Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physarum_20polycephalum_20[genbank_20GCA_5F000413255.3_202014-06-30] 69,687 sequences; 205,175,886 total letters Query= NC_015273.1 Length=32317 Score E Sequences producing significant alignments: (Bits) Value seq2320 2351 0.0 seq2265 93.3 9e-15 >seq2320 Length=11620 Score = 2351 bits (2606), Expect = 0.0 Identities = 1962/2413 (81%), Gaps = 52/2413 (2%) Strand=Plus/Minus Query 25114 CCGCCCGCAACGATTTCAGCGACGAGCAGATCGCACGGCTTCACGAGGCCTTTCTTGATT 25173 |||| | ||||| ||||||||||||||| || ||||||| ||||||||||||||||| Sbjct 9680 CCGCGCAAAACGAGTTCAGCGACGAGCAGGCCGAGCGGCTTCGCGAGGCCTTTCTTGATT 9621 Query 25174 GCCAGTTCGGTTATCAAAAGGTGTGGTATCGAAACGGCCATCAGCGCACGCGCAACATTC 25233 | ||||| ||||||||||| |||||||| | || |||||||||||||||||||||| Sbjct 9620 CGCTGTTCGACTATCAAAAGGTCTGGTATCGGCAAGGGCATCAGCGCACGCGCAACATTC 9561 Query 25234 TCAAGTCGCGGCAGATCGGCGCGACGTTCTATTTCGCACGCGAGGCGCTAGACGATGCCT 25293 ||||||||||||||||||||||||||| ||||||||||| ||||| || ||||| || Sbjct 9560 TCAAGTCGCGGCAGATCGGCGCGACGTGGTATTTCGCACGAGAGGCACTGGACGACGCGA 9501 Query 25294 TGCAGACTGCACGCAATCAGATTTTTCTATCGGCCAGCAAGGCGCAGGCGCACGTTTTCA 25353 | ||| | ||| ||||||||||||| |||||||||||||| || ||||||||||||| Sbjct 9500 TCACGACCGGCCGCGATCAGATTTTTCTGTCGGCCAGCAAGGCACACGCGCACGTTTTCA 9441 Query 25354 AGTCGTACATTCGGCAGTTTGCCGCCGAGGCCGCCGAGGTCGAATTGACCGGCGACCCGA 25413 | ||||||| | |||||||| |||||||||||| ||||| | || |||||||||| Sbjct 9440 CGCAGTACATTTGCCAGTTTGCGCGCGAGGCCGCCGATGTCGAGCTAACAGGCGACCCGA 9381 Query 25414 TCATTTTGCCGAACATGGCAGAGTTGATTTTCCTCGGCACGAATTCGCGAACGGCGCAGA 25473 |||| |||||||| ||| ||| || || |||||||| |||| || || |||| Sbjct 9380 TCATCTTGCCGAATGAGGCGACGTTACGCTTTCTAGGCACGAACGCGCGCACCGCACAGA 9321 Query 25474 GCTATCACGGCAATTTCTATTTCGACGAGTATTTTTGGGTGAGCGGGTTTCGCCAGCTCA 25533 |||||||||||||||||||||||||||| || |||||| |||| |||||| |||| | Sbjct 9320 GCTATCACGGCAATTTCTATTTCGACGAATACTTTTGGACTGGCGGATTTCGCGAGCTGA 9261 Query 25534 ACAAGGTTGCATCGGGCATGGCGATGCACAAGAAA-TGGCGAAAGACGTATTTTTCAACG 25592 | ||||| || |||||||||||||||||||| ||| ||| |||| || ||||| || ||| Sbjct 9260 ATAAGGTCGCGTCGGGCATGGCGATGCACAAAAAAATGGAGAAAAACCTATTTCTCCACG 9201 Query 25593 CCGTCGAGCATCACGCACGAGGCTTACACCTTCTGGAGTGGCGAGCACTACAACAGGGGC 25652 ||||||||||| || | || || |||||||||||||||||||||| |||| | ||| Sbjct 9200 CCGTCGAGCATTGGACATGCCGCCTATACCTTCTGGAGTGGCGAGCACTTCAACCGAGGC 9141 Query 25653 CGCGCAAAGGCCGATCACATTCATCTCGATATTTCGCACTCGGCGCTCGCTCGCGGCCGG 25712 |||||||||| |||||| | ||||| || | ||| | ||||||||| ||||||| Sbjct 9140 CGCGCAAAGGTCGATCATCTGCATCTGGACGTAACGCGCAAGGCGCTCGCCGGCGGCCGT 9081 Query 25713 CTCTGCGAGGATCGACAGTTTCGCCAGATCGTGACGGTCGAGGATGCCGTCGCCGGCGGT 25772 |||||||||||| | || | |||||||||||||| ||||||||||||||||||||||| Sbjct 9080 CTCTGCGAGGATAGGCAATGGCGCCAGATCGTGACCGTCGAGGATGCCGTCGCCGGCGGG 9021 Query 25773 TGCGACTTGTTCGATATCGACGAGCTGCGCCTTGAATACAGCGCGCAGGAATACGCGAAT 25832 |||||| |||||||||||| |||||| || |||||||||||||||||||||||||| ||| Sbjct 9020 TGCGACCTGTTCGATATCGGCGAGCTACGTCTTGAATACAGCGCGCAGGAATACGCCAAT 8961 Query 25833 CTGTTGATGTGTCAGTTTATCGACGATACCGCGTCGATCTTTCCGCTCGCCGAGCTGCAA 25892 ||||||||||| ||||||||||||||||| |||||||| || |||||||| || | || Sbjct 8960 CTGTTGATGTGCCAGTTTATCGACGATACAGCGTCGATTTTCCCGCTCGCGGATTTACAG 8901 Query 25893 CGCTGCATGGTCGACTCGTGGGAAGAATGGGCCGACGATTTCAAGCCGCTCGCGCCCCGC 25952 || ||||||||||| | ||||||| Sbjct 8900 CGTTGCATGGTCGATT-------------------------------------GCCCCGC 8878 Query 25953 CCTTTCGGGTTCCGGCCGGTATGGGTTGGCTACGATCCAGCGCTTTCCGGCGACTCGGCC 26012 |||||||| | || ||| | ||||| ||||| || |||||||| || || ||||||||| Sbjct 8877 CCTTTCGGCTATCGCCCGCTGTGGGTCGGCTATGACCCAGCGCTATCGGGTGACTCGGCC 8818 Query 26013 GGCCTTGTCNNNNNNNNNNNNNNNNNNNTGCCGGGGGGCAAGTTCCGCGTATTGCACAAG 26072 ||| | | |||| ||||||||||| ||||| |||||||| Sbjct 8817 GGCTTGAGCGTCGTCGCACCGCCGGCGGTGCCTGGGGGCAAGTTTCGCGTGCTGCACAAG 8758 Query 26073 TGCCAATTTCGCGGCATGGATTTCGAGGGGCAAGCCGAGGCGATTCGACAGATCACTCAG 26132 ||||||| ||||||||||||||||||| || ||||||||||| || |||||| ||| Sbjct 8757 TGCCAATGGCGCGGCATGGATTTCGAGGCACAGGCCGAGGCGATACGCGCGATCACGCAG 8698 Query 26133 CAATACAACGTCGAATATATGTCGATCGATACGACGGGCATCGGCCAGGGTGTTTATCAG 26192 ||||||||||||| |||||| ||||||||||||| |||||||||||||| || |||||| Sbjct 8697 CAATACAACGTCGCCTATATGGCGATCGATACGACAGGCATCGGCCAGGGCGTCTATCAG 8638 Query 26193 CTCGTCAAACAGTTCTATCCGAGCGCGGTCGCGCTCAACTATTCGCCCGAAATCAAGGGG 26252 ||||||| ||||||||||||| |||||||||||||||||||||||| ||| | ||||| Sbjct 8637 CTCGTCAGGCAGTTCTATCCGAACGCGGTCGCGCTCAACTATTCGCCAGAAGTTAAGGGC 8578 Query 26253 CGTCTCGTGCTTAAGGGCTTGTCGGTGATCGGCAAGGGCCGGCTCGAATTCGATGCCGGT 26312 || || ||||| || ||||||||||||||||| |||||||||||||||||||||||||| Sbjct 8577 CGCCTGGTGCTCAAAGGCTTGTCGGTGATCGGTAAGGGCCGGCTCGAATTCGATGCCGGA 8518 Query 26313 TGGACAGACCTAGCGCAATCCTTCATGGCCATTCGGAAAACCATGACGGCGAGCGGCCGA 26372 ||||||||| |||||||||| |||||||| ||||| |||||||||||||||||||| Sbjct 8517 TGGACAGACTTAGCGCAATCGTTCATGGCGATTCGCAAAACCATGACGGCGAGCGGAAAG 8458 Query 26373 AAGGTGACATACGAGGCGAGCCGCAGCGAGGAAACCGGCCACGCCGATCTAGCGTGGGCG 26432 || || || || || |||||||| | |||| |||| || ||||| || || || |||||| Sbjct 8457 AAAGTCACTTATGAAGCGAGCCGTAACGAGCAAACAGGACACGCGGACCTTGCCTGGGCG 8398 Query 26433 TGCCTGCACGCGCTCGATAACGAGCCGCTAGAGGGCACGACCGCAAACAATACCGGCTTT 26492 |||||||||||||||| ||||| ||| |||| ||| ||||| ||||||||||||||| Sbjct 8397 TGCCTGCACGCGCTCGGCAACGAACCGTTAGAAGGCGTCACCGCCAACAATACCGGCTTT 8338 Query 26493 ATGGAGTTCTCTTAATGAGCAAGCGTAA---GCAGCGCAGCAACTATCACGCGTCGAGCA 26549 ||||||||||| | |||||||||| || ||| ||| ||| | | ||| | Sbjct 8337 ATGGAGTTCTCAAATTGAGCAAGCGCAACATGCA-CGCCGCACC--GCCCGCACTG---T 8284 Query 26550 CGACGCCGGCGGCCACGTCGACGCCGGCGCGCGCCGAGGCCTTCACCTTCGACGATCCTG 26609 |||| |||| ||| ||||||||||| || | ||||||||||||||||||| ||| | | Sbjct 8283 CGACTGCGGCCGCCCCGTCGACGCCGCCGAGGGCCGAGGCCTTCACCTTCGGCGACGCGG 8224 Query 26610 TGCCGGTGATGGATCGCGCCGAAATTCTTGACTACGTGCAAGCGTATGCGATCGGCGATT 26669 |||| || ||||| |||||||| |||||||||||||| || ||| || |||| | | Sbjct 8223 TGCCAGTAATGGACCGCGCCGAGATTCTTGACTACGTCGAAACGTGGTCGGCCGGCAACT 8164 Query 26670 GGTATGAGCCGCCGGTGTCATGGGCGGGCCTTGCAAAGACGTTTCGCGCCGGCGTGCATC 26729 ||| |||||||||||||| ||| ||||||| || || || || ||||||||||| |||| Sbjct 8163 GGTTCGAGCCGCCGGTGTCGTGGTCGGGCCTGGCTAAAACATTCCGCGCCGGCGTCCATC 8104 Query 26730 ACGGGTCGGCGATCTACTTCAAACGCAATGTGTTGTCGTCGACGTTCATCCCGCACAAGT 26789 |||| |||||||||||||||||||| || ||| | ||| |||||||||| ||||||| || Sbjct 8103 ACGGCTCGGCGATCTACTTCAAACGTAACGTGCTATCGGCGACGTTCATTCCGCACAGGT 8044 Query 26790 TGCTCACGCGCGAAGAATTCGACAAGTGGGCGCTCGATTTCCTCACGTTCGGCAATGGGT 26849 ||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| Sbjct 8043 TGCTCACGCGCGAAGTGTTCGATAAGTGGGCGCTCGATTTCCTCACGTTCGGCAATGGGT 7984 Query 26850 ACATCGAGCGGCGAAAGGCAAGGATCGGCAATACGCTCGCGCTCAAACGCGCGCCGTCGA 26909 | | |||| ||||||| || | ||| |||| ||| || | || ||||| | | Sbjct 7983 ATCTTGAGCTGCGAAAGAACCGGCTAGGCGGGCCGCTTGCGTTCGAGCGTGCGCCAGCCA 7924 Query 26910 AATNNNNNNNNNNNNNNNCCGACTTGCAACGCTTCGTGCAGCTCAACGGCTATCAACAGA 26969 | | | ||| | || |||||| ||| ||||||| | || | Sbjct 7923 AGTACATGCGCCGCGCGACGGACCTACAGCGCTTCTATCAGGTCAACGGGTGGCAGGCG- 7865 Query 26970 TCGAATATGAGTTCGAGCCGGGTTCGGTGCATCACTTGATGGAACCCGACATTAATCAAG 27029 ||| | ||||||| | | || | |||||||||||||||||||| ||||||||||| | Sbjct 7864 TCG--CACGAGTTCGCGGCCGGGACCGTGCATCACTTGATGGAACCGGACATTAATCAGG 7807 Query 27030 AGGTGTACGGCTTGCCCGAATATCTCGGCGCGCTGCACTCGGCATGGTTGAACGAGTCGG 27089 ||||||| ||||||||||||||||||||||| |||||| ||||||||||||||||||||| Sbjct 7806 AGGTGTATGGCTTGCCCGAATATCTCGGCGCCCTGCACGCGGCATGGTTGAACGAGTCGG 7747 Query 27090 CGACGCTCTTTCGTCGCAAGTATTACGAGAATGGATCGCACGCCGGTTTCATCCTGTACA 27149 ||||||| ||||| || ||||||||||||||| |||||||| || || |||||||||| Sbjct 7746 CGACGCTATTTCGCCGGCGGTATTACGAGAATGGTTCGCACGCGGGCTTTATCCTGTACA 7687 Query 27150 TGACCGATGCGGCGCAAAGTCAAAGCGATGTCGACAAGATGCGCGAGGCGTTGAAGAACA 27209 |||| ||||||||||| |||| |||||||||||| ||||||||||||||||| |||| Sbjct 7686 TGACGGATGCGGCGCAGTCGCAAACCGATGTCGACAACATGCGCGAGGCGTTGAAAAACA 7627 Query 27210 GCAAGGGGCCGGGGAATTTCCGAAACCTTTTCATGTACGCGCCGAACGGCAAGAAAGACG 27269 |||||||||| || |||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 7626 GCAAGGGGCCAGGCAATTTCCGAAACCTGTTCATGTACGCGCCGAACGGCAAGAAAGACG 7567 Query 27270 GCATCCAGCTCATTCCGGTTTCCGAGGTCACGGCGAAAGACGAGTTCTTCAACATCAAGA 27329 | |||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||| Sbjct 7566 GTATCCAGCTCATTCCCGTTTCCGAGGTCACGGCGAAAGACGAGTTTTTCAATATCAAGA 7507 Query 27330 ATGTCACGCGCGACGACTTGCTCGCGGCGCATCGCATCCCGCCTCAGCTCATGGGGATCG 27389 |||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| Sbjct 7506 ATGTCACGCGCGACGACTTGCTCGCGGCGCATCGCATCCCCCCGCAGCTCATGGGGATCG 7447 Query 27390 TGCCGAGCAATACCGGCGGATTCGGCGCAACGGACAAGGCCGCCGAGGTGTTC-GGCGTG 27448 |||||||||||||||||||||| ||||| | |||| |||||||||||| ||| ||||| Sbjct 7446 TGCCGAGCAATACCGGCGGATTTGGCGCGGCCGACACGGCCGCCGAGGTATTCGGGCGT- 7388 Query 27449 AATGAAATCGCGCCCCTGCAACGGCGCTTTGAACAGCTCAACGAGTGGATCGGCGACGAG 27508 |||||||||| |||||||||||||| || | |||||||| || ||||||||||||||| Sbjct 7387 AATGAAATCGAACCCCTGCAACGGCGGTTCGCCCAGCTCAATGACTGGATCGGCGACGAG 7328 Query 27509 GTTGTGCGCTTCA 27521 ||||| ||||||| Sbjct 7327 GTTGTTCGCTTCA 7315 Score = 262 bits (290), Expect = 8e-66 Identities = 231/288 (80%), Gaps = 0/288 (0%) Strand=Plus/Minus Query 7691 ATGTGCGCGATCACGACTTTCGCGAGCGCTTCGGCGATCGCAGGCTTTAGCCCGTGCGTG 7750 || ||||||||| ||| ||||||||| || ||||||||||| ||||| || | |||| | Sbjct 10035 ATATGCGCGATCGCGATTTTCGCGAGGGCGTCGGCGATCGCCGGCTTGAGGCTGTGCCGG 9976 Query 7751 CCGGCGATCTTGCGCACGATCGCGCCGATCGTCTCGCCGTGCCAGCTCTTTTCCTTTCGT 7810 |||||||||||||||||||||| ||||| ||| ||||||||||||||| ||||||||| Sbjct 9975 CCGGCGATCTTGCGCACGATCGGGCCGAGCGTTTCGCCGTGCCAGCTCGCCTCCTTTCGT 9916 Query 7811 TCGCCCAGGCCTTTTGTCATCGAGGCCGATCGCGCCTGAATGGTGAGCATATCCGGGGAG 7870 ||| ||| | | || |||||||||||||| |||||| |||||||||| ||||||| | | Sbjct 9915 TCGTCCATGTCCTTGGTCATCGAGGCCGAGCGCGCCCGAATGGTGAGGATATCCGCGCCG 9856 Query 7871 CCGGCATGCTCGATTTCGTTGATCGTGAATGAGCCCTTGTCGACGAGTCCGGTGTCTTCC 7930 ||| ||||| | |||| || || || | |||||||||||||| ||||| || | Sbjct 9855 CCGCTGTGCTCTACCTCGTCGACGGTAAAGGCGCCCTTGTCGACGACGCCGGTATCGGAC 9796 Query 7931 CATCCGATCGATACGCGGATCACTTCGCCGCGCTTGGGTAGCGCGAGC 7978 || |||| ||| ||||| | ||| ||||||||| ||| | ||| ||| Sbjct 9795 CAGCCGAACGACACGCGCAGCACGGCGCCGCGCTCGGGGATCGCAAGC 9748 >seq2265 Length=11913 Score = 93.3 bits (102), Expect = 9e-15 Identities = 281/423 (66%), Gaps = 11/423 (3%) Strand=Plus/Plus Query 5020 CGGCCGCCGTTGCGACCGCGTGCGCGAGCCGCTTTCAGGCCGGCGAGGGTGTTTTCGCTT 5079 ||||| || ||| ||||||| ||||| || || |||||||||| |||| ||| | Sbjct 7979 CGGCCACCCTTGTGACCGCGAGCGCGGGCGGCCGACAGGCCGGCGCGGGTACGTTCACGG 8038 Query 5080 ATCACGTCGCGTTGATACTGAGCCATCGCCGCGATGAAACCGAAAAAC-ATGCGGCCTT- 5137 |||| || ||| | ||| || | || ||| | |||| || | |||||| Sbjct 8039 ATCAGGTTGCGCTCGAACTCCGCGAGTGCGCCGAACAGGT-GAAACACGAGGCGGCCACC 8097 Query 5138 GCGCGGTGCTCGTGTCGATCTTTTCCGACAGGCTTTCGAACGCGACGCCACGGCCGGCCA 5197 | || |||| |||||||| ||||| ||||| | ||||||| | || | | Sbjct 8098 GATCGATGCT-GTGTCGATGCTTTCCTGAAGGCTGCGCAGACCGACGCCGGTGGCGTCGA 8156 Query 5198 GCTCGTCGACGAGCTGCACGAGGTCGACGAGCGAGCGGCCGAGGCGATCGAGCCGCCAAA 5257 || ||||| || | | |||||| ||||| || ||||| || ||||| ||||| | Sbjct 8157 GCCGTTCGACCAGATAGATGAGGTCTTTCAGCGAACGCCCGAGCCGGTCGAGTCGCCAGA 8216 Query 5258 CGATCAGCGTGTCGCCCTTGCGTAACGCTCGCAT-CATGTTCGCCAGCTCGGGCCG-TCC 5315 | | ||||| || ||| | || ||||| || || |||| ||| || ||| Sbjct 8217 TCACAACGGTGTCACCGCGGCGCAGCG-TCGCAAGCAGCGCCGTCAGCCCGGTGCGCTCC 8275 Query 5316 GTCCTTCGACTTTCCGCTCGCCTTTTCTTCGTACACCTGCACGCAACCAGCTCGCGCGAG 5375 | | |||| ||||| ||| | || ||| | | || |||| ||||| ||| || Sbjct 8276 G-CTTTCGCG---CCGCTGGCCGTGTCCTCGAATATGCGCTCGCACCCAGCCTTCGCAAG 8331 Query 5376 CGCGTCGTGTTGCAGCTCTAGGTTTTGATCGACCGTCGACACGCGCGCATAGCCGATGCG 5435 ||| ||| ||||||| || || | || ||| | || || || || |||||||||||| | Sbjct 8332 CGCATCGCGTTGCAGGTCGAGATGCTGGTCGTCGGTGGAGACCCGTGCATAGCCGATGAG 8391 Query 5436 CAT 5438 ||| Sbjct 8392 CAT 8394 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 103207321786426