 sequences; 205,175,886 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq146 113 4e-20 seq59190 105 7e-18 seq2782 93.3 4e-14 seq6776 91.5 1e-13 seq1429 87.8 2e-12 seq30454 82.4 8e-11 >seq146 Length=178297 Score = 113 bits (124), Expect = 4e-20 Identities = 143/194 (74%), Gaps = 2/194 (1%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| ||||| ||||||||||| | || || |||||||||||| || || | Sbjct 157715 GACTCCTTCTGAATATTGTAGTCGCTGAGGGTGCGTCCGTCCTCGAGTTGCTTTCCAGCG 157774 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| || ||||||||||| || || || || || ||||| ||| | ||||| || | Sbjct 157775 AAGATGAGGCGCTGTTGGTCAGGGGGAATTCCCTCCTTGTC-TTGAATCTTTGTCTTGAC 157833 Query 138541 TGT-TCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 | || | |||||| | ||| ||||| | ||| | || || ||||| || ||||| Sbjct 157834 GCTCTCGATGGTGTCAGAGCTCTCGACCTCCAACGTGATGGTCTTTCCAGTGAGTGTTTT 157893 Query 138600 TACAAAAATCTGCA 138613 ||||||||||||| Sbjct 157894 CACAAAAATCTGCA 157907 Score = 82.4 bits (90), Expect = 8e-11 Identities = 135/192 (70%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||||||||||||||||||| | || || ||||||||||| || |||| Sbjct 157395 GACTCCTTTTGAATGTTGTAGTCGGAGAGGGTGCGTCCATCCTCGAGTTGCTTTCCGGCG 157454 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGT-TTTAA 138539 |||| || || |||||||| || || || || || ||||| ||| | || || |||| Sbjct 157455 AAGATGAGGCGTTGTTGGTCAGGGGGAATTCCCTCCTTGTC-TTGAATCTTAGTCTTTAC 157513 Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 || | |||||| | ||| || |||| || | || || ||||| || || || Sbjct 157514 GCTCTCAATGGTGTCAGAGCTCTCGACTTCGAGAGTAATAGTCTTGCCAGTGAGGGTCTT 157573 Query 138600 TACAAAAATCTG 138611 || || ||||| Sbjct 157574 AACGAAGATCTG 157585 >seq59190 Length=243 Score = 105 bits (116), Expect = 7e-18 Identities = 143/197 (73%), Gaps = 2/197 (1%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 ||||||||||| ||||||||||| | |||||| |||||||| || || || | Sbjct 225 GACTCCTTTTGGATGTTGTAGTCAGAAAGAGTACGTCCATCCTCGAGCTGCTTTCCAGCG 166 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| |||||||||||||| ||||| || || |||||||| || | || || || | Sbjct 165 AAGATGAGACGCTGTTGGTCGGGAGGGATTCCCTCTTTGTC-TTGGATCTTGGTCTTGAC 107 Query 138541 TGT-TCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 | || | ||||| | ||||| ||||| | || | || ||||| || || || || Sbjct 106 ACTCTCGATAGTGTCAGAGGACTCGACCTCAAGGGTAATTGTCTTACCCGTGAGGGTCTT 47 Query 138600 TACAAAAATCTGCATGG 138616 || ||||||||||||| Sbjct 46 GACGAAAATCTGCATGG 30 >seq2782 Length=10868 Score = 93.3 bits (102), Expect = 4e-14 Identities = 160/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| || || | ||| | || || || | | | |||||||| || |||||||| || Sbjct 9763 GCCACCACGTAGACGGAGCACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAATCAGA 9822 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 | ||||| ||||| ||||| || |||| | |||| ||||| |||||||| || || Sbjct 9823 GAGGGTACGTCCATCCTCTAGTTGCTTGCCGGCAAAGATAAGACGTTGTTGGTCAGGGGG 9882 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGT-TCCACGGTGTCGGTCGACTCCA 138565 || ||||| ||||| ||| || || || | | || | |||||| | ||||| Sbjct 9883 AATTCCTTCCTTGTCCTGGATCTTG-GTCTTCACGGACTCGATGGTGTCTGAGCTCTCCA 9941 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 |||||| || | || || ||||| || || || || || ||||||||| Sbjct 9942 CCTCGAGGGTGATGGTCTTGCCAGTGAGTGTCTTCACGAAGATCTGCATG 9991 Score = 86.0 bits (94), Expect = 6e-12 Identities = 137/194 (71%), Gaps = 2/194 (1%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || |||||||||||| | || || |||||||| || || |||| | Sbjct 8856 GACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGTCCATCCTCGAGCTGCTTGCCGGCA 8915 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| | ||| |||||||| || || || ||||| ||||| || | || || || | Sbjct 8916 AAGATCAAACGTTGTTGGTCAGGGGGGATTCCTTCCTTGTC-CTGGATCTTCGTCTTCAC 8974 Query 138541 TG-TTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 | || | |||||| | ||| ||||| | || | ||||||||||| || || || Sbjct 8975 GGACTCAATGGTGTCAGAGCTCTCGACCTCCAAGGTAATGGTTTTACCAGTGAGGGTCTT 9034 Query 138600 TACAAAAATCTGCA 138613 || ||||||| || Sbjct 9035 GACGAAAATCTACA 9048 >seq6776 Length=2740 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 |||||| |||| |||| || | || | | |||||||| || ||||||||||| Sbjct 1440 GCCGCCGCGCAGGCGCAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCCGA 1381 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 | || || ||||| || || || |||| |||| || ||||| |||||||| || Sbjct 1380 GAGCGTGCGGCCCTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGCGG 1321 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || || || ||||| ||| || || | | || | |||||| ||| |||||| Sbjct 1320 GATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCGATCGTGTCGCTCGGCTCCAC 1261 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATGG 138616 ||| | || | ||| || || ||||| || || || || |||||||||| Sbjct 1260 CTCCAGCGCGATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCATGG 1211 >seq1429 Length=23345 Score = 87.8 bits (96), Expect = 2e-12 Identities = 267/411 (65%), Gaps = 9/411 (2%) Strand=Plus/Minus Query 52431 tttttttCCGGCAGCTTTGCCGCCATCTTTTACATTAAAACGAAAGGCATAATGCCCGGC 52490 || ||||||||||| || || ||||| | | || | || ||| |||||| || Sbjct 8197 TTCTTTTCCGGCAGTTTCTGTGCTATCTTCTGGTTGAAGAAGAGAGGATTAATGCTTGGA 8138 Query 52491 CTGACGTTCAGCAACGAGTTGATATCGCGCGACGAAGGACTGCACACGGACTTTGCGTGC 52550 || || || ||||| || || ||||| ||||| || ||| ||||| || ||| Sbjct 8137 TTGGCGCAATCTAATGAGTTCATTTCCCGCGATGAAGGTCTCCACTGCGACTTCGCTTGC 8078 Query 52551 CTCTACTACAAGACGCGCGTGACCGAAAAATTGGATTCGGACACGATCCTGAGC---ATG 52607 ||| ||| | || | || | ||| || | | || || ||| | || Sbjct 8077 CTCCTTTACTCTATGCTCT---CCAACAAACTGAAACCAGAGAC---CCTAAAATCGATT 8024 Query 52608 TTCAAGGAGGCGGTGGCTATCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTG 52667 || | || ||||| || | || || |||||| | || | || || ||||||| ||| Sbjct 8023 ATCTATGATGCGGTAGCCGTAGAGAAAGAGTTTATCACAGAGGCCCTACCGGTCGCCCTG 7964 Query 52668 CTGGGCATGAACGCGCAGTCCATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTG 52727 | || |||||||| | ||||| || | |||||||| || || || ||||| || || Sbjct 7963 ATTGGAATGAACGCCGAAGCCATGAGCCAATACATCGAATTCGTCGCTGATCGACTTTTA 7904 Query 52728 GTGCAGCTCGGGCAGCCAAAGTACTTCAACGCTCGCAATCCGTTTGAGTTTATGAACAAC 52787 || ||| ||||| || ||| || |||||| || || || || | ||| | | Sbjct 7903 CTGGCGCTTGGGCACCCCAAGGTCTACAACGCCAAAAACCCATTCGACTGGATGGAACTC 7844 Query 52788 ATTTCGCTTGAGGGCAAGACCAACTTTTTCGAGAAGCGAGTCGGCGAGTAT 52838 || ||| | | ||||| ||||||||||||| || || ||||||| Sbjct 7843 ATCTCGTTGTCCAGAAAGACGAACTTTTTCGAGAGCCGTGTGTCCGAGTAT 7793 >seq30454 Length=461 Score = 82.4 bits (90), Expect = 8e-11 Identities = 136/194 (70%), Gaps = 2/194 (1%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||||||||| ||||||||| | || || |||||||| || || || | | Sbjct 47 GACTCCTTTTGAATATTGTAGTCGGAGAGGGTGCGTCCATCCTCGAGCTGCTTGCCAGCA 106 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGT-TTTAA 138539 |||| | ||| |||||||| || || || ||||| ||||| ||| | || || |||| Sbjct 107 AAGATCAAACGTTGTTGGTCAGGGGGAATTCCTTCCTTGTC-CTGAATCTTGGTCTTTAC 165 Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 | || | ||||| | ||| ||||| | || | || |||||||| || || || Sbjct 166 TGACTCGATAGTGTCAGAGCTCTCAACCTCAAGGGTAATAGTCTTACCAGTGAGGGTCTT 225 Query 138600 TACAAAAATCTGCA 138613 || || |||| || Sbjct 226 GACGAAGATCTACA 239 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495830112026640