Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physarum_20polycephalum_20[genbank_20GCA_5F000413255.3_202014-06-30] 69,687 sequences; 205,175,886 total letters Query= NC_011589.1 Length=40287 Score E Sequences producing significant alignments: (Bits) Value seq3181 105 2e-18 >seq3181 Length=8042 Score = 105 bits (116), Expect = 2e-18 Identities = 321/485 (66%), Gaps = 21/485 (4%) Strand=Plus/Plus Query 28573 TCGAGGTAATCCGCCCAGACCTGCATCATCCGCACGCGCTCCTGCAGGTGCGATGTGCGG 28632 || || ||||| ||||| |||||||||| | ||||||| | | | |||||| Sbjct 5922 TCCAGATAATCGGCCCACTTCTGCATCATCGCCCTCCGCTCCTTGATGAACTTCGTGCGG 5981 Query 28633 TTGTAGGCCCGGCCGTTGGGATCCTTCACCGCGTGAGCAAGCTGGTGCTCGATGATGTCC 28692 || || ||| |||| | || ||| || ||||| ||||| |||||||| | || Sbjct 5982 TTATATGCCTTGCCGAGCGTGTCGGGCACGGCATGAGCGAGCTGATGCTCGATCACTTC- 6040 Query 28693 GGGCGGAAG-TGCAGGACCTCGTCCAGAATGGTGCGAGCCGTCGCGCGGAAGCCGTGGCC 28751 |||| | | || |||||| ||||| ||||| ||| |||| || ||||||||||| Sbjct 6041 GGGCTTTTGCTCCAATTCCTCGTGAAGAATCGTGCGTGCCATCGCCCGAAAGCCGTGGCC 6100 Query 28752 GGTCATCATCGTGCG---GTCGTAACCCATGTTGCGCAGCGCTGCGGTAACGGCGTTCTC 28808 ||| || || || |||||| |||| | ||||| || || | || ||| || Sbjct 6101 GGTGATTTCGGTCCGCGTGTCGTAGCCCAAGCGACGCAGAGCCGCATTGACTGCGGCATC 6160 Query 28809 TGACATCGGGCGTTTGGAATCGCGGGCGCCAGAGAACACCCACTTGTG-CCG--GCCGGT 28865 ||||||||| | | ||| || || | || || | | | ||| |||||| Sbjct 6161 GCTCATCGGGCGCTGAGCCGAGCGCGCTCCCGGAAAGAC---GTAGCGACCGTTGCCGGT 6217 Query 28866 GATCGGCTTGATGTCCTC-CAGGATCTGCAGCGCCTGCCTGGACAGCGGCACCAGGTGCG 28924 | | || ||| | ||| ||| ||||||| || ||| | | ||||| || |||||| Sbjct 6218 CAGC-GCCTGAAGCTCTCGCAGAATCTGCACGGCTTGCGTTGCGAGCGGAACTAGGTGCT 6276 Query 28925 CAGCACGCATCTTCATCTTGCTGGC-AGGGATGGTCCACACGGCCGCGTCGAGGTCGAAC 28983 | | ||||| ||||| || | ||| || | |||| || || || || |||||| Sbjct 6277 CGG------TCTTCGTCTTGGTGACAAGGTATCG-CCACTCGCCCTTATCAAGATCGAAC 6329 Query 28984 TCCTCCCATTCCGCATGCCGCAGTTCGCCAGGACGCAGGAACACCAGCGGCGCCAGCCGC 29043 | |||| || || | ||||||||||| || || |||| || ||||| ||| Sbjct 6330 TGAGCCCACTCGGCCTTGCGCAGTTCGCCGGGTCGAGTAAACAACATGGGCGCAAGCTTG 6389 Query 29044 AGCGC 29048 ||||| Sbjct 6390 AGCGC 6394 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 128690216381606