Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physarum_20polycephalum_20[genbank_20GCA_5F000413255.3_202014-06-30] 69,687 sequences; 205,175,886 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq146 93.3 3e-14 seq30454 91.5 1e-13 seq2782 86.0 4e-12 >seq146 Length=178297 Score = 93.3 bits (102), Expect = 3e-14 Identities = 144/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCT 15027 || || || ||||| || || || || |||||||| ||| ||| | | | || ||| Sbjct 156643 ACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGTCCATCCTCT 156702 Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087 | ||| ||||||||| | |||||||| |||||||| || |||||||||||||| Sbjct 156703 AGTTGCTTGCCAGCGAAGATCAAACGTTGTTGGTCAGGGGGGATTCCTTCCTTGTCCTGG 156762 Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTA 15147 || ||| | || ||| || || |||||| | ||||| || | || ||||| || Sbjct 156763 ATCTTGGTCTTGACAGACTCGATGGTATCGGAGCTCTCTACCTCAAGAGTGATGGTCTTT 156822 Query 15148 CCTGTCAGAGTTTTTACAAAAATTTG 15173 || || || || || || || || || Sbjct 156823 CCAGTGAGGGTCTTGACGAAGATCTG 156848 Score = 91.5 bits (100), Expect = 1e-13 Identities = 145/208 (70%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCT 15027 || || || ||||| || || || || || ||||| |||||||| | | |||| || Sbjct 157700 ACCAAGTGGAGGGTGGACTCCTTCTGAATATTGTAGTCGCTGAGGGTGCGTCCGTCCTCG 157759 Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087 | ||| || |||||| | || | ||||||||||| |||||||| |||||||| | Sbjct 157760 AGTTGCTTTCCAGCGAAGATGAGGCGCTGTTGGTCAGGGGGAATTCCCTCCTTGTCTTGA 157819 Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTA 15147 || || | || || | || || || || | || || || || || ||||| || Sbjct 157820 ATCTTTGTCTTGACGCTCTCGATGGTGTCAGAGCTCTCGACCTCCAACGTGATGGTCTTT 157879 Query 15148 CCTGTCAGAGTTTTTACAAAAATTTGCA 15175 || || || ||||| |||||||| |||| Sbjct 157880 CCAGTGAGTGTTTTCACAAAAATCTGCA 157907 >seq30454 Length=461 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCT 15027 || || |||||||| || || ||||| || ||||| ||| ||| | | | || || Sbjct 32 ACCAAGTGAAGGGTGGACTCCTTTTGAATATTGTAGTCGGAGAGGGTGCGTCCATCCTCG 91 Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087 | || |||||||| | |||||||| |||||||| ||||||||||||||||| | Sbjct 92 AGCTGCTTGCCAGCAAAGATCAAACGTTGTTGGTCAGGGGGAATTCCTTCCTTGTCCTGA 151 Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTA 15147 || ||| | ||||| || ||||| || | || || || | |||||| || ||| Sbjct 152 ATCTTGGTCTTTACTGACTCGATAGTGTCAGAGCTCTCAACCTCAAGGGTAATAGTCTTA 211 Query 15148 CCTGTCAGAGTTTTTACAAAAAT 15170 || || || || || || || || Sbjct 212 CCAGTGAGGGTCTTGACGAAGAT 234 >seq2782 Length=10868 Score = 86.0 bits (94), Expect = 4e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCT 15027 || || |||||||| || ||||| || ||||||||||| || | | |||| ||| Sbjct 9162 ACCAAGTGAAGGGTGGACTCTTTCTGAATGTTGTAATCAGAAAGGGTACGTCCGTCCTCT 9221 Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087 | ||| || ||||| | || | || |||||||| || |||||||||||||| Sbjct 9222 AGTTGCTTTCCAGCAAAGATGAGGCGTTGTTGGTCAGGGGGGATTCCTTCCTTGTCCTGG 9281 Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTA 15147 || || | ||||| || || ||||| | || || || |||||||| || ||| Sbjct 9282 ATCTTAGTCTTTACGGACTCGATGGTATCAGAGCTCTCGACCTCCAAGGTAATTGTCTTA 9341 Query 15148 CCTGTCAGAGTTTTTACAAAAATTTGCATATT 15179 || || || || || || ||||| | ||||| Sbjct 9342 CCAGTGAGGGTCTTGACGAAAATCTAAATATT 9373 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357088463288795