Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physarum_20polycephalum_20[genbank_20GCA_5F000413255.3_202014-06-30] 69,687 sequences; 205,175,886 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq6776 172 6e-38 seq22 140 4e-28 seq62579 120 3e-22 seq2782 111 2e-19 seq146 107 2e-18 seq59190 98.7 1e-15 seq66879 91.5 2e-13 seq30454 89.7 6e-13 >seq6776 Length=2740 Score = 172 bits (190), Expect = 6e-38 Identities = 167/215 (78%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438 |||| |||||| |||| || |||||| ||||| |||||||| || || ||||| | Sbjct 1427 CGCAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCC 1368 Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 46498 || || ||||||||||||||||| |||| |||||||||||| | ||| | || ||||||| Sbjct 1367 TCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTG 1308 Query 46499 TCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATG 46558 ||| |||||| ||| | || | | ||||||||||| ||||| |||| || ||| Sbjct 1307 TCCTGGATCTTGGCCTTCACATTCTCGATCGTGTCGCTCGGCTCCACCTCCAGCGCGATC 1248 Query 46559 GTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || ||||| |||||||| || || ||||| ||||| Sbjct 1247 GTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCAT 1213 >seq22 Length=338851 Score = 140 bits (154), Expect = 4e-28 Identities = 172/234 (74%), Gaps = 6/234 (3%) Strand=Plus/Plus Query 46360 TTATTTGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTA 46419 ||| |||||||| | | || | ||||| ||||| || |||||||||||||| ||||| Sbjct 330888 TTAGTTGCCTCCACGAAGGCGGAGCACCAAGTGCAAGGTGCTCTCCTTTTGGATGTTGTA 330947 Query 46420 GTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTC 46479 |||||| || ||||| |||| ||||||||||| |||||||| |||||||| || ||||| Sbjct 330948 GTCGGAGAGGGTGCGTCCGTCCTCGAGCTGCTTTCCGGCGAAGATCAAGCGTTGTTGGTC 331007 Query 46480 GGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTC---GCT 46536 | || | | ||||||||| |||||| |||| | || | | || || ||| Sbjct 331008 AGGGGGGATTCCTTCCTTGTCCTGGATCTTGGTCTTCACACTCTCGATGGTATCGGAGCT 331067 Query 46537 CGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTG 46590 | || || || | |||||||| ||||| |||| || || || ||||| || Sbjct 331068 C---TCTACTTCGAGGGTGATGGTCTTGCCAGTCAAGGTCTTCACGAAGATCTG 331118 Score = 113 bits (124), Expect = 5e-20 Identities = 154/214 (72%), Gaps = 6/214 (3%) Strand=Plus/Plus Query 46384 CACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTC 46443 ||||| ||||| || ||||||||| |||||||||||||| || ||||| | || || Sbjct 331320 CACCAAGTGCAAGGTGGACTCCTTTTGAATATTGTAGTCGGAGAGGGTGCGTCCATCCTC 331379 Query 46444 GAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 46503 ||| ||||| |||||||| || | ||| || ||||| | || | | |||||||| Sbjct 331380 GAGTTGCTTTCCGGCGAAGATAAGGCGTTGTTGGTCAGGGGGGATTCCTTCCTTGTCTTG 331439 Query 46504 GATCTTCTTCTTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCCACCGTGATGGT 46560 |||||| |||| | || | | || || |||| || || |||| |||||||| Sbjct 331440 GATCTTTGTCTTCACGCTCTCGATGGTATCAGAGCTC---TCGACCTCCAAGGTGATGGT 331496 Query 46561 TTTGCCCGTCAGCGTTTTAACAAAGATTTGCATT 46594 || || || || || || || |||||||||||| Sbjct 331497 CTTTCCGGTGAGGGTCTTGACGAAGATTTGCATT 331530 Score = 96.9 bits (106), Expect = 4e-15 Identities = 148/210 (70%), Gaps = 6/210 (3%) Strand=Plus/Plus Query 46384 CACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTC 46443 ||||| || | ||| |||||| ||||| ||||||||||| || ||||| | || || Sbjct 331884 CACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGACCATCCTC 331943 Query 46444 GAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 46503 |||||||||||| ||||| || | ||| || ||||| | || | | |||||||| Sbjct 331944 GAGCTGCTTGCCAGCGAAGATAAGGCGTTGTTGGTCAGGGGGGATTCCTTCCTTGTCTTG 332003 Query 46504 GATCTTCTTCTTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCCACCGTGATGGT 46560 |||||| |||| | || | | || || |||| || || |||| ||| || || Sbjct 332004 GATCTTTGTCTTCACGCTCTCGATGGTATCAGAGCTC---TCGACCTCCAACGTTATAGT 332060 Query 46561 TTTGCCCGTCAGCGTTTTAACAAAGATTTG 46590 ||||| || || || || || ||||| || Sbjct 332061 CTTGCCAGTGAGAGTCTTGACGAAGATCTG 332090 >seq62579 Length=228 Score = 120 bits (132), Expect = 3e-22 Identities = 105/131 (80%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438 |||| |||||| |||| || |||||| ||||| |||||||| || || ||||| | Sbjct 89 CGCAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCC 148 Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 46498 || || ||||||||||||||||| |||| |||||||||||| | ||| | || ||||||| Sbjct 149 TCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTG 208 Query 46499 TCCATGATCTT 46509 ||| |||||| Sbjct 209 TCCTGGATCTT 219 >seq2782 Length=10868 Score = 111 bits (122), Expect = 2e-19 Identities = 144/198 (73%), Gaps = 6/198 (3%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| ||||||||||| || ||||| | || ||||||||||||||||| || Sbjct 8858 CTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGTCCATCCTCGAGCTGCTTGCCGGCAAA 8917 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 ||||| || || ||||| | || | | ||||||||| ||||||| |||| | | Sbjct 8918 GATCAAACGTTGTTGGTCAGGGGGGATTCCTTCCTTGTCCTGGATCTTCGTCTTCACGGA 8977 Query 46522 CGCCACCGTGTC---GCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTT 46578 | | | ||||| |||| || || |||| || |||||||| || || || || || Sbjct 8978 CTCAATGGTGTCAGAGCTC---TCGACCTCCAAGGTAATGGTTTTACCAGTGAGGGTCTT 9034 Query 46579 AACAAAGATTTGCATTTT 46596 || || || | || ||| Sbjct 9035 GACGAAAATCTACAATTT 9052 Score = 91.5 bits (100), Expect = 2e-13 Identities = 160/232 (69%), Gaps = 6/232 (3%) Strand=Plus/Plus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 |||| || | || ||| | ||||| || | || |||||| ||||| ||||| || | Sbjct 9762 TGCCACCACGTAGACGGAGCACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAATCAG 9821 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 | || || || | || || || ||||||||||| || || | || || ||||| | | Sbjct 9822 AGAGGGTACGTCCATCCTCTAGTTGCTTGCCGGCAAAGATAAGACGTTGTTGGTCAGGGG 9881 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTC---GCTCGATT 46541 | | | ||||||||| |||||| |||| | | | | | ||||| |||| | Sbjct 9882 GAATTCCTTCCTTGTCCTGGATCTTGGTCTTCACGGACTCGATGGTGTCTGAGCTC---T 9938 Query 46542 CCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 |||| || | |||||||| ||||| || || || || || ||||| ||||| Sbjct 9939 CCACCTCGAGGGTGATGGTCTTGCCAGTGAGTGTCTTCACGAAGATCTGCAT 9990 >seq146 Length=178297 Score = 107 bits (118), Expect = 2e-18 Identities = 138/189 (73%), Gaps = 6/189 (3%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||||||||| ||||||||||| || ||||| | || ||||| |||||||| || || Sbjct 157074 CTCCTTTTGGATGTTGTAGTCGGAGAGGGTGCGTCCATCCTCGAGTTGCTTGCCAGCAAA 157133 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 ||||| || || ||||||| || | | ||||||||| |||||| |||||| | Sbjct 157134 AATCAAACGTTGTTGGTCGGGGGGGATTCCTTCCTTGTCCTGGATCTTGGTCTTGACGGA 157193 Query 46522 CGCCACCGTGTC---GCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTT 46578 | | | ||||| |||| || || || | |||||||| || || || || || || Sbjct 157194 CTCGATGGTGTCGGAGCTC---TCGACCTCAAGAGTGATGGTCTTTCCAGTGAGGGTCTT 157250 Query 46579 AACAAAGAT 46587 || ||||| Sbjct 157251 GACGAAGAT 157259 Score = 107 bits (118), Expect = 2e-18 Identities = 141/194 (73%), Gaps = 6/194 (3%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| || |||||||||||| || ||||| |||| ||||| ||||| || ||||| Sbjct 157717 CTCCTTCTGAATATTGTAGTCGCTGAGGGTGCGTCCGTCCTCGAGTTGCTTTCCAGCGAA 157776 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | |||||| ||||| | || | | ||||||||| ||||| |||||| | Sbjct 157777 GATGAGGCGCTGTTGGTCAGGGGGAATTCCCTCCTTGTCTTGAATCTTTGTCTTGACGCT 157836 Query 46522 CGCCACCGTGTC---GCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTT 46578 | | | ||||| |||| || || |||| ||||||||| || || || || ||||| Sbjct 157837 CTCGATGGTGTCAGAGCTC---TCGACCTCCAACGTGATGGTCTTTCCAGTGAGTGTTTT 157893 Query 46579 AACAAAGATTTGCA 46592 ||||| || |||| Sbjct 157894 CACAAAAATCTGCA 157907 Score = 95.1 bits (104), Expect = 1e-14 Identities = 137/192 (71%), Gaps = 6/192 (3%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| ||||||||||| || ||||| | || || || |||||||| ||||| Sbjct 156660 CTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGTCCATCCTCTAGTTGCTTGCCAGCGAA 156719 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 ||||| || || ||||| | || | | ||||||||| |||||| |||||| | Sbjct 156720 GATCAAACGTTGTTGGTCAGGGGGGATTCCTTCCTTGTCCTGGATCTTGGTCTTGACAGA 156779 Query 46522 CGCCACCGTGTC---GCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTT 46578 | | | || || |||| || || || | |||||||| || || || || || || Sbjct 156780 CTCGATGGTATCGGAGCTC---TCTACCTCAAGAGTGATGGTCTTTCCAGTGAGGGTCTT 156836 Query 46579 AACAAAGATTTG 46590 || ||||| || Sbjct 156837 GACGAAGATCTG 156848 Score = 91.5 bits (100), Expect = 2e-13 Identities = 136/192 (71%), Gaps = 6/192 (3%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 ||||||||| || ||||||||||| || ||||| | || ||||| ||||| |||||||| Sbjct 157397 CTCCTTTTGAATGTTGTAGTCGGAGAGGGTGCGTCCATCCTCGAGTTGCTTTCCGGCGAA 157456 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | ||| || ||||| | || | | ||||||||| ||||| |||| | | Sbjct 157457 GATGAGGCGTTGTTGGTCAGGGGGAATTCCCTCCTTGTCTTGAATCTTAGTCTTTACGCT 157516 Query 46522 CGCCACCGTGTC---GCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTT 46578 | | | ||||| |||| || || || | || || || ||||| || || || || Sbjct 157517 CTCAATGGTGTCAGAGCTC---TCGACTTCGAGAGTAATAGTCTTGCCAGTGAGGGTCTT 157573 Query 46579 AACAAAGATTTG 46590 ||| ||||| || Sbjct 157574 AACGAAGATCTG 157585 >seq59190 Length=243 Score = 98.7 bits (108), Expect = 1e-15 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||||||||| |||||||| || ||||| || | || ||||||||||| || ||||| Sbjct 223 CTCCTTTTGGATGTTGTAGTCAGAAAGAGTACGTCCATCCTCGAGCTGCTTTCCAGCGAA 164 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | ||||| ||||||| || | | ||| ||||| |||||| |||||| | Sbjct 163 GATGAGACGCTGTTGGTCGGGAGGGATTCCCTCTTTGTCTTGGATCTTGGTCTTGACACT 104 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | | ||||| || || || || | || || || || ||||| || || || || Sbjct 103 CTCGATAGTGTCAGAGGACTCGACCTCAAGGGTAATTGTCTTACCCGTGAGGGTCTTGAC 44 Query 46582 AAAGATTTGCAT 46593 || || ||||| Sbjct 43 GAAAATCTGCAT 32 >seq66879 Length=210 Score = 91.5 bits (100), Expect = 2e-13 Identities = 88/113 (78%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 |||||||| || || | || || |||| ||| |||||||||||||| ||||||||| Sbjct 67 CCTCCTCTCAAGCGGAGGACAAGGTGCAGTGTGCTCTCCTTTTGGATGTTGTAGTCGCTC 126 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTC 46479 | |||||| | || || | |||||| || ||||| ||||| ||||| ||||| Sbjct 127 AAAGTGCGACCATCCTCCAACTGCTTTCCAGCGAAGATCAAACGCTGTTGGTC 179 >seq30454 Length=461 Score = 89.7 bits (98), Expect = 6e-13 Identities = 134/189 (71%), Gaps = 6/189 (3%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 ||||||||| |||||||||||||| || ||||| | || |||||||||||||| || || Sbjct 49 CTCCTTTTGAATATTGTAGTCGGAGAGGGTGCGTCCATCCTCGAGCTGCTTGCCAGCAAA 108 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 ||||| || || ||||| | || | | ||||||||| ||||| |||| | | Sbjct 109 GATCAAACGTTGTTGGTCAGGGGGAATTCCTTCCTTGTCCTGAATCTTGGTCTTTACTGA 168 Query 46522 CGCCACCGTGTC---GCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTT 46578 | | | ||||| |||| || || || | || || || || || || || || || Sbjct 169 CTCGATAGTGTCAGAGCTC---TCAACCTCAAGGGTAATAGTCTTACCAGTGAGGGTCTT 225 Query 46579 AACAAAGAT 46587 || ||||| Sbjct 226 GACGAAGAT 234 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 564746027895240