Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physarum_20polycephalum_20[genbank_20GCA_5F000413255.3_202014-06-30] 69,687 sequences; 205,175,886 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq146 89.7 5e-13 seq22 89.7 5e-13 >seq146 Length=178297 Score = 89.7 bits (98), Expect = 5e-13 Identities = 142/201 (71%), Gaps = 2/201 (1%) Strand=Plus/Plus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197 || || || || |||||||| || || || ||| || ||| ||| || | ||| Sbjct 157386 TGGAGGGTGGACTCCTTTTGAATGTTGTAGTCGGAGAGGGTGCGTCCATCCTCGAGTTGC 157445 Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 ||||| ||| | || | ||||| ||||| || ||||| || || || |||||||| || Sbjct 157446 TTTCCGGCGAAGATGAGGCGTTGTTGGTCAGGGGGAATTCCCTCCTTGTCTTGAATCTTA 157505 Query 45258 TGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGT 45316 || | |||| || | |||||| || ||||||||||||||||| || ||||| || Sbjct 157506 GTCTTTA-CGCTCTCAATGGTGTCAGAGCTCTCGACTTCGAGAGTAATAGTCTTGCCAGT 157564 Query 45317 TAGAGTTTTTACAAAAATTTG 45337 || || || || || || || Sbjct 157565 GAGGGTCTTAACGAAGATCTG 157585 >seq22 Length=338851 Score = 89.7 bits (98), Expect = 5e-13 Identities = 160/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 ||||||||||| || | | ||| | |||| || || |||||||| ||||| || ||| Sbjct 331300 ATTCCTCCGCGAAGGCGAAGCACCAAGTGCAAGGTGGACTCCTTTTGAATATTGTAGTCG 331359 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 || ||| ||| || | ||| ||||| ||| | || | ||||| ||||| || Sbjct 331360 GAGAGGGTGCGTCCATCCTCGAGTTGCTTTCCGGCGAAGATAAGGCGTTGTTGGTCAGGG 331419 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 || || ||||| || ||||| | | ||||| | |||| || | ||| || || ||| Sbjct 331420 GGGATTCCTTCCTTGTCTTGGA-TCTTTGTCTTCACGCTCTCGATGGTATCAGAGCTCTC 331478 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||| || | || | || || ||||| || || || || || |||||||| Sbjct 331479 GACCTCCAAGGTGATGGTCTTTCCGGTGAGGGTCTTGACGAAGATTTGCAT 331529 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451609465662520