Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physarum_20polycephalum_20[genbank_20GCA_5F000413255.3_202014-06-30] 69,687 sequences; 205,175,886 total letters Query= NC_012743.2 Length=62715 Score E Sequences producing significant alignments: (Bits) Value seq4462 297 8e-76 seq8688 120 1e-22 seq5168 93.3 2e-14 >seq4462 Length=5303 Score = 297 bits (328), Expect = 8e-76 Identities = 262/327 (80%), Gaps = 0/327 (0%) Strand=Plus/Minus Query 9110 CATGGCATCCGTCAACAAAGTCATCCTCGTCGGCAATCTCGGCGCCGACCCGGAAACCCG 9169 |||||||||||| ||||| || |||||||||||||| ||||||||||| |||||| || Sbjct 5098 CATGGCATCCGTGAACAAGGTGATCCTCGTCGGCAACCTCGGCGCCGATCCGGAAGTGCG 5039 Query 9170 CTACCTCCCGAGCGGCGACGCAATCTCCAATATCCGTCTCGCGACGACCGATCGCTACAA 9229 ||| || |||||||||||||| | | || || || ||||| |||||||| |||||||| Sbjct 5038 CTATCTGCCGAGCGGCGACGCCGTGGCGAACATTCGCCTCGCCACGACCGACCGCTACAA 4979 Query 9230 GGACAAGGCGAGCGGCGAGTTCAAGGAAGTGACCGAGTGGCACCGCGTCGCTTTCTTCGG 9289 |||||||||| |||||||||||||||| ||||||| ||||||||||| | |||||||| Sbjct 4978 GGACAAGGCGTCCGGCGAGTTCAAGGAAATGACCGAATGGCACCGCGTGTCGTTCTTCGG 4919 Query 9290 CCGCCTCGCCGAGATCGTCGACGAGCACCTTCGCAAGGGCGCATCGGTCTACATCGAGGG 9349 ||||| |||||||||||| ||| |||| ||||| | ||||| || ||||| || Sbjct 4918 GCGCCTGGCCGAGATCGTCTCGGAGTACCTGAAGAAGGGTTCGTCGGTGTATATCGAAGG 4859 Query 9350 GCGCATCAAGACGCGGAAGTGGCAGGATCAATCCGGCCAGGATCGCTACACGACCGAGAT 9409 |||||| ||||| || ||||| | || |||| || |||||| |||| || || Sbjct 4858 CCGCATCCGCACGCGCAAATGGCAAGCGCAGGACGGCACCGACCGCTACTCGACGGAAAT 4799 Query 9410 CGTCGCCGACAGGATGCAGATGCTCGG 9436 |||||||||| |||||||||||| || Sbjct 4798 CGTCGCCGACCAGATGCAGATGCTGGG 4772 >seq8688 Length=1745 Score = 120 bits (132), Expect = 1e-22 Identities = 165/228 (72%), Gaps = 12/228 (5%) Strand=Plus/Plus Query 3573 GCGCCGCGCGTCGAGATACGCGGCAAGGTCGGCAAGGTGGACGCCCTTCGCGCACTTCTG 3632 ||| ||| ||||| || | || || || | | ||| ||||||||||||| ||||| Sbjct 235 GCGGCGCTTGTCGATGTAATCAGCCAGATCTGTCAAGTGAACGCCCTTCGCGCCTTTCTG 294 Query 3633 CGAACGCTCCATCCGCACGATCGGCAAGGTGATGTCGCCGTCGAGCACCTTGCGTTGCAG 3692 ||| |||||| ||||||| ||||| | ||| ||||| || | |||||| |||| Sbjct 295 CGACGACTCCATGCGCACGAGCGGCAGCGCGATCTCGCCAGCGGAAATCTTGCGCAGCAG 354 Query 3693 CTTCTCAGGGGAC----AGGTGCGCGAAGTAGTCGCGGCAGACGAGATCGAGGGGGATGA 3748 || || || || ||||||||||||||||||| ||| |||| ||||| | Sbjct 355 TGTC----GGCACCGTGAGCGGCGCGAAGTAGTCGCGGCACACGGTTTCGATCGGGATTA 410 Query 3749 CGGCGCGGC--CGTCGTATTGAGCCATCAGAAGGAAAGCGGTGTTCAT 3794 | |||||| ||| |||||| |||||||||||||| |||| ||||| Sbjct 411 C--CGCGGCCGCGTTGTATTGGGCCATCAGAAGGAAGACGGTATTCAT 456 >seq5168 Length=4284 Score = 93.3 bits (102), Expect = 2e-14 Identities = 78/96 (81%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 7204 GGAGGCGTGGCAGAGTGGTCTAATGCAGCGGATTTGAAATCCGTCATACGTGTGAGCGTA 7263 ||||| ||||||||||||| |||||| ||| |||||| ||| | | | || | | | Sbjct 2985 GGAGGTGTGGCAGAGTGGTTGAATGCACCGGTCTTGAAAACCGGCGAAGGGGTAACCCTT 2926 Query 7264 TCGTGAGTTCGAATCTCACCGCCTCCGCCAGTTTTT 7299 |||||||||||||||||||||||||||||||| || Sbjct 2925 CCGTGAGTTCGAATCTCACCGCCTCCGCCAGTTCTT 2890 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 200392859605932