Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physarum_20polycephalum_20[genbank_20GCA_5F000413255.3_202014-06-30] 69,687 sequences; 205,175,886 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq59190 147 5e-30 seq146 141 2e-28 seq2782 136 9e-27 seq22 131 4e-25 seq6776 123 6e-23 seq4405 120 7e-22 seq66879 109 1e-18 seq30454 105 2e-17 seq62579 96.9 8e-15 >seq59190 Length=243 Score = 147 bits (162), Expect = 5e-30 Identities = 158/209 (76%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || |||||||| || ||||||||||||| ||||||||||| | ||| | |||||| Sbjct 243 AGCACGAGGTGGAGGGTGGACTCCTTTTGGATGTTGTAGTCAGAAAGAGTACGTCCATCC 184 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || ||||||||||| ||||||||||||||||| ||||| ||| ||||| ||| || Sbjct 183 TCGAGCTGCTTTCCAGCGAAGATGAGACGCTGTTGGTCGGGAGGGATTCCCTCTTTGTCT 124 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||| || |||| ||||| | | || || || | || || ||| Sbjct 123 TGGATCTTGGTCTTGACACTCTCGATAGTGTCAGAGGACTCGACCTCAAGGGTAATTGTC 64 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||||||||| || || || ||||| || Sbjct 63 TTACCCGTGAGGGTCTTGACGAAAATCTG 35 >seq146 Length=178297 Score = 141 bits (156), Expect = 2e-28 Identities = 162/218 (74%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | || || | |||||| || |||||||| || | |||||||| | || Sbjct 157688 CGAAGGCGGAGCACCAAGTGGAGGGTGGACTCCTTCTGAATATTGTAGTCGCTGAGGGTG 157747 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||| || || || |||||||| ||||||||||| ||||| ||||| || |||||| Sbjct 157748 CGTCCGTCCTCGAGTTGCTTTCCAGCGAAGATGAGGCGCTGTTGGTCAGGGGGAATTCCC 157807 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || || ||||||||| ||| ||| |||| |||||| | | || || |||||| Sbjct 157808 TCCTTGTCTTGAATCTTTGTCTTGACGCTCTCGATGGTGTCAGAGCTCTCGACCTCCAAC 157867 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| || ||||| |||||||||||||| || Sbjct 157868 GTGATGGTCTTTCCAGTGAGTGTTTTCACAAAAATCTG 157905 Score = 114 bits (126), Expect = 3e-20 Identities = 156/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | || || | |||||| || ||||||||||| | ||||||||| | | || Sbjct 157368 CGAAGGCGGAGCACCAAGTGGAGGGTGGACTCCTTTTGAATGTTGTAGTCGGAGAGGGTG 157427 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | |||||| || || |||||||||||||||||||| || || ||||| || |||||| Sbjct 157428 CGTCCATCCTCGAGTTGCTTTCCGGCGAAGATGAGGCGTTGTTGGTCAGGGGGAATTCCC 157487 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || || |||||||| ||| ||| || | |||||| | | || || || | Sbjct 157488 TCCTTGTCTTGAATCTTAGTCTTTACGCTCTCAATGGTGTCAGAGCTCTCGACTTCGAGA 157547 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || ||||| || ||||| || || || || || || Sbjct 157548 GTAATAGTCTTGCCAGTGAGGGTCTTAACGAAGATCTG 157585 Score = 113 bits (124), Expect = 1e-19 Identities = 154/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | || || | |||||| || ||||||||||||| ||||||||| | | || Sbjct 157045 CGAAGGCGGAGCACCAAGTGGAGGGTGGACTCCTTTTGGATGTTGTAGTCGGAGAGGGTG 157104 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | |||||| || || ||||| || || || || | ||| || ||||| || |||||| Sbjct 157105 CGTCCATCCTCGAGTTGCTTGCCAGCAAAAATCAAACGTTGTTGGTCGGGGGGGATTCCT 157164 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||| ||||| ||| ||||| |||| |||||| | | || || || | Sbjct 157165 TCCTTGTCCTGGATCTTGGTCTTGACGGACTCGATGGTGTCGGAGCTCTCGACCTCAAGA 157224 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAAT 199623 ||||| ||||| || ||||| || || || || || Sbjct 157225 GTGATGGTCTTTCCAGTGAGGGTCTTGACGAAGAT 157259 >seq2782 Length=10868 Score = 136 bits (150), Expect = 9e-27 Identities = 159/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | || || | ||| || || |||||||| |||| ||| ||||||| | || Sbjct 9453 CGAAGGCGAAGCACCAAGTGAAGGGTGGACTCCTTCTGGATGTTATAGTCAGAGAGGGTA 9512 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | |||||| || || |||||||| |||||||| | ||| || ||||| || || ||| Sbjct 9513 CGTCCATCCTCGAGTTGCTTTCCAGCGAAGATCAAACGTTGTTGGTCAGGGGGGATGCCT 9572 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||| |||||| ||| ||||| || | |||||| | | || || ||||| Sbjct 9573 TCCTTGTCCTGGATCTTTGTCTTGACGGACTCAATGGTGTCCGAGCTCTCCACCTCCAAG 9632 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAAT 199623 ||||||||||| |||||||| || || || ||||| Sbjct 9633 GTGATCGTCTTGCCCGTGAGGGTCTTGACGAAAAT 9667 >seq22 Length=338851 Score = 131 bits (144), Expect = 4e-25 Identities = 158/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | || |||||||| || || |||||||| || | ||||||||||| | ||| Sbjct 332208 CGAAGGCGGAGCACAAGGTGAAGGGTGGACTCCTTCTGAATGTTGTAGTCAGAAAGGGTC 332267 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 |||||||| || || ||||| || ||||| |||||||| || ||||| || ||||| Sbjct 332268 CTTCCATCCTCGAGTTGCTTGCCAGCGAAAATGAGACGTTGTTGGTCAGGGGGGATTCCC 332327 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||| ||||| ||| || |||| ||||| | | || || ||||| Sbjct 332328 TCCTTGTCCTGGATCTTAGTCTTGACACTCTCGATAGTGTCAGAGCTCTCGACCTCCAAA 332387 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAAT 199623 || || ||||| || |||||||| ||||| ||||| Sbjct 332388 GTAATGGTCTTTCCTGTGAGAGTCTTCACGAAAAT 332422 Score = 118 bits (130), Expect = 2e-21 Identities = 157/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | || || | ||| | || ||||||||||| | |||||||| | | || Sbjct 331309 CGAAGGCGAAGCACCAAGTGCAAGGTGGACTCCTTTTGAATATTGTAGTCGGAGAGGGTG 331368 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | |||||| || || ||||||||||||||||| || || || ||||| || |||||| Sbjct 331369 CGTCCATCCTCGAGTTGCTTTCCGGCGAAGATAAGGCGTTGTTGGTCAGGGGGGATTCCT 331428 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || || || |||||| ||||||| |||| ||| || | | || || ||||| Sbjct 331429 TCCTTGTCTTGGATCTTTGTCTTCACGCTCTCGATGGTATCAGAGCTCTCGACCTCCAAG 331488 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| || ||||| || || || || ||||| Sbjct 331489 GTGATGGTCTTTCCGGTGAGGGTCTTGACGAAGATTTG 331526 Score = 111 bits (122), Expect = 4e-19 Identities = 148/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || | |||||| || |||||||| |||| ||||||||| ||| || | |||||| Sbjct 331546 AGCACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTCAAGGTGCGTCCATCC 331605 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || |||||||||||||| ||||| | |||||| ||||| || || || || || Sbjct 331606 TCAAGCTGCTTTCCGGCAAAGATCAAACGCTGTTGGTCGGGGGGGATGCCCTCCTTGTCT 331665 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||||||| |||| ||| || | | || || || || ||||| ||| Sbjct 331666 TGGATCTTGGTCTTCACGCTCTCGATGGTATCAGAGCTCTCGACCTCTAAAGTGATGGTC 331725 Query 199598 TTACCCGTGAGAGTTTTCACAAAAAT 199623 || || || | || || || ||||| Sbjct 331726 TTTCCGGTCAAGGTCTTGACGAAAAT 331751 Score = 98.7 bits (108), Expect = 2e-15 Identities = 135/189 (71%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 199438 CTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAA 199497 ||||||||||| ||||||||| | | || | ||| || || ||||||||||||||||| Sbjct 330930 CTCCTTTTGGATGTTGTAGTCGGAGAGGGTGCGTCCGTCCTCGAGCTGCTTTCCGGCGAA 330989 Query 199498 GATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTCACGGA 199557 ||| | || || ||||| || |||||||| ||||| ||||| |||||| Sbjct 330990 GATCAAGCGTTGTTGGTCAGGGGGGATTCCTTCCTTGTCCTGGATCTTGGTCTTCACACT 331049 Query 199558 TTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTTTTCAC 199617 |||| ||| || | | ||||| || | ||||| ||||| || || | || ||||| Sbjct 331050 CTCGATGGTATCGGAGCTCTCTACTTCGAGGGTGATGGTCTTGCCAGTCAAGGTCTTCAC 331109 Query 199618 AAAAATTTG 199626 || || || Sbjct 331110 GAAGATCTG 331118 >seq6776 Length=2740 Score = 123 bits (136), Expect = 6e-23 Identities = 158/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | ||| || ||||| || || |||||||| |||| ||||||||| | | || Sbjct 1433 CGCAGGCGCAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCCGAGAGCGTG 1374 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | || || ||||||||||| ||||||||||| || |||||||||||||| || || Sbjct 1373 CGGCCCTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGCGGGATGCCC 1314 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||| ||||| |||||| |||| ||||| | | || || |||| | Sbjct 1313 TCCTTGTCCTGGATCTTGGCCTTCACATTCTCGATCGTGTCGCTCGGCTCCACCTCCAGC 1254 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 | ||||||||| || || || || ||||| || || || Sbjct 1253 GCGATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTG 1216 >seq4405 Length=6695 Score = 120 bits (132), Expect = 7e-22 Identities = 93/111 (84%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || |||||||| || ||||||||||||| ||||||||||| | ||| | |||||| Sbjct 6079 AGCACGAGGTGGAGGGTGGACTCCTTTTGGATGTTGTAGTCAGAAAGAGTACGTCCATCC 6138 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 || ||||||||||| ||||||||||||||||| ||||| ||| |||||| Sbjct 6139 TCGAGCTGCTTTCCAGCGAAGATGAGACGCTGTTGGTCGGGAGGGATTCCT 6189 >seq66879 Length=210 Score = 109 bits (120), Expect = 1e-18 Identities = 101/128 (79%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||||||||| || || ||||||||||| ||||||||| |||||| | ||||| Sbjct 82 AGGACAAGGTGCAGTGTGCTCTCCTTTTGGATGTTGTAGTCGCTCAAAGTGCGACCATCC 141 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 |||| ||||||||| |||||||| | |||||| ||||| || ||||||||| ||| Sbjct 142 TCCAACTGCTTTCCAGCGAAGATCAAACGCTGTTGGTCAGGGGGGATTCCTTCTTTGTCC 201 Query 199538 TGAATCTT 199545 ||||| || Sbjct 202 TGAATTTT 209 >seq30454 Length=461 Score = 105 bits (116), Expect = 2e-17 Identities = 147/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || | ||| || || ||||||||||| | |||||||| | | || | |||||| Sbjct 29 AGCACCAAGTGAAGGGTGGACTCCTTTTGAATATTGTAGTCGGAGAGGGTGCGTCCATCC 88 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || |||||||| || || ||||| | ||| || ||||| || ||||||||| ||| Sbjct 89 TCGAGCTGCTTGCCAGCAAAGATCAAACGTTGTTGGTCAGGGGGAATTCCTTCCTTGTCC 148 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 |||||||| ||| || || |||| ||||| | | || || || | || || ||| Sbjct 149 TGAATCTTGGTCTTTACTGACTCGATAGTGTCAGAGCTCTCAACCTCAAGGGTAATAGTC 208 Query 199598 TTACCCGTGAGAGTTTTCACAAAAAT 199623 ||||| ||||| || || || || || Sbjct 209 TTACCAGTGAGGGTCTTGACGAAGAT 234 >seq62579 Length=228 Score = 96.9 bits (106), Expect = 8e-15 Identities = 109/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | ||| || ||||| || || |||||||| |||| ||||||||| | | || Sbjct 83 CGCAGGCGCAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCCGAGAGCGTG 142 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | || || ||||||||||| ||||||||||| || |||||||||||||| || || Sbjct 143 CGGCCCTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGCGGGATGCCC 202 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCAC 199554 || ||||| ||||| |||||| Sbjct 203 TCCTTGTCCTGGATCTTGGCCTTCAC 228 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1177868982534029