Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physarum_20polycephalum_20[genbank_20GCA_5F000413255.3_202014-06-30] 69,687 sequences; 205,175,886 total letters Query= NC_011357.1 Length=62147 Score E Sequences producing significant alignments: (Bits) Value seq2996 331 4e-86 seq2099 163 1e-35 seq7906 122 3e-23 >seq2996 Length=8617 Score = 331 bits (366), Expect = 4e-86 Identities = 690/1012 (68%), Gaps = 22/1012 (2%) Strand=Plus/Minus Query 35451 TCCCGCCCGGAAGGGTTTGTGGTGTATACGACCACCCAGTCGAATGAGCCGCCAGCCGGG 35510 || ||||||||||| || || | || ||| || |||||||| || ||||| || || Sbjct 6777 TCGCGCCCGGAAGGCTTCGTCATATACCTGACGACGCAGTCGAACGACCCGCCTGCAGGT 6718 Query 35511 GTGTTCAGACAGAAACTGCAGTACGCCCGGGATGTCCGTGACGGCAAAATTCATGATCCG 35570 ||||| || || || | ||||| || || || || |||||||| ||| || ||| Sbjct 6717 GTGTTTCTGCAAAAGCTTCGATACGCGCGCGACGTGCGCGACGGCAAGATTGTCGACCCG 6658 Query 35571 CACTTTCTGCCGGTGATTTTTGAGCATCCTCCTGAAATGGTGGAAAGCGGGGCTCACCTG 35630 ||| |||||||||| || |||||||| || |||||| | | ||| || |||||| Sbjct 6657 TGCTTCGTGCCGGTGATCTTCGAGCATCCGCCCGAAATGATCGCCAGCAAGGAGCACCTG 6598 Query 35631 CTGATGGAAAACCTCGCCATGGTTAACCCGAATCTCGGTTATTCGGTGGATGAGGCTTTT 35690 | | ||||||||||| ||||| |||||||| |||| | ||| || ||| |||| | | Sbjct 6597 AAGGTCGAAAACCTCGCGATGGTCAACCCGAACTTCGGATTTTCCGTCGATCAGGCGTAT 6538 Query 35691 CTGTACCGGGAGTACCGTAAAGCCCGGGAGGCTGGTGAGGAAGCATTTCGTGGCTTCATG 35750 || | || |||| || || || ||| | || || || | || || |||||| | Sbjct 6537 CTCGAGCGCGAGTTTCGCAAGGCGAAGGAAACGGGCGAAGAGTCGTTCCGCGGCTTCCTT 6478 Query 35751 TCAAAACATGCCAATGTGGAAATTGGTCTTGCCCTGCGTTCTGACCGCTGGGCGGGTGCG 35810 | || ||||| || || || || || || || ||||| || || |||||||| |||||| Sbjct 6477 GCGAAGCATGCGAACGTCGAGATCGGCCTGGCACTGCGCTCGGATCGCTGGGCCGGTGCG 6418 Query 35811 GATTTCTGGGA----GCAGCAGGGCAGG-CGCGTCAGCCTGGACGATATCCTGCAGCGCG 35865 || |||||||| || || | || || |||| || || ||||| | || ||||| Sbjct 6417 GACTTCTGGGAAGGCGCCGC-GCGCGGGACGCG-CACGCTAGACGAACTGCT--TGCGCG 6362 Query 35866 CT--GATGTGGT-GACGGTGGGGATTGACGGCGGGGGCCTGGATGATCTGCTGGGAATGT 35922 || || ||||| ||| || |||||||||||||| ||||| ||||| ||||| || | Sbjct 6361 CTGCGAGGTGGTCGAC-GTTGGGATTGACGGCGGCGGCCTCGATGACCTGCTCGGGTTTG 6303 Query 35923 ACGTGATTGGCCGTGACAGGGAAACCCGCGAATGGCTGGGACTGGGGCCATGCCTGGGCG 35982 ||| | || || || | | ||| || | ||||| | ||| |||||||||||| Sbjct 6302 CTGTGGTGGGTCGAGAGCGCGGCACCGGCAACTGGCT-AGCGTGGTCGCATGCCTGGGCG 6244 Query 35983 CATGAAACCGCGGTGGTCCGACGGAAGAGCGAGGCGTCCCGGTTTCAGGATCTTGTTGCC 36042 ||| ||| | | | || || ||| ||| ||| | || ||| | ||| || || | Sbjct 6243 CATCCGTCCGTGCTCGAGCGGCGAAAGTCCGAAGCGGCACGTTTTAACGATTTTTCTGAC 6184 Query 36043 TGTGGAGATATGACCATTGTCCGGCGTGTCGGGGATGACACGGCGGAAGTGGCGGAATAT 36102 || || |||| | ||| || |||| || ||| || || || |||| || | Sbjct 6183 GACGGCGACCTGACGCTGGTCGAGCACATCGGCGAGGACGTCGCCGATGTCGCGG-ATCT 6125 Query 36103 GTGCGTC-GC--ATTCATGAGGCTGAGT-TACTGGACCATATCGGTATTGACCCGTCAGG 36158 |||| || | | | | | || | || ||| | ||||| | |||||| | || Sbjct 6124 ---CGTCAGCCAGTGCGAGTCGTCGGGTCTGCTCGACAAGGTCGGTGTCGACCCGGCCGG 6068 Query 36159 GGTGGGGCAGATTCTGGATTCACTGGCGGAAGCCGGGATCCCCGACGGAATTGTGGTGGG 36218 | || | | || || | |||| || || || | || || | | ||| | || Sbjct 6067 CATCGGCGCGGTGCTCGACGCGCTGGTCGATGCTGGTGTTCCAGAGGACAAGGTGATCGG 6008 Query 36219 GATAAGCCAGGGCTGGAAACTGGGCGGGGCCATTAAAACCACCGAGCGCAAACTGGCTGA 36278 || ||||||||||| || || || || || || || |||||||||| | || || Sbjct 6007 CATTTCGCAGGGCTGGAAGCTCGGGGGTGCAATCAAGACGACCGAGCGCAGGATCGCCGA 5948 Query 36279 AGGGGTGCTGGTGCATGGTGACCAGCCCCTGATGGCCTGGTGTGTCGGCAATGCCCGGGT 36338 || | |||| |||| || | ||| | | ||||||||||||| ||||||||||| || || Sbjct 5947 GGGCGCGCTGCTGCACGGCGGCCAACGCATGATGGCCTGGTGCGTCGGCAATGCGCGCGT 5888 Query 36339 GGAGCCTAAAGGTAACGCCATTCTTATCACCAAACAGGCCAGTGGACGGGGAAAAATTGA 36398 ||||| || || || || || || || |||||||| || ||| || || || || Sbjct 5887 CGAGCCGCGCGGCAATGCAATCCTGATTACGAAACAGGCAAGCGGATCGGCCAAGATCGA 5828 Query 36399 CCCGCTGATGGCGCTGTTCAATGCGGTCTCCCTGATGTCCCTTAACCCGGAA 36450 |||||||||||| || || || || || || |||| ||| |||||| || Sbjct 5827 CCCGCTGATGGCACTTTTTAACGCCGTGTCGTTGATCAGCCTCAACCCGCAA 5776 Score = 268 bits (296), Expect = 4e-67 Identities = 426/611 (70%), Gaps = 0/611 (0%) Strand=Plus/Minus Query 33528 ACGGCCTGCCCGGACTGGGCAGAGCGCCTGAAAAAGGGGCTGTCGATTATTCCGGCTCCG 33587 || || || || || ||||| || || || || | ||||| |||||| ||||| | || Sbjct 7386 ACTGCTTGTCCCGATTGGGCCGAACGGCTCAAGACGGGGCGGTCGATCATTCCACCGCCA 7327 Query 33588 ATTTATCCGGAGCAGGCCGCACATGCCCTGGCGATTTTTAAACAACTGCGGATTGTGGAT 33647 || | || |||||||| | || || || || | || || || || ||||||||| Sbjct 7326 ATCTTCCCCGAGCAGGCAGAGCAGGCGCTTGCTGTGTTCAAGGAATTGAAGATTGTGGAC 7267 Query 33648 GCACCGGGCAGCCCGACGTTCGGGGAGTCCTGCGCACAGTGGGTGTTTGACCTGGTGGCG 33707 || ||||| |||||||||||||| ||||| | || || ||||| || || ||||| ||| Sbjct 7266 GCGCCGGGTAGCCCGACGTTCGGCGAGTCATCGGCGCAATGGGTCTTCGATCTGGTCGCG 7207 Query 33708 GCCCTGTTTGGCTCCTACGATGCGCAGACCGGTGTACGCCATATCAAGGAAGTTTTTATC 33767 | | || ||| | ||||| || ||| ||| |||| |||| || || || Sbjct 7206 TCGATCTTCGGCGCATACGACGCTGAGAACGGGCGTCGCCTGATCACAGAGTGGTTCGTC 7147 Query 33768 CTTATCCCCAAGAAAAACAGCAAGTCCACGCTGGCTGCCGGGATCATGATGACGGCGCTG 33827 ||||||||||| |||||||| || |||||||| || || |||||||||||||| || Sbjct 7146 TGCATCCCCAAGAAGAACAGCAAATCGACGCTGGCCGCAGGAATCATGATGACGGCCATG 7087 Query 33828 TTACTGAACTGGCGGCAGGCGGCGGGCTACACCATTCTGGCCCCGACCGTGGAGGTGGCG 33887 | ||||| ||||| | |||||| ||| | ||||| || || || | ||||| || Sbjct 7086 ATCCTGAATTGGCGCATGTCGGCGGAATACGCGATTCTCGCGCCAACGATCGAGGTCGCC 7027 Query 33888 GCTAACGCCTTCAACCCTGCCAGGGATATGGTACGACGGGACGATGATCTGGATGACCTC 33947 |||| |||| || | || ||||| | || || || || || |||||| Sbjct 7026 AATAACAGCTTCGCGCCGAGTCGCGACATGGTGAAGCACGAGGACGAGCTCGACGACCTC 6967 Query 33948 TGTCAGGTGCAGACACATATCCGGACCATCACCCACAGGGTGACGGACACCACCCTGAAG 34007 | ||||||||| |||| ||| ||| ||||| ||| | || | | | | |||||| Sbjct 6966 TTCCAGGTGCAGGCACACATCAAGACGATCACGCACCGCACGAGCGGCGCGATGCTGAAG 6907 Query 34008 GTGGTGGCTGCCGATCCGAATACGGTATCCGGTATCAAGTCCGTGGGGACGCTGATTGAT 34067 || || || || ||| |||| ||||| ||||||| ||| ||| || |||||||| || Sbjct 6906 GTCGTCGCGGCTGATTCGAACACGGTTTCCGGTAAGAAGAGCGTCGGCACGCTGATCGAC 6847 Query 34068 GAACTGTGGTTATTTGGCAAGCAGTACAAAGCGGAGGACATGTTACGTGAAGCCATAGGC 34127 || |||||| | || ||||| ||| | || ||||||||| | || || || | || Sbjct 6846 GAGCTGTGGCTTTTCGGCAAACAGCCGGATGCTGAGGACATGCTGCGCGAGGCGACCGGT 6787 Query 34128 GGCCTTGCCTC 34138 || || || || Sbjct 6786 GGTCTGGCTTC 6776 >seq2099 Length=12992 Score = 163 bits (180), Expect = 1e-35 Identities = 557/852 (65%), Gaps = 22/852 (3%) Strand=Plus/Minus Query 34529 AACGCCTGCTCCAGCGCATCCAGCACGAATGTCGTTTC-CATAGACGATGAGACCCGCCA 34587 |||||||| | |||||| ||||||||||| ||| ||| ||| || | ||| || ||||| Sbjct 6408 AACGCCTGGTTCAGCGCGTCCAGCACGAA-GTCAGTTCGCATCGAGGCTGACACGCGCCA 6350 Query 34588 CCCCACGATGTATCCGGCAAACACATCAATGATAAACGCCACATAGACGAAGCCCTGCCA 34647 || ||||| | ||||||||||| | | || ||||| || || ||||| ||| Sbjct 6349 ACCGACGATACGCCGCGCAAACACATCGGTCACGAAGGCCACGTACACAAAGCCGGACCA 6290 Query 34648 TGTGCTGACGTAAGTAAAATCAGCCACCCACAGCTGGTCAGGTCGTTCTGCCACGAACTG 34707 ||| | | || |||||||| || ||||||||| || || || || ||| |||||| Sbjct 6289 TGTCCAGCAATAGGTAAAATCCGCGACCCACAGCGCGTTGGGCCGATCGGCCTGGAACTG 6230 Query 34708 CGGCTTTACGCGGT----CGCCTGCGGCAACGGCT-TTCCGGCTGATGGTCGTACGGACC 34762 | || || |||| || |||||| || | || |||| || || | || | Sbjct 6229 ACGTTTGACCCGGTCCAGCGGGCGCGGCACCGCATCGTCGCGCTG--CGTTGTCCTGATC 6172 Query 34763 TTTTTACCCCGGAGAACACCGGCAAGTCCCATAACCGCCATGAGACGTGCCACTGTACAT 34822 || || | ||||| | || ||||| || ||| || || || || || || Sbjct 6171 CGGCGCCCACGCCGCACACCTTCGAGGCCCATCGCCTTCATCAGGCGCGCAACCGTGCAG 6112 Query 34823 CTGGCCACCCTGATTCCTTCCCGTAACAACTGACGCCAGACTTTACGCACACCGTACACC 34882 | || ||| | | || || || | |||||| |||||||| || |||||||| ||||| Sbjct 6111 CGCGCGACCTTCACGCCATCGCGCAGCAACTGGCGCCAGACCTTGCGCACACCATACACG 6052 Query 34883 TGATGATTTTCATCGTATACGCGCTGTATCTCTCTCTTCAGCCAGTCGTCGTGCTGCGCA 34942 | || | || | || | | || | |||||| | ||| | ||| Sbjct 6051 CCAAAGTTCTTGTCCCAGACCACCCGGATGAGGCCCTTCAGTTGAGCATCGCGACACGCT 5992 Query 34943 CGGGCACTGCGTTTATCCGGAT-GATGTCGCTGT--TGC-TGACAATGGTAATACGTTGA 34998 || || | || ||||||| | || ||| || || || | |||||||||| || Sbjct 5991 CGCGCTGGCCATTGCTCCGGATCGCTG-CGCCGTCCGGCGTGCC---GGTAATACGTCGA 5936 Query 34999 CGGGGCAATATGCAGTTCGCTGCATACCGGTCCGACCCCGTACTGCTCACGCAGCTTATC 35058 ||| || || |||| || ||| | ||| |||| ||||| || || ||| || Sbjct 5935 CGGCGCGATCGGCAGCAGGCGGCAGATCGGCTCGACACCGTAGACGTCGCGATGCTCGTC 5876 Query 35059 CAGCAGTGGCATCATTTTTTCCAGAGGCGGTCGAACTCCGCCTTCGCAAAATAAGCGGAA 35118 | | | ||||| ||| | ||||||||| |||||||| || ||||| ||||| Sbjct 5875 GATGAACGCAATCATGGCTTCGATCGGCGGTCGAGCTCCGCCTGTGCGAAATACGCGGAG 5816 Query 35119 GCCTGGCGAAGGATATCGTTACTGCGGCGCAGTTCACGATTTTCACGTTCCAGCTCTTTC 35178 |||| |||||| || ||||| ||||| ||| ||||| || || ||||| || ||| Sbjct 5815 GCCTTGCGAAGAATCTCGTTGGCCGTGCGCAATTCGCGATTCTCGCGCTCCAGTTCCTTC 5756 Query 35179 AGACGCTGACGTTCAGCGCTGGTGAGCCCACCATCACCGCCCCCGGTATCCCGCTCATGC 35238 || ||| | || | | || |||| | ||| | | || || ||| |||||| | Sbjct 5755 AGGCGCGCCAGCTCGGGAGTCGT-CGCCCCCGATCGCTGGCCACG--ATCACGCTCAGCC 5699 Query 35239 TGGCGAACCCAGACACGCAGAGTCTCCGGCGTACA-GCCAATCTTTGGGGCAATGGAACA 35297 ||| | |||| || || ||||| ||| ||| || ||||| | ||| || || | Sbjct 5698 TGGATGATCCAGTTGCGAAGCGTCTCACGCG-ACATCCCCATCTTCGAGGCGATCGAGCG 5640 Query 35298 AATTGCCGCCCACTGTGAGTCATATTCATCCTGACTTTCCAGAACCATACGAATCGCCCG 35357 || ||| ||| ||| | || ||||| | || || | ||||| || | |||||| Sbjct 5639 GATCGCCACCCCCTGCGTCTCGTATTCGTGTTGGTGCTCGAAGACCATTCGGACCGCCCG 5580 Query 35358 CTGACGGACTTC 35369 || ||| || || Sbjct 5579 CTCACGAACCTC 5568 >seq7906 Length=2084 Score = 122 bits (134), Expect = 3e-23 Identities = 166/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 16471 CTCCATGCCGATGATACCCCGGTCCAGGTACTGCTGCCGGGTAATAAGAAGACGAAGACC 16530 ||||| || || || || ||| ||| ||| || | ||| || || | |||||| | || | Sbjct 348 CTCCACGCGGACGACACGCCGATCCCGGTGCTCCCGCCCGGCAACAGGAAGACCAGGAGC 289 Query 16531 GGGCGGTTGTGGGCGTATGTTCGTGATGACCGCAATGCAGGGTCAGCGTTGGCAC-CTGC 16589 || |||||||||| || || || ||||||||| |||| || ||| | | |||| Sbjct 288 GGTCGGTTGTGGGTCTACGTGCGCGATGACCGCCGCTCAGGTTC-GCGCGAACCCGCTGC 230 Query 16590 AGTGTGGTTCGCTTACAGCCCGGACAGAAAAGGCATCCATCCGCAGACTCATCTTGCCTG 16649 || |||||||| ||| ||||| | ||||||||||| || ||||| ||||| ||| | Sbjct 229 TGTCTGGTTCGCGTACTCGTCGGACCGCAAAGGCATCCACCCTCAGACCCATCTCGCCGG 170 Query 16650 CTTCAGCGGTGTGCTGCAAGCGGATGCGTACGCCGGGTTCAACGAGCTG 16698 ||| || || || || ||||| | || ||||| ||||||||| || Sbjct 169 ATTCGAAGGCGTCCTCCAGGCGGACGGCTATGCCGGCTTCAACGAGTTG 121 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 198584328784446