Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physarum_20polycephalum_20[genbank_20GCA_5F000413255.3_202014-06-30] 69,687 sequences; 205,175,886 total letters Query= NC_012959.1 Length=34920 Score E Sequences producing significant alignments: (Bits) Value seq61051 223 8e-54 >seq61051 Length=235 Score = 223 bits (246), Expect = 8e-54 Identities = 199/242 (82%), Gaps = 8/242 (3%) Strand=Plus/Plus Query 6017 TCCATTTGGTCAGAAAAGACTAtttttttATTGTCAAGCTTGGTGGCAAAGGAGCCATAG 6076 ||||| |||||||||||||| || |||| ||||||||||||||||||| || || ||| Sbjct 1 TCCATCTGGTCAGAAAAGACAATCTTTTG--TGTCAAGCTTGGTGGCAAACGACCCGTAG 58 Query 6077 AGGGCGTTGGAGAGAAGCTTGGCGATGGATCTCATGGTCTGATTTTTGTCACGGTCGGCG 6136 ||||||||||| || | |||||||||||| | || ||| || |||| | || |||||| Sbjct 59 AGGGCGTTGGACAGCAACTTGGCGATGGAGCGCAGGGTTTGGTTTT--GCGCGATCGGCG 116 Query 6137 CGCTCCTTGGCCGCAATGTTGAGCTGGACATATTCGCGCGCAACGCACTTCCATTCGGGA 6196 |||||||||||||| ||||| ||||| || |||||||||||||||||| ||||||||| Sbjct 117 CGCTCCTTGGCCGCGATGTT-AGCTGCACGTATTCGCGCGCAACGCACCGCCATTCGGG- 174 Query 6197 AAAACAGTGGTGCGCTCGTCGGGCACAATCCTGACGCGCCAGCCTCGGTTATGCAGGGTG 6256 ||| | |||||||||||| ||||||| | |||||||| || || | ||||||||| Sbjct 175 AAAGCGGTGGTGCGCTCG-CGGGCACCAGGTGCACGCGCCAACCGAGG-TGTGCAGGGTG 232 Query 6257 AC 6258 || Sbjct 233 AC 234 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 111530028766508