Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physarum_20polycephalum_20[genbank_20GCA_5F000413255.3_202014-06-30] 69,687 sequences; 205,175,886 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq146 116 4e-21 seq22 113 4e-20 seq6776 107 2e-18 seq30454 95.1 1e-14 seq59190 89.7 5e-13 seq62579 82.4 7e-11 >seq146 Length=178297 Score = 116 bits (128), Expect = 4e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945 |||||| || | || | |||||| || | || ||||| || ||||||||||| |||| Sbjct 157681 TCCACCACGAAGGCGGAGCACCAAGTGGAGGGTGGACTCCTTCTGAATATTGTAGTCGCT 157740 Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005 | ||||| || || || || ||||||||| |||| | ||||| || || || || Sbjct 157741 GAGGGTGCGTCCGTCCTCGAGTTGCTTTCCAGCGAAGATGAGGCGCTGTTGGTCAGGGGG 157800 Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTG-CTTGAGTTGTTCGACGGTGTCCGTACTCTCGA 127064 || |||||||||| | ||| | | || ||||| |||| |||||| | ||||||| Sbjct 157801 AATTCCCTCCTTGT-CTTGAATCTTTGTCTTGACGCTCTCGATGGTGTCAGAGCTCTCGA 157859 Query 127065 CTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCA 127112 | || | || | || || || || || ||||| ||||||||||||| Sbjct 157860 CCTCCAACGTGATGGTCTTTCCAGTGAGTGTTTTCACAAAAATCTGCA 157907 Score = 89.7 bits (98), Expect = 5e-13 Identities = 154/224 (69%), Gaps = 0/224 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | || | |||||| || | || ||||| |||||||| ||||| ||| Sbjct 157362 CCACCACGAAGGCGGAGCACCAAGTGGAGGGTGGACTCCTTTTGAATGTTGTAGTCGGAG 157421 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||| ||| || || || ||||| ||| |||| | || || || || || || Sbjct 157422 AGGGTGCGTCCATCCTCGAGTTGCTTTCCGGCGAAGATGAGGCGTTGTTGGTCAGGGGGA 157481 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 || ||||||||||| || || ||| | || | |||||| | ||||||||| Sbjct 157482 ATTCCCTCCTTGTCTTGAATCTTAGTCTTTACGCTCTCAATGGTGTCAGAGCTCTCGACT 157541 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTG 127110 |||| || | || ||||| || || || || || || ||||| Sbjct 157542 TCGAGAGTAATAGTCTTGCCAGTGAGGGTCTTAACGAAGATCTG 157585 >seq22 Length=338851 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945 |||||| || | || | |||||| || | || ||||| || || || ||||| |||| Sbjct 331530 TCCACCACGGAGGCGGAGCACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCT 331589 Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005 || ||||| ||| || ||||| ||||| || ||||||| ||||| || ||||| || Sbjct 331590 CAAGGTGCGTCCATCCTCAAGCTGCTTTCCGGCAAAGATCAAACGCTGTTGGTCGGGGGG 331649 Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGAC 127065 |||||||||||||| ||| || ||| | |||| ||| || | |||||||| Sbjct 331650 GATGCCCTCCTTGTCTTGGATCTTGGTCTTCACGCTCTCGATGGTATCAGAGCTCTCGAC 331709 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCA 127112 || | || | || || ||||||| || || || ||||||| || Sbjct 331710 CTCTAAAGTGATGGTCTTTCCGGTCAAGGTCTTGACGAAAATCTACA 331756 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945 ||| ||||| | || | |||||| || | || ||||| |||||||||||||| ||| Sbjct 331302 TCCTCCGCGAAGGCGAAGCACCAAGTGCAAGGTGGACTCCTTTTGAATATTGTAGTCGGA 331361 Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005 | ||||| ||| || || || ||||| ||| |||| | || || || || || || Sbjct 331362 GAGGGTGCGTCCATCCTCGAGTTGCTTTCCGGCGAAGATAAGGCGTTGTTGGTCAGGGGG 331421 Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGAC 127065 || || |||||||| ||| || ||| | |||| ||| || | |||||||| Sbjct 331422 GATTCCTTCCTTGTCTTGGATCTTTGTCTTCACGCTCTCGATGGTATCAGAGCTCTCGAC 331481 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | ||| | || || ||||| || || || || || || ||||| Sbjct 331482 CTCCAAGGTGATGGTCTTTCCGGTGAGGGTCTTGACGAAGATTTGCAT 331529 >seq6776 Length=2740 Score = 107 bits (118), Expect = 2e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 || ||||| | |||| ||||| || | ||| ||||| || || || ||||| || Sbjct 1439 CCGCCGCGCAGGCGCAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCCGAG 1380 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | |||||| || || ||||| || || ||| |||||| |||||||| || || || Sbjct 1379 AGCGTGCGGCCCTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGCGGG 1320 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 ||||||||||||||| ||| || ||| | | |||| ||||| | ||| || Sbjct 1319 ATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCGATCGTGTCGCTCGGCTCCACC 1260 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGG 127115 || | | | ||| ||||||||||| || || || || |||||||||| Sbjct 1259 TCCAGCGCGATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCATGG 1211 >seq30454 Length=461 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945 |||||| || | || | |||||| || | || ||||| |||||||||||||| ||| Sbjct 13 TCCACCACGGAGGCGGAGCACCAAGTGAAGGGTGGACTCCTTTTGAATATTGTAGTCGGA 72 Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005 | ||||| ||| || ||||| || ||||| ||||||| || || || || || || Sbjct 73 GAGGGTGCGTCCATCCTCGAGCTGCTTGCCAGCAAAGATCAAACGTTGTTGGTCAGGGGG 132 Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGAC 127065 || || ||||||||| || || ||| | | |||| ||||| | ||||| || Sbjct 133 AATTCCTTCCTTGTCCTGAATCTTGGTCTTTACTGACTCGATAGTGTCAGAGCTCTCAAC 192 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCA 127112 || | ||| | || || || || || || || || || |||| || Sbjct 193 CTCAAGGGTAATAGTCTTACCAGTGAGGGTCTTGACGAAGATCTACA 239 >seq59190 Length=243 Score = 89.7 bits (98), Expect = 5e-13 Identities = 139/199 (70%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||| ||||| || ||||| || | || || ||| || ||||| |||||| Sbjct 228 GTGGACTCCTTTTGGATGTTGTAGTCAGAAAGAGTACGTCCATCCTCGAGCTGCTTTCCA 169 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| |||| | ||||| || |||||||| || ||||| ||||| ||| || |||| Sbjct 168 GCGAAGATGAGACGCTGTTGGTCGGGAGGGATTCCCTCTTTGTCTTGGATCTTGGTCTTG 109 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | |||| ||||| | |||||| || | ||| | || || || || || || Sbjct 108 ACACTCTCGATAGTGTCAGAGGACTCGACCTCAAGGGTAATTGTCTTACCCGTGAGGGTC 49 Query 127097 TTTACAAAAATCTGCATGG 127115 || || ||||||||||||| Sbjct 48 TTGACGAAAATCTGCATGG 30 >seq62579 Length=228 Score = 82.4 bits (90), Expect = 7e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 || ||||| | |||| ||||| || | ||| ||||| || || || ||||| || Sbjct 77 CCGCCGCGCAGGCGCAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCCGAG 136 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | |||||| || || ||||| || || ||| |||||| |||||||| || || || Sbjct 137 AGCGTGCGGCCCTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGCGGG 196 Query 127007 ATGCCCTCCTTGTCCGTGATTTT 127029 ||||||||||||||| ||| || Sbjct 197 ATGCCCTCCTTGTCCTGGATCTT 219 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475086597196880