Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physarum_20polycephalum_20[genbank_20GCA_5F000413255.3_202014-06-30] 69,687 sequences; 205,175,886 total letters Query= NC_013055.1 Length=39896 Score E Sequences producing significant alignments: (Bits) Value seq5220 302 1e-77 seq9539 217 4e-52 seq2291 118 3e-22 >seq5220 Length=4210 Score = 302 bits (334), Expect = 1e-77 Identities = 583/847 (69%), Gaps = 21/847 (2%) Strand=Plus/Plus Query 8320 ACGCGTGTGGTCGAGCGCATCGACGAGCTGTTTCACCGCGAGGACCGCGGCGGGATCACC 8379 |||| || || |||||||||||| ||| | |||| | ||| ||| |||| Sbjct 1175 ACGCAGGTCGTGGAGCGCATCGACACGCTCTATCACACGGCCAACCCGAGCGACGTCACG 1234 Query 8380 GGAACGCCGACCGGATTTGTCGACTTAGAC-GCGCGAC-TCGACGGTATGCATGGCGGTG 8437 || ||||| || || || | ||| | ||| || ||| ||| || ||||| ||||| | Sbjct 1235 GGCACGCCCACGGGCTTCATGGACCTCGACCGCATGACGTCG--GGCATGCACGGCGGCG 1292 Query 8438 AGTTGATTATCGTCGGCGGACGGCCGTCGATGGGAAAGACCTCCCTCGCAATGAATATCG 8497 || |||| ||||| | || || ||||||||||| |||||| | || | ||||| |||| Sbjct 1293 AGCTGATCATCGTGGCAGGGCGCCCGTCGATGGGTAAGACCGCGTTCTCGATGAACATCG 1352 Query 8498 CAGAGCATGTCGCCATCGTGTCGAGATTGCCCGTCGGCGTCTTGTCGCTGGAAATGCCGA 8557 ||| | || ||| | | || | |||| || | || || ||| ||||||||||| Sbjct 1353 GCGAGTACGTGGCCGTGGAGTATGGTCTGCCGGTGGCGGTGTTCTCGATGGAAATGCCGG 1412 Query 8558 CCGAACAGTTGACCATGCGCATGCTGGCGTCGACATCCCGT----ATCAGCCAAAACAGG 8613 | ||| | | |||||| ||||| | |||| |||| |||||| || | Sbjct 1413 GCACGCAGCTCATCATGCGTATGCTCGGGTCGGTCGGCCGTCTGGATCAGC----ACCGC 1468 Query 8614 CTGCGAACCGGTCGCCTCGAGGATGACGACTGGCCGCGCCTGACGCGTGGCGTCGAGCTG 8673 |||| || || ||||| || || || |||||| || |||| | ||| || Sbjct 1469 ATGCGCACGGGCCGCCTGACCGACGAGGATTGGCCGAAGCTCACGCACGCCGTGCAGAAA 1528 Query 8674 ATGGCCGACGCGCCCGTGCATATTCTCGATAGCTCCGCGATCACCCCGTCGAAATTCAAG 8733 ||| ||| |||| | || ||| | | || | | ||| | |||| Sbjct 1529 ATGAGCGAGGCGCAGATCTTCATCGACGAAACCGGCGGCCTGAATCCGATGGAATTGCGC 1588 Query 8734 TC-CGAGTTGCGGCGCTTGTATCGCGAATGCGGCCGGCTCGGGATGATTGTCGTTGACTA 8792 || || | |||||| ||| ||| | |||||| ||||||| | || || | || || Sbjct 1589 TCGCGCGC-GCGGCGTCTGTCGCGCCAGTGCGGCAAGCTCGGGCTCATCATCATCGATTA 1647 Query 8793 CCTGCAGCTGATGT-CGGGTGACGGCGGCGGATCTGAAATGCGGGCCACCGAGGTCGCCG 8851 ||||||||| ||| ||| | || || ||| ||| ||| | |||||| | | | Sbjct 1648 CCTGCAGCTCATGAGCGGCT--CGTCGTCGGGCGAGAACCGCGCG--ACCGAGATTTCGG 1703 Query 8852 AAATATCGCGCGCACTCAAACAAATTGCGAAGGAACTCGACGTTCCGATCATCGCGCTGT 8911 |||| |||||| | ||||| | ||||||||||| ||||| ||| | |||||||| | Sbjct 1704 AAATTTCGCGCTCGCTCAAGAGCCTGGCGAAGGAACTGGACGTACCGGTGATCGCGCTCT 1763 Query 8912 CGCAGCTTAATCGAGGGCTCGAGAATCGCCCAAACAAGCGGCCCGTCATGTCCGATCTGC 8971 ||||||| || || || || || | ||||| ||||||||||| || ||||| || |||| Sbjct 1764 CGCAGCTGAACCGCGGTCTGGAACAGCGCCCGAACAAGCGGCCGGTGATGTCGGACCTGC 1823 Query 8972 GCGAGTCGGGTGCGATCGAGCAGGATGCCGACGTGATCCTCTTTATCTACCGCGATGAGG 9031 | || ||||| || ||||||||||| || ||||| ||||| || ||||| ||||| || | Sbjct 1824 GTGAATCGGGCGCAATCGAGCAGGACGCGGACGTCATCCTGTTCATCTATCGCGACGAAG 1883 Query 9032 TCTATAACCCCGACAGCGCAGATCGCGGTACGGCCGAAATCATCATTGCGAAGCAGCGAA 9091 |||| ||||| ||||| | || || ||||||||||||||||| | |||||||| | Sbjct 1884 TCTACAACCCGGACAGTCCCGACAAGGGCACGGCCGAAATCATCATCGGCAAGCAGCGTA 1943 Query 9092 ACGGGCCGATTGGCACCGTACGGCTCGCATTCCAGAACGCAACA-ACCCGGTTCGAGAAT 9150 |||| ||||| || |||| || ||| | ||||| | ||| | || |||||| ||| Sbjct 1944 ACGGTCCGATCGGACCCGTTCGCCTCACGTTCCACGGC-CAATACACGAAGTTCGATAAT 2002 Query 9151 TTCGCCG 9157 || |||| Sbjct 2003 TTTGCCG 2009 >seq9539 Length=1484 Score = 217 bits (240), Expect = 4e-52 Identities = 280/384 (73%), Gaps = 7/384 (2%) Strand=Plus/Plus Query 35318 ATGGCAAATCCGATTATTCCGTGGATCGGCGGCAAGCGGCGCCTTGCAGACCATCTCATT 35377 ||||||| ||| | |||||| |||| || ||||| ||||| ||||| ||| || ||| Sbjct 754 ATGGCAATGCCGGTCATTCCGCGGATAGGTGGCAA-CGGCGGCTTGCGGACGTGCTGATT 812 Query 35378 CCGCGCTTTCCGGCGCACGACTGCTACGTTGAAGTGTTCGCGGGCGGCG-CTGCGTTGTA 35436 || || ||||| || ||| | || || ||||| ||||| ||| | || || Sbjct 813 CCACGTTTTCCACGCCATACCTGTTCTGTCGAGGTGTTTGCGGGGCGCGGCGGCACGGTT 872 Query 35437 TTTCATGCGGCCGCCGGCAAAGGTCGAGGTGATCAACGACGTTAACGGCGAACTGATCAA 35496 ||||||| | |||| || |||| |||||| | || ||| | | || || ||| | || Sbjct 873 CTTCATGCTGTCGCCTGCCGAGGTGGAGGTGCTGAATGACATGAGCGATGAGCTGGTGAA 932 Query 35497 CCTGTATCGCGTCGTTCAGCATCACCTCGAGGAATTCGTGCGGCAGTTCAAATGGGCGCT 35556 ||||||||||| || ||||| |||||||||| |||||| |||| || ||||||||| | Sbjct 933 TCTGTATCGCGTGGTGCAGCACCACCTCGAGGTGTTCGTGAGGCAATTTAAATGGGCGTT 992 Query 35557 CACCAGTCGGCAGGTGTTCGAGTGGCTGAAGCAGACGGCGCCGGAAACGCTCACCGACAT 35616 || || |||| || |||||| || | ||| || || |||||||| ||||| Sbjct 993 GACGAGCCGGC-----TTAAGATGGCTGCAGGACACGCGCCCCGAGACGCTCACGGACAT 1047 Query 35617 CCAGCGTGCGGCGCGGTTCTACTATCTGCAGAAAAACTGCTTTGGCGGGATTGTCCACGG 35676 ||||||||| |||||||||||||||||||| | ||| ||||||| || ||| | || Sbjct 1048 CCAGCGTGCTGCGCGGTTCTACTATCTGCAACAGAACGGCTTTGGTGGTCGTGTTGAGGG 1107 Query 35677 GCAGACGTTCGGCACGGCTACCAC 35700 | ||||| |||||||| || || Sbjct 1108 GAGAACGTTTGGCACGGCAACGAC 1131 >seq2291 Length=11769 Score = 118 bits (130), Expect = 3e-22 Identities = 173/245 (71%), Gaps = 0/245 (0%) Strand=Plus/Plus Query 4703 TTGACGCGCTGCCGGCCGAGTACGACTTCGACATCGCCGGTCTCGGGATTTTTCGAGATC 4762 ||||| ||||||||||| | ||||||||||| | ||| ||||||||||| || || | Sbjct 3239 TTGACACGCTGCCGGCCCATGACGACTTCGACGTTGCCTGTCTCGGGATTCTTGTTGACC 3298 Query 4763 TCGATTGGCATCACGATGCCTTGATAGTCGATGTTGTGCGCCATCATTTCGTCGACAGGT 4822 ||||| | | || | ||||| || ||||||| || |||| | ||||||| || Sbjct 3299 TCGATCGCCTGCAGCACACCTTGGTACATGATGTTGCGCACCATGTTCTCGTCGAGCGGC 3358 Query 4823 AGATGAACGCGATCATCGTAAAGAGGGGACGTCTTGTCCGTTACGAGTACCAGCTTTTCC 4882 ||||| |||||| |||||||| || || || ||| ||||| || | || Sbjct 3359 AGATGCACGCGAGAGTCGTAAAGCGGATGCGCCTGATCCTCCACGAGCGTCAACACCTCA 3418 Query 4883 GGATCGAAAAACAACAGATTGGTTTTGCCAGCAGCGCCGTAGGCATCGAGTGAATTTTTC 4942 ||||||||| | | | ||| ||||||| | |||||||| || |||| ||||| Sbjct 3419 GGATCGAAATAGAGGACGTTGCTTTTGCCGGATGCGCCGTACGCGTCGATGCTGTTTTTT 3478 Query 4943 GCCAT 4947 ||||| Sbjct 3479 GCCAT 3483 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 127440051791052