Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physarum_20polycephalum_20[genbank_20GCA_5F000413255.3_202014-06-30] 69,687 sequences; 205,175,886 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq2782 111 1e-19 seq146 96.9 2e-15 seq22 91.5 1e-13 seq6776 87.8 1e-12 >seq2782 Length=10868 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||||| ||| || ||||| ||||| || || || ||| | ||| |||| || Sbjct 9782 ACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAATCAGAGAGGGTACGTCCATCCTCT 9841 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 || || || |||||||| || || ||||| ||||| | || | || |||||||| Sbjct 9842 AGTTGCTTGCCGGCAAAGATAAGACGTTGTTGGTCAGGGGGAATTCCTTCCTTGTCCTGG 9901 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 ||||| || ||||| | || | || | ||| || |||| ||| ||||| || Sbjct 9902 ATCTTGGTCTTCACGGACTCGATGGTGTCTGAGCTCTCCACCTCGAGGGTGATGGTCTTG 9961 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || ||||| |||||||| ||||||||||| Sbjct 9962 CCAGTGAGTGTCTTCACGAAGATCTGCAT 9990 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||||| ||| |||||||||||||| || || |||||| | ||| | || || Sbjct 9162 ACCAAGTGAAGGGTGGACTCTTTCTGAATGTTGTAATCAGAAAGGGTACGTCCGTCCTCT 9221 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 || || ||||| ||||| || || ||||| ||||| | || | || |||||||| Sbjct 9222 AGTTGCTTTCCAGCAAAGATGAGGCGTTGTTGGTCAGGGGGGATTCCTTCCTTGTCCTGG 9281 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 ||||| || ||||| | || | ||| | ||| || || | ||| || || || Sbjct 9282 ATCTTAGTCTTTACGGACTCGATGGTATCAGAGCTCTCGACCTCCAAGGTAATTGTCTTA 9341 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCATATT 34984 || ||||| ||||| || || |||| ||||| Sbjct 9342 CCAGTGAGGGTCTTGACGAAAATCTAAATATT 9373 Score = 98.7 bits (108), Expect = 6e-16 Identities = 147/206 (71%), Gaps = 2/206 (1%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||||| ||| || ||||| ||||||||||| || ||| | ||| |||| || Sbjct 9465 ACCAAGTGAAGGGTGGACTCCTTCTGGATGTTATAGTCAGAGAGGGTACGTCCATCCTCG 9524 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 || || ||||| || || || | ||||| ||||| | || | || |||||||| Sbjct 9525 AGTTGCTTTCCAGCGAAGATCAAACGTTGTTGGTCAGGGGGGATGCCTTCCTTGTCCTGG 9584 Query 34893 ATCTTCTGT-TTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTT 34951 ||||| ||| |||||||| | || | || | ||| || || | ||| || || || Sbjct 9585 ATCTT-TGTCTTGACGGACTCAATGGTGTCCGAGCTCTCCACCTCCAAGGTGATCGTCTT 9643 Query 34952 TCCCGTGAGAGTCTTCACAAAGATCT 34977 |||||||| ||||| || || |||| Sbjct 9644 GCCCGTGAGGGTCTTGACGAAAATCT 9669 >seq146 Length=178297 Score = 96.9 bits (106), Expect = 2e-15 Identities = 145/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||| | ||| || || |||||||| ||||| || ||| | ||| |||| || Sbjct 157380 ACCAAGTGGAGGGTGGACTCCTTTTGAATGTTGTAGTCGGAGAGGGTGCGTCCATCCTCG 157439 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 || || |||||||| || || || ||||| ||||| | || | ||||||||||| | Sbjct 157440 AGTTGCTTTCCGGCGAAGATGAGGCGTTGTTGGTCAGGGGGAATTCCCTCCTTGTCTTGA 157499 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 ||||| || ||| | || | ||| | ||| || |||| || || || || Sbjct 157500 ATCTTAGTCTTTACGCTCTCAATGGTGTCAGAGCTCTCGACTTCGAGAGTAATAGTCTTG 157559 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTG 34978 || ||||| ||||| || |||||||| Sbjct 157560 CCAGTGAGGGTCTTAACGAAGATCTG 157585 Score = 91.5 bits (100), Expect = 1e-13 Identities = 150/213 (70%), Gaps = 10/213 (5%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||| | ||| || |||||||| || ||||| ||| | ||| | || || Sbjct 157700 ACCAAGTGGAGGGTGGACTCCTTCTGAATATTGTAGTCGCTGAGGGTGCGTCCGTCCTCG 157759 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 || || ||||| || || || || || || ||||| | || | ||||||||||| | Sbjct 157760 AGTTGCTTTCCAGCGAAGATGAGGCGCTGTTGGTCAGGGGGAATTCCCTCCTTGTCTTGA 157819 Query 34893 ATCTTCTGT-TTGACGGATGCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGG 34947 ||||| ||| ||||| ||| ||||| ||| | ||| || || | || |||| Sbjct 157820 ATCTT-TGTCTTGAC----GCTCTCGATGGTGTCAGAGCTCTCGACCTCCAACGTGATGG 157874 Query 34948 TTTTTCCCGTGAGAGTCTTCACAAAGATCTGCA 34980 | ||||| ||||| || |||||||| ||||||| Sbjct 157875 TCTTTCCAGTGAGTGTTTTCACAAAAATCTGCA 157907 >seq22 Length=338851 Score = 91.5 bits (100), Expect = 1e-13 Identities = 143/204 (70%), Gaps = 8/204 (4%) Strand=Plus/Plus Query 34778 GTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTG 34837 ||||| ||| || ||||||||||| ||||| |||||| | | | |||| || || || Sbjct 332225 GTGAAGGGTGGACTCCTTCTGAATGTTGTAGTCAGAAAGGGTCCTTCCATCCTCGAGTTG 332284 Query 34838 TTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTT 34897 || || || || || || ||||| ||||| | || | ||||||||||| ||||| Sbjct 332285 CTTGCCAGCGAAAATGAGACGTTGTTGGTCAGGGGGGATTCCCTCCTTGTCCTGGATCTT 332344 Query 34898 CTGTTTGACGGATGCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGGTTTTTC 34953 ||||| || ||||| ||| | ||| || || | || ||||| |||| Sbjct 332345 AGTCTTGAC----ACTCTCGATAGTGTCAGAGCTCTCGACCTCCAAAGTAATGGTCTTTC 332400 Query 34954 CCGTGAGAGTCTTCACAAAGATCT 34977 | |||||||||||||| || |||| Sbjct 332401 CTGTGAGAGTCTTCACGAAAATCT 332424 Score = 87.8 bits (96), Expect = 1e-12 Identities = 148/211 (70%), Gaps = 10/211 (5%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||||| || || ||||| ||||| ||||| || ||| | || |||| || Sbjct 331885 ACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGACCATCCTCG 331944 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| || || || || || || ||||| ||||| | || | || |||||||| Sbjct 331945 AGCTGCTTGCCAGCGAAGATAAGGCGTTGTTGGTCAGGGGGGATTCCTTCCTTGTCTTGG 332004 Query 34893 ATCTTCTGT-TTGACGGATGCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGG 34947 ||||| ||| || ||| || ||||| ||| | ||| || || | ||||| | Sbjct 332005 ATCTT-TGTCTTCACG----CTCTCGATGGTATCAGAGCTCTCGACCTCCAACGTTATAG 332059 Query 34948 TTTTTCCCGTGAGAGTCTTCACAAAGATCTG 34978 | || || ||||||||||| || |||||||| Sbjct 332060 TCTTGCCAGTGAGAGTCTTGACGAAGATCTG 332090 >seq6776 Length=2740 Score = 87.8 bits (96), Expect = 1e-12 Identities = 147/211 (70%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||| ||| | ||| || ||||| ||||| |||||||| || | || | || ||| Sbjct 1421 ACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCCTCCTCC 1362 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| || ||||| || || || || |||||||| |||| | ||||||||||| Sbjct 1361 AGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGG 1302 Query 34893 ATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTT 34950 ||||| || || || || |||| || | | ||| || || | | || || | Sbjct 1301 ATCTTGGCCTTCAC--ATTCTCGATCGTGTCGCTCGGCTCCACCTCCAGCGCGATCGTCT 1244 Query 34951 TTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | || || || |||||||| ||||||||||| Sbjct 1243 TGCCGGTCAGCGTCTTCACGAAGATCTGCAT 1213 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324357885335736